digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 3885 368 3885 0 ",
		bb="0,0,3885,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 927 8 927 63 2165 63 2165 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 981 15 0 92 16 -Workflow Outputs ",
			bb="927,8,2165,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="981,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 935.5 35.5 935.5 54.5 1068.5 54.5 1068.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1002 42.5 0 117 23 -mhc_i_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_filtered_epitopes,
			pos="1002,45",
			rects="935.5,35.5,1068.5,54.5",
			width=1.8472];
		combined_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1073 35.5 1073 54.5 1225 54.5 1225 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1149 42.5 0 136 26 -combined_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_filtered_epitopes,
			pos="1149,45",
			rects="1073,35.5,1225,54.5",
			width=2.1111];
		mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1229 35.5 1229 54.5 1365 54.5 1365 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1297 42.5 0 120 24 -mhc_ii_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_filtered_epitopes,
			pos="1297,45",
			rects="1229,35.5,1365,54.5",
			width=1.8889];
		mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1369 35.5 1369 54.5 1503 54.5 1503 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1436 42.5 0 118 22 -mhc_ii_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_ranked_epitopes,
			pos="1436,45",
			rects="1369,35.5,1503,54.5",
			width=1.8611];
		mhc_ii_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1507.5 35.5 1507.5 54.5 1620.5 54.5 1620.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1564 42.5 0 97 19 -mhc_ii_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_all_epitopes,
			pos="1564,45",
			rects="1507.5,35.5,1620.5,54.5",
			width=1.5694];
		combined_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1624.5 35.5 1624.5 54.5 1753.5 54.5 1753.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1689 42.5 0 113 21 -combined_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_all_epitopes,
			pos="1689,45",
			rects="1624.5,35.5,1753.5,54.5",
			width=1.7917];
		mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1757.5 35.5 1757.5 54.5 1888.5 54.5 1888.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1823 42.5 0 115 21 -mhc_i_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_ranked_epitopes,
			pos="1823,45",
			rects="1757.5,35.5,1888.5,54.5",
			width=1.8194];
		mhc_i_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1893 35.5 1893 54.5 2003 54.5 2003 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1948 42.5 0 94 18 -mhc_i_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_all_epitopes,
			pos="1948,45",
			rects="1893,35.5,2003,54.5",
			width=1.5278];
		combined_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2007 35.5 2007 54.5 2157 54.5 2157 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2082 42.5 0 134 24 -combined_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_ranked_epitopes,
			pos="2082,45",
			rects="2007,35.5,2157,54.5",
			width=2.0833];
	}
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 3877 360 3877 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,3877,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tdna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 313.5 16.5 332.5 77.5 332.5 77.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 47 320.5 0 45 8 -tdna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_cov,
			pos="47,323",
			rects="16.5,313.5,77.5,332.5",
			width=0.84722];
		netmhc_stab	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 82 313.5 82 332.5 162 332.5 162 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 122 320.5 0 64 11 -netmhc_stab ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=netmhc_stab,
			pos="122,323",
			rects="82,313.5,162,332.5",
			width=1.1111];
		minimum_fold_change	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166 313.5 166 332.5 294 332.5 294 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 230 320.5 0 112 19 -minimum_fold_change ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=minimum_fold_change,
			pos="230,323",
			rects="166,313.5,294,332.5",
			width=1.7778];
		peptide_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 298.5 313.5 298.5 332.5 439.5 332.5 439.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 369 320.5 0 125 23 -peptide_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=peptide_sequence_length,
			pos="369,323",
			rects="298.5,313.5,439.5,332.5",
			width=1.9583];
		alleles	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 443.5 313.5 443.5 332.5 492.5 332.5 492.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 468 320.5 0 33 7 -alleles ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=alleles,
			pos="468,323",
			rects="443.5,313.5,492.5,332.5",
			width=0.68056];
		downstream_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 496.5 313.5 496.5 332.5 661.5 332.5 661.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 579 320.5 0 149 26 -downstream_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=downstream_sequence_length,
			pos="579,323",
			rects="496.5,313.5,661.5,332.5",
			width=2.2917];
		transcript_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1275 313.5 1275 332.5 1417 332.5 1417 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1346 320.5 0 126 26 -transcript_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_expression_file,
			pos="1346,323",
			rects="1275,313.5,1417,332.5",
			width=1.9722];
		phased_proximal_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 666 313.5 666 332.5 832 332.5 832 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 749 320.5 0 150 28 -phased_proximal_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_proximal_variants_vcf,
			pos="749,323",
			rects="666,313.5,832,332.5",
			width=2.3056];
		normal_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 836 313.5 836 332.5 908 332.5 908 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 872 320.5 0 56 10 -normal_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_vaf,
			pos="872,323",
			rects="836,313.5,908,332.5",
			width=1];
		trna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 912.5 313.5 912.5 332.5 969.5 332.5 969.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 941 320.5 0 41 8 -trna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_vaf,
			pos="941,323",
			rects="912.5,313.5,969.5,332.5",
			width=0.79167];
		reference_fasta	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2392.5 313.5 2392.5 332.5 2485.5 332.5 2485.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2439 320.5 0 77 15 -reference_fasta ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_fasta,
			pos="2439,323",
			rects="2392.5,313.5,2485.5,332.5",
			width=1.2917];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1082.5 313.5 1082.5 332.5 1207.5 332.5 1207.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1145 320.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="1145,323",
			rects="1082.5,313.5,1207.5,332.5",
			width=1.7361];
		trna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1211.5 313.5 1211.5 332.5 1270.5 332.5 1270.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1241 320.5 0 43 8 -trna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_cov,
			pos="1241,323",
			rects="1211.5,313.5,1270.5,332.5",
			width=0.81944];
		gene_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2489.5 313.5 2489.5 332.5 2608.5 332.5 2608.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2549 320.5 0 103 20 -gene_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_expression_file,
			pos="2549,323",
			rects="2489.5,313.5,2608.5,332.5",
			width=1.6528];
		allele_specific_binding_thresholds	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2205.5 313.5 2205.5 332.5 2388.5 332.5 2388.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2297 320.5 0 167 34 -allele_specific_binding_thresholds ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=allele_specific_binding_thresholds,
			pos="2297,323",
			rects="2205.5,313.5,2388.5,332.5",
			width=2.5417];
		rnaseq_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1915.5 313.5 1915.5 332.5 1992.5 332.5 1992.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1954 320.5 0 61 10 -rnaseq_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=rnaseq_bam,
			pos="1954,323",
			rects="1915.5,313.5,1992.5,332.5",
			width=1.0694];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1519 313.5 1519 332.5 1605 332.5 1605 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1562 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="1562,323",
			rects="1519,313.5,1605,332.5",
			width=1.1944];
		expn_val	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2612.5 313.5 2612.5 332.5 2673.5 332.5 2673.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2643 320.5 0 45 8 -expn_val ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expn_val,
			pos="2643,323",
			rects="2612.5,313.5,2673.5,332.5",
			width=0.84722];
		readcount_minimum_mapping_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1996.5 313.5 1996.5 332.5 2201.5 332.5 2201.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2099 320.5 0 189 33 -readcount_minimum_mapping_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_mapping_quality,
			pos="2099,323",
			rects="1996.5,313.5,2201.5,332.5",
			width=2.8472];
		net_chop_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2678 313.5 2678 332.5 2790 332.5 2790 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2734 320.5 0 96 18 -net_chop_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_threshold,
			pos="2734,323",
			rects="2678,313.5,2790,332.5",
			width=1.5556];
		additional_report_columns	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2794 313.5 2794 332.5 2940 332.5 2940 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2867 320.5 0 130 25 -additional_report_columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=additional_report_columns,
			pos="2867,323",
			rects="2794,313.5,2940,332.5",
			width=2.0278];
		prediction_algorithms	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2944.5 313.5 2944.5 332.5 3067.5 332.5 3067.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3006 320.5 0 107 21 -prediction_algorithms ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=prediction_algorithms,
			pos="3006,323",
			rects="2944.5,313.5,3067.5,332.5",
			width=1.7083];
		detect_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1798.5 313.5 1798.5 332.5 1911.5 332.5 1911.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1855 320.5 0 97 19 -detect_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=detect_variants_vcf,
			pos="1855,323",
			rects="1798.5,313.5,1911.5,332.5",
			width=1.5694];
		normal_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3072 313.5 3072 332.5 3146 332.5 3146 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3109 320.5 0 58 10 -normal_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cov,
			pos="3109,323",
			rects="3072,313.5,3146,332.5",
			width=1.0278];
		binding_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 974 313.5 974 332.5 1078 332.5 1078 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1026 320.5 0 88 17 -binding_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=binding_threshold,
			pos="1026,323",
			rects="974,313.5,1078,332.5",
			width=1.4444];
		top_score_metric	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3150.5 313.5 3150.5 332.5 3251.5 332.5 3251.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3201 320.5 0 85 16 -top_score_metric ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=top_score_metric,
			pos="3201,323",
			rects="3150.5,313.5,3251.5,332.5",
			width=1.4028];
		readcount_minimum_base_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1609.5 313.5 1609.5 332.5 1794.5 332.5 1794.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1702 320.5 0 169 30 -readcount_minimum_base_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_base_quality,
			pos="1702,323",
			rects="1609.5,313.5,1794.5,332.5",
			width=2.5694];
		fasta_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3256 313.5 3256 332.5 3322 332.5 3322 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3289 320.5 0 50 10 -fasta_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fasta_size,
			pos="3289,323",
			rects="3256,313.5,3322,332.5",
			width=0.91667];
		tdna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3326.5 313.5 3326.5 332.5 3385.5 332.5 3385.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3356 320.5 0 43 8 -tdna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_vaf,
			pos="3356,323",
			rects="3326.5,313.5,3385.5,332.5",
			width=0.81944];
		epitope_lengths	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3389.5 313.5 3389.5 332.5 3484.5 332.5 3484.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3437 320.5 0 79 15 -epitope_lengths ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=epitope_lengths,
			pos="3437,323",
			rects="3389.5,313.5,3484.5,332.5",
			width=1.3194];
		maximum_transcript_support_level	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3489 313.5 3489 332.5 3679 332.5 3679 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3584 320.5 0 174 32 -maximum_transcript_support_level ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=maximum_transcript_support_level,
			pos="3584,323",
			rects="3489,313.5,3679,332.5",
			width=2.6389];
		exclude_nas	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3683.5 313.5 3683.5 332.5 3760.5 332.5 3760.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3722 320.5 0 61 11 -exclude_nas ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=exclude_nas,
			pos="3722,323",
			rects="3683.5,313.5,3760.5,332.5",
			width=1.0694];
		net_chop_method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3765 313.5 3765 332.5 3869 332.5 3869 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3817 320.5 0 88 15 -net_chop_method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_method,
			pos="3817,323",
			rects="3765,313.5,3869,332.5",
			width=1.4444];
		expression_tool	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1421 313.5 1421 332.5 1515 332.5 1515 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1468 320.5 0 78 15 -expression_tool ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expression_tool,
			pos="1468,323",
			rects="1421,313.5,1515,332.5",
			width=1.3056];
	}
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1525 80.5 1525 99.5 1603 99.5 1603 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1564 87.5 0 62 11 -run pVACseq ",
		height=0.27778,
		label="run pVACseq",
		pos="1564,90",
		rects="1525,80.5,1603,99.5",
		width=1.0833];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 47.26 313.7 47.56 303.6 48 286.05 48 271 48 271 48 271 48 134 48 74.16 256.26 111.3 316 108 556.24 94.73 1318.81 \
91.69 1516.71 91.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.65 93.57 1523.65 91.1 1516.64 88.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 66.5 200.6 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="66.5,202.5",
		pos="e,1525.2,91.094 47.263,313.7 47.559,303.6 48,286.05 48,271 48,271 48,271 48,134 48,74.165 256.26,111.3 316,108 556.24,94.734 1318.8,\
91.691 1516.7,91.118"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 16 141.94 313.59 149.4 310.63 158.01 307.43 166 305 198.69 295.04 316 305.18 316 271 316 271 316 271 316 134 316 \
51.85 417.1 114.45 499 108 701.01 92.1 1337.68 90.96 1516.73 90.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.65 93.42 1523.65 90.97 1516.65 88.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 342.5 200.6 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="342.5,202.5",
		pos="e,1525.2,90.968 141.94,313.59 149.4,310.63 158.01,307.43 166,305 198.69,295.04 316,305.18 316,271 316,271 316,271 316,134 316,51.85 \
417.1,114.45 499,108 701.01,92.1 1337.7,90.965 1516.7,90.967"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 16 262.06 313.5 273.38 310.63 286.22 307.52 298 305 340.16 295.99 489 314.11 489 271 489 271 489 271 489 134 489 \
88.3 647.42 111.34 693 108 855.27 96.11 1359.99 92.2 1516.94 91.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.53 93.7 1523.51 91.21 1516.5 88.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 535 200.6 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="535,202.5",
		pos="e,1525,91.204 262.06,313.5 273.38,310.63 286.22,307.52 298,305 340.16,295.99 489,314.11 489,271 489,271 489,271 489,134 489,88.3 \
647.42,111.34 693,108 855.27,96.11 1360,92.198 1516.9,91.252"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 13 404.39 313.51 416.87 310.64 431.03 307.53 444 305 488.68 296.3 646 316.52 646 271 646 271 646 271 646 134 646 \
89.95 1329.25 89.9 1516.85 90.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.62 93.17 1523.63 90.75 1516.64 88.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 699 200.6 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="699,202.5",
		pos="e,1525.1,90.756 404.39,313.51 416.87,310.64 431.03,307.53 444,305 488.68,296.3 646,316.52 646,271 646,271 646,271 646,134 646,89.953 \
1329.2,89.902 1516.8,90.718"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 19 479.54 313.52 484.63 310.24 490.85 306.84 497 305 529.61 295.22 616.19 301.03 650 297 681.2 293.28 789 302.42 \
789 271 789 271 789 271 789 134 789 83.33 849.74 114.46 900 108 1019.47 92.64 1386.15 91.03 1517 90.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.76 93.41 1523.76 90.95 1516.76 88.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 803 200.6 0 28 7 -alleles ",
		label=alleles,
		lp="803,202.5",
		pos="e,1525.3,90.952 479.54,313.52 484.63,310.24 490.85,306.84 497,305 529.61,295.22 616.19,301.03 650,297 681.2,293.28 789,302.42 789,\
271 789,271 789,271 789,134 789,83.331 849.74,114.46 900,108 1019.5,92.643 1386.2,91.029 1517,90.955"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 13 616.51 313.56 631.79 310.42 649.67 307.1 666 305 705.08 299.97 840 310.4 840 271 840 271 840 271 840 134 840 99.98 \
1356.06 92.75 1516.79 91.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.58 93.78 1523.56 91.27 1516.54 88.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 903 200.6 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="903,202.5",
		pos="e,1525.1,91.258 616.51,313.56 631.79,310.42 649.67,307.1 666,305 705.08,299.97 840,310.4 840,271 840,271 840,271 840,134 840,99.982 \
1356.1,92.755 1516.8,91.329"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1492.5 125.5 1492.5 144.5 1635.5 144.5 1635.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1564 132.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="1564,135",
		rects="1492.5,125.5,1635.5,144.5",
		width=1.9861];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 1347.81 313.79 1352.7 293.58 1368.18 241.18 1402 215 1428.34 194.61 1442.13 203.41 1475 198 1493.07 195.03 1543.85 \
202.74 1557 190 1566.74 180.56 1567.76 164.75 1566.78 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1569.22 152.47 1565.93 145.82 1564.36 153.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1432.5 223.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="1432.5,225",
		pos="e,1565.7,144.32 1347.8,313.79 1352.7,293.58 1368.2,241.18 1402,215 1428.3,194.61 1442.1,203.41 1475,198 1493.1,195.03 1543.9,202.74 \
1557,190 1566.7,180.56 1567.8,164.75 1566.8,152.67"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 13 792.83 313.51 860.32 300.29 982 275.79 982 271 982 271 982 271 982 134 982 63.71 1068.08 115.19 1138 108 1275.11 \
93.89 1438.15 91.31 1516.86 90.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.61 93.41 1523.6 90.93 1516.6 88.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1043 200.6 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="1043,202.5",
		pos="e,1525.1,90.926 792.83,313.51 860.32,300.29 982,275.79 982,271 982,271 982,271 982,134 982,63.71 1068.1,115.19 1138,108 1275.1,93.895 \
1438.2,91.315 1516.9,90.957"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 888.74 313.58 895.76 310.4 904.11 307.05 912 305 956.48 293.42 1116 316.96 1116 271 1116 271 1116 271 1116 134 \
1116 94.08 1401.56 90.49 1516.71 90.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.51 93.12 1523.51 90.69 1516.52 88.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1139 200.6 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="1139,202.5",
		pos="e,1525,90.69 888.74,313.58 895.76,310.4 904.11,307.05 912,305 956.48,293.42 1116,316.96 1116,271 1116,271 1116,271 1116,134 1116,\
94.076 1401.6,90.492 1516.7,90.67"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 954.28 313.53 960.1 310.26 967.16 306.86 974 305 1017.29 293.24 1173 315.86 1173 271 1173 271 1173 271 1173 134 \
1173 99.79 1412.52 92.79 1516.63 91.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.6 93.81 1523.57 91.27 1516.54 88.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1190 200.6 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="1190,202.5",
		pos="e,1525.1,91.255 954.28,313.53 960.1,310.26 967.16,306.86 974,305 1017.3,293.24 1173,315.86 1173,271 1173,271 1173,271 1173,134 1173,\
99.792 1412.5,92.79 1516.6,91.363"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1716 260.5 1716 279.5 1856 279.5 1856 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1786 267.5 0 124 22 -bam_readcount workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="1786,270",
		rects="1716,260.5,1856,279.5",
		width=1.9444];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 2418.94 313.59 2409.95 310.24 2399.12 306.77 2389 305 2340.72 296.57 1994.35 312.92 1948 297 1941.69 294.83 1942.21 \
290.44 1936 288 1906.73 276.51 1895.44 282.72 1863.44 280.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1864.03 277.84 1856.83 279.61 1863.56 282.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1980.5 290.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="1980.5,292.5",
		pos="e,1855.3,279.47 2418.9,313.59 2410,310.24 2399.1,306.77 2389,305 2340.7,296.57 1994.4,312.92 1948,297 1941.7,294.83 1942.2,290.44 \
1936,288 1906.7,276.51 1895.4,282.72 1863.4,280.24"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1175.12 313.61 1194.85 306.06 1217 292.75 1217 271 1217 271 1217 271 1217 134 1217 104.13 1422.09 94.77 1516.93 \
92.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.76 94.5 1523.69 91.86 1516.63 89.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1262 200.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1262,202.5",
		pos="e,1525.2,91.814 1175.1,313.61 1194.8,306.06 1217,292.75 1217,271 1217,271 1217,271 1217,134 1217,104.13 1422.1,94.774 1516.9,92.043"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1255.82 313.68 1277.67 301.17 1316 278.2 1316 271 1316 271 1316 271 1316 134 1316 113.84 1444.81 100.41 1516.77 \
94.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.96 96.91 1523.74 93.91 1516.57 92.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1333.5 200.6 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1333.5,202.5",
		pos="e,1525.2,93.786 1255.8,313.68 1277.7,301.17 1316,278.2 1316,271 1316,271 1316,271 1316,134 1316,113.84 1444.8,100.41 1516.8,94.472"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1571.5 170.5 1571.5 189.5 1714.5 189.5 1714.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1643 177.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="1643,180",
		rects="1571.5,170.5,1714.5,189.5",
		width=1.9861];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 2522.28 313.54 2511.17 310.35 2498.07 307.01 2486 305 2432.83 296.16 2418.36 304.59 2365 297 2196.95 273.11 2159.66 \
241.5 1992 215 1900.13 200.48 1793.6 191.18 1722.64 186.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1722.83 183.6 1715.68 185.54 1722.48 188.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2189.5 245.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="2189.5,247.5",
		pos="e,1714.2,185.44 2522.3,313.54 2511.2,310.35 2498.1,307.01 2486,305 2432.8,296.16 2418.4,304.59 2365,297 2197,273.11 2159.7,241.5 \
1992,215 1900.1,200.48 1793.6,191.18 1722.6,186.04"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 1936.82 313.67 1929.36 310.41 1920.42 306.99 1912 305 1869.05 294.82 1853.24 315.14 1813 297 1809.76 295.54 1804.37 \
290.59 1799.25 285.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1801.16 283.85 1794.56 280.48 1797.62 287.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1822.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="1822.5,292.5",
		pos="e,1793.5,279.38 1936.8,313.67 1929.4,310.41 1920.4,306.99 1912,305 1869,294.82 1853.2,315.14 1813,297 1809.8,295.54 1804.4,290.59 \
1799.3,285.4"];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 1560.11 313.57 1556.27 294.19 1549.63 245.78 1571 215 1578.04 204.85 1588.95 197.64 1600.15 192.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1600.97 194.87 1606.52 189.95 1599.11 190.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1588 245.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1588,247.5",
		pos="e,1607.9,189.37 1560.1,313.57 1556.3,294.19 1549.6,245.78 1571,215 1578,204.85 1588.9,197.64 1600.2,192.56"];
	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 19 1560.73 313.56 1558.42 298.96 1553.01 268.13 1545 243 1540.89 230.1 1542.21 224.93 1533 215 1528.91 210.59 1488.12 \
195.14 1485 190 1480.39 182.4 1484.41 178.87 1485 170 1486.34 149.87 1479.05 141.26 1491 125 1498.4 114.93 1509.53 107.75 1520.88 \
102.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1521.77 104.95 1527.34 100.04 1519.93 100.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1546 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1546,202.5",
		pos="e,1528.7,99.47 1560.7,313.56 1558.4,298.96 1553,268.13 1545,243 1540.9,230.1 1542.2,224.93 1533,215 1528.9,210.59 1488.1,195.14 \
1485,190 1480.4,182.4 1484.4,178.87 1485,170 1486.3,149.87 1479.1,141.26 1491,125 1498.4,114.93 1509.5,107.75 1520.9,102.66"];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1580.82 313.62 1589.26 310.28 1599.45 306.8 1609 305 1626.26 301.75 1912.74 309.57 1925 297 2015.62 204.05 1775.21 \
160.56 1643.5 144.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1644.12 141.79 1636.88 143.38 1643.53 146.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1964 223.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1964,225",
		pos="e,1635.4,143.19 1580.8,313.62 1589.3,310.28 1599.4,306.8 1609,305 1626.3,301.75 1912.7,309.57 1925,297 2015.6,204.05 1775.2,160.56 \
1643.5,144.19"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1627 215.5 1627 234.5 1871 234.5 1871 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1749 222.5 0 228 46 -Add snv and indel bam-readcount files to a vcf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="1749,225",
		rects="1627,215.5,1871,234.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1567.88 313.62 1579.99 297.05 1609.52 260.24 1644 243 1648.61 240.7 1653.46 238.69 1658.44 236.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1659 239.35 1664.93 234.89 1657.51 234.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1645 268.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1645,270",
		pos="e,1666.4,234.43 1567.9,313.62 1580,297.05 1609.5,260.24 1644,243 1648.6,240.7 1653.5,238.69 1658.4,236.95"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 1583.85 313.61 1591.72 310.71 1600.71 307.56 1609 305 1637.94 296.06 1645.33 294.08 1675 288 1687.89 285.36 1701.7 \
282.93 1715.05 280.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1715.26 283.23 1721.79 279.72 1714.49 278.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1690.5 290.6 0 31 6 -sample ",
		label=sample,
		lp="1690.5,292.5",
		pos="e,1723.3,279.48 1583.9,313.61 1591.7,310.71 1600.7,307.56 1609,305 1637.9,296.06 1645.3,294.08 1675,288 1687.9,285.36 1701.7,282.93 \
1715,280.78"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 2628.87 313.65 2622.92 310.48 2615.8 307.12 2609 305 2557.57 288.97 2369 324.87 2369 271 2369 271 2369 271 2369 \
134 2369 95.81 1783.56 91.48 1611.2 91.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.35 88.59 1604.34 91.02 1611.33 93.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2387 200.6 0 36 8 -expn_val ",
		label=expn_val,
		lp="2387,202.5",
		pos="e,1602.8,91.019 2628.9,313.65 2622.9,310.48 2615.8,307.12 2609,305 2557.6,288.97 2369,324.87 2369,271 2369,271 2369,271 2369,134 \
2369,95.807 1783.6,91.483 1611.2,91.038"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 2052.7 313.52 2034.19 310.41 2012.64 307.13 1993 305 1930.6 298.24 1913.31 310.45 1852 297 1851.48 296.89 1832.62 \
289.45 1815.19 282.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1816.17 280.31 1808.76 280.01 1814.37 284.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1895.5 290.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="1895.5,292.5",
		pos="e,1807.3,279.46 2052.7,313.52 2034.2,310.41 2012.6,307.13 1993,305 1930.6,298.24 1913.3,310.45 1852,297 1851.5,296.89 1832.6,289.45 \
1815.2,282.56"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 2705.39 313.51 2659.86 299.89 2576 274.36 2576 271 2576 271 2576 271 2576 134 2576 69.3 2350.6 111.65 2286 108 \
2031.67 93.62 1726.29 91.36 1611.07 91.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.3 88.59 1604.29 91.02 1611.28 93.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2616.5 200.6 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="2616.5,202.5",
		pos="e,1602.8,91.015 2705.4,313.51 2659.9,299.89 2576,274.36 2576,271 2576,271 2576,271 2576,134 2576,69.297 2350.6,111.65 2286,108 2031.7,\
93.621 1726.3,91.358 1611.1,91.036"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 2813.13 313.51 2790.35 306.55 2769 293.92 2769 271 2769 271 2769 271 2769 134 2769 104.48 1833.2 93.6 1610.94 \
91.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.26 88.98 1604.24 91.36 1611.22 93.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2823.5 200.6 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="2823.5,202.5",
		pos="e,1602.7,91.347 2813.1,313.51 2790.4,306.55 2769,293.92 2769,271 2769,271 2769,271 2769,134 2769,104.48 1833.2,93.596 1610.9,91.426"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 2985.42 313.58 2969.09 305.38 2949 291.18 2949 271 2949 271 2949 271 2949 134 2949 99.77 1853.53 92.41 1611.11 \
91.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.38 88.76 1604.37 91.17 1611.35 93.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2993.5 200.6 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="2993.5,202.5",
		pos="e,1602.9,91.165 2985.4,313.58 2969.1,305.38 2949,291.18 2949,271 2949,271 2949,271 2949,134 2949,99.768 1853.5,92.414 1611.1,91.206"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1815.5 313.61 1806.29 309.91 1797.33 304.61 1791 297 1788.75 294.3 1787.4 290.88 1786.61 287.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1789.06 287.29 1785.79 280.63 1784.19 287.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1797.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="1797.5,292.5",
		pos="e,1785.6,279.13 1815.5,313.61 1806.3,309.91 1797.3,304.61 1791,297 1788.7,294.3 1787.4,290.88 1786.6,287.43"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 3100.77 313.79 3092.19 304.33 3080 287.91 3080 271 3080 271 3080 271 3080 134 3080 96.33 1867.98 91.65 1611.37 \
91.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.52 88.63 1604.51 91.06 1611.51 93.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3103.5 200.6 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="3103.5,202.5",
		pos="e,1603,91.059 3100.8,313.79 3092.2,304.33 3080,287.91 3080,271 3080,271 3080,271 3080,134 3080,96.332 1868,91.647 1611.4,91.077"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 3192.16 313.5 3183.31 304.04 3171 287.85 3171 271 3171 271 3171 271 3171 134 3171 93.92 1876.61 91.15 1611.21 \
91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.44 88.55 1604.44 91 1611.44 93.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3206 200.6 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="3206,202.5",
		pos="e,1602.9,90.996 3192.2,313.5 3183.3,304.04 3171,287.85 3171,271 3171,271 3171,271 3171,134 3171,93.923 1876.6,91.147 1611.2,91"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1702.69 313.77 1703.79 306.01 1706.64 294.61 1714 288 1715.84 286.35 1717.8 284.85 1719.87 283.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1721 285.67 1725.92 280.12 1718.61 281.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1749.5 290.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="1749.5,292.5",
		pos="e,1727.2,279.39 1702.7,313.77 1703.8,306.01 1706.6,294.61 1714,288 1715.8,286.35 1717.8,284.85 1719.9,283.49"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 3284.35 313.62 3279.32 303.74 3272 286.68 3272 271 3272 271 3272 271 3272 134 3272 91.25 1885.99 90.63 1611.07 \
90.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.39 88.47 1604.4 90.93 1611.4 93.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3293 200.6 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="3293,202.5",
		pos="e,1602.9,90.933 3284.4,313.62 3279.3,303.74 3272,286.68 3272,271 3272,271 3272,271 3272,134 3272,91.247 1886,90.626 1611.1,90.923"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 3352.17 313.53 3348.03 303.57 3342 286.43 3342 271 3342 271 3342 271 3342 134 3342 125.24 3268.55 117.01 3106 \
108 2804.47 91.29 1836.87 90.83 1611.32 90.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.5 88.51 1604.5 90.96 1611.5 93.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3360 200.6 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="3360,202.5",
		pos="e,1603,90.961 3352.2,313.53 3348,303.57 3342,286.43 3342,271 3342,271 3342,271 3342,134 3342,125.24 3268.6,117.01 3106,108 2804.5,\
91.294 1836.9,90.83 1611.3,90.956"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 10 3430.47 313.5 3423.67 303.78 3414 287.12 3414 271 3414 271 3414 271 3414 134 3414 87.47 1898.35 89.94 1610.79 \
90.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.15 88.38 1604.15 90.85 1611.16 93.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3447.5 200.6 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="3447.5,202.5",
		pos="e,1602.6,90.857 3430.5,313.5 3423.7,303.78 3414,287.12 3414,271 3414,271 3414,271 3414,134 3414,87.473 1898.3,89.944 1610.8,90.831"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 13 3566.45 313.51 3551.7 305.01 3533 290.41 3533 271 3533 271 3533 271 3533 134 3533 71.73 3316.19 111.2 3254 108 \
2921.31 90.85 1849.2 90.75 1611.13 90.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.2 88.5 1604.2 90.95 1611.2 93.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3604 200.6 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="3604,202.5",
		pos="e,1602.7,90.953 3566.4,313.51 3551.7,305.01 3533,290.41 3533,271 3533,271 3533,271 3533,134 3533,71.731 3316.2,111.2 3254,108 2921.3,\
90.855 1849.2,90.75 1611.1,90.945"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 13 3717.35 313.62 3712.32 303.74 3705 286.68 3705 271 3705 271 3705 271 3705 134 3705 64.43 3462.5 111.21 3393 108 \
3031.11 91.26 1861.37 90.86 1611.32 90.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.33 88.52 1604.33 90.97 1611.33 93.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3730.5 200.6 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="3730.5,202.5",
		pos="e,1602.8,90.97 3717.4,313.62 3712.3,303.74 3705,286.68 3705,271 3705,271 3705,271 3705,134 3705,64.426 3462.5,111.21 3393,108 3031.1,\
91.262 1861.4,90.856 1611.3,90.966"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 13 3810.19 313.54 3803.09 303.87 3793 287.24 3793 271 3793 271 3793 271 3793 134 3793 131.31 3647.07 113.62 3549 \
108 3350.21 96.62 1892.62 91.93 1611.02 91.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1611.17 88.68 1604.16 91.11 1611.16 93.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3829.5 200.6 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="3829.5,202.5",
		pos="e,1602.7,91.104 3810.2,313.54 3803.1,303.87 3793,287.24 3793,271 3793,271 3793,271 3793,134 3793,131.31 3647.1,113.62 3549,108 3350.2,\
96.615 1892.6,91.931 1611,91.128"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 1469.42 313.69 1472.7 295.42 1481.36 252.6 1492 243 1505.78 230.56 1516.3 243.1 1533 235 1555.68 224 1553.63 209.63 \
1576 198 1580.3 195.77 1584.9 193.81 1589.62 192.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1590.3 194.47 1596.18 189.95 1588.76 189.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1524 245.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="1524,247.5",
		pos="e,1597.6,189.47 1469.4,313.69 1472.7,295.42 1481.4,252.6 1492,243 1505.8,230.56 1516.3,243.1 1533,235 1555.7,224 1553.6,209.63 1576,\
198 1580.3,195.77 1584.9,193.81 1589.6,192.11"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1468 313.7 1468 303.6 1468 286.05 1468 271 1468 271 1468 271 1468 201.5 1468 173.71 1495.8 156.86 1521.47 147.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1522.12 149.59 1527.91 144.96 1520.5 144.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1500 223.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="1500,225",
		pos="e,1529.3,144.46 1468,313.7 1468,303.6 1468,286.05 1468,271 1468,271 1468,271 1468,201.5 1468,173.71 1495.8,156.86 1521.5,147.23"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1627.39 170.5 1615.81 164.2 1599.85 155.51 1586.84 148.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1588.22 146.4 1580.9 145.2 1585.88 150.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1616.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1616.5,157.5",
		pos="e,1579.6,144.48 1627.4,170.5 1615.8,164.2 1599.9,155.51 1586.8,148.43"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1525.25 89.34 1442 89.53 1240.06 87.22 1073 63 1062.21 61.44 1050.66 59 1040.07 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1040.67 54.09 1033.29 54.78 1039.5 58.85 ",
		pos="e,1031.8,54.418 1525.3,89.336 1442,89.535 1240.1,87.217 1073,63 1062.2,61.436 1050.7,59.004 1040.1,56.464"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1525.13 87.65 1462.51 85.1 1335.52 78.38 1229 63 1216.9 61.25 1203.88 58.76 1191.94 56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1192.71 53.87 1185.35 54.78 1191.66 58.66 ",
		pos="e,1183.9,54.454 1525.1,87.648 1462.5,85.098 1335.5,78.383 1229,63 1216.9,61.252 1203.9,58.756 1191.9,56.213"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1525.34 84.99 1485.87 80.63 1422.91 72.93 1369 63 1358.93 61.15 1348.16 58.8 1338.09 56.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1338.68 54.07 1331.3 54.83 1337.54 58.83 ",
		pos="e,1329.8,54.477 1525.3,84.992 1485.9,80.631 1422.9,72.933 1369,63 1358.9,61.145 1348.2,58.798 1338.1,56.445"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 4 1538.71 80.5 1518.81 73.82 1490.92 64.45 1469.22 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1470.09 54.87 1462.67 54.96 1468.53 59.51 ",
		pos="e,1461.2,54.478 1538.7,80.505 1518.8,73.82 1490.9,64.449 1469.2,57.16"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 4 1564 80.71 1564 75.59 1564 68.85 1564 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1566.45 62.78 1564 55.78 1561.55 62.78 ",
		pos="e,1564,54.265 1564,80.709 1564,75.593 1564,68.848 1564,62.666"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 4 1588.7 80.5 1608.13 73.82 1635.37 64.45 1656.56 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.1 59.56 1662.92 54.97 1655.51 54.93 ",
		pos="e,1664.4,54.478 1588.7,80.505 1608.1,73.82 1635.4,64.449 1656.6,57.16"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1602.77 84.91 1641.3 80.56 1702 72.93 1754 63 1763.56 61.17 1773.78 58.86 1783.35 56.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1783.88 58.92 1790.08 54.86 1782.7 54.17 ",
		pos="e,1791.6,54.49 1602.8,84.909 1641.3,80.558 1702,72.934 1754,63 1763.6,61.173 1773.8,58.858 1783.3,56.529"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 7 1602.85 88.4 1664.14 86.9 1786.81 81.61 1889 63 1897.42 61.47 1906.35 59.22 1914.66 56.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1915.24 59.25 1921.26 54.92 1913.85 54.55 ",
		pos="e,1922.7,54.496 1602.8,88.404 1664.1,86.902 1786.8,81.614 1889,63 1897.4,61.467 1906.4,59.225 1914.7,56.868"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1602.95 88.69 1679.81 87.63 1856.24 83.02 2003 63 2015.2 61.34 2028.32 58.82 2040.29 56.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2040.59 58.66 2046.89 54.75 2039.53 53.88 ",
		pos="e,2048.4,54.423 1603,88.686 1679.8,87.627 1856.2,83.017 2003,63 2015.2,61.336 2028.3,58.816 2040.3,56.221"];
	add_transcript_expression_data_to_vcf -> pvacseq	[_draw_="c 7 -#000000 B 4 1564 125.71 1564 120.59 1564 113.85 1564 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1566.45 107.78 1564 100.78 1561.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1583 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="1583,112.5",
		pos="e,1564,99.265 1564,125.71 1564,120.59 1564,113.85 1564,107.67"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1728.06 215.5 1711.94 208.97 1689.49 199.86 1671.7 192.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1672.71 190.41 1665.3 190.05 1670.87 194.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1711.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="1711.5,202.5",
		pos="e,1663.9,189.48 1728.1,215.5 1711.9,208.97 1689.5,199.86 1671.7,192.64"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1762.56 260.51 1758.88 258.25 1755.48 255.45 1753 252 1751.07 249.32 1749.91 246.08 1749.24 242.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1751.69 242.69 1748.57 235.97 1746.82 243.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1805 245.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="1805,247.5",
		pos="e,1748.4,234.46 1762.6,260.51 1758.9,258.25 1755.5,255.45 1753,252 1751.1,249.32 1749.9,246.08 1749.2,242.82"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1846.16 260.51 1855.93 256.66 1860.88 251.08 1854 243 1852.18 240.86 1849.3 238.98 1845.65 237.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1846.57 235.08 1839.16 234.99 1844.9 239.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1863.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="1863.5,247.5",
		pos="e,1837.7,234.48 1846.2,260.51 1855.9,256.66 1860.9,251.08 1854,243 1852.2,240.86 1849.3,238.98 1845.6,237.35"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1716.37 262.27 1684.17 258.81 1652.43 254.75 1650 252 1646.03 247.5 1644.83 243.74 1645.73 240.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1647.5 242.3 1650.35 235.46 1643.85 239.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1699 245.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="1699,247.5",
		pos="e,1651.4,234.33 1716.4,262.27 1684.2,258.81 1652.4,254.75 1650,252 1646,247.5 1644.8,243.74 1645.7,240.6"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1573 215.5 1573 234.5 1623 234.5 1623 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1598 222.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="1598,225",
		rects="1573,215.5,1623,234.5",
		width=0.69444];
	default1 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1606.68 215.71 1612.78 209.88 1621.09 201.93 1628.23 195.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1629.89 196.92 1633.26 190.31 1626.5 193.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1644.5 200.6 0 41 9 -data_type ",
		label=data_type,
		lp="1644.5,202.5",
		pos="e,1634.4,189.27 1606.7,215.71 1612.8,209.88 1621.1,201.93 1628.2,195.12"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1485 170.5 1485 189.5 1557 189.5 1557 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1521 177.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="1521,180",
		rects="1485,170.5,1557,189.5",
		width=1];
	default2 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 1517.79 170.56 1516.28 165.09 1515.5 158.06 1519 153 1519.85 151.77 1520.8 150.63 1521.83 149.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1523.3 151.53 1527.32 145.3 1520.29 147.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1539.5 155.6 0 41 9 -data_type ",
		label=data_type,
		lp="1539.5,157.5",
		pos="e,1528.5,144.38 1517.8,170.56 1516.3,165.09 1515.5,158.06 1519,153 1519.8,151.77 1520.8,150.63 1521.8,149.58"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1860.5 260.5 1860.5 279.5 1907.5 279.5 1907.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1884 267.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="1884,270",
		rects="1860.5,260.5,1907.5,279.5",
		width=0.65278];
	default3 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1882.03 260.61 1880.18 254.72 1876.82 247.18 1871 243 1867.4 240.41 1861.76 238.22 1854.83 236.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1855.7 234.04 1848.33 234.81 1854.57 238.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1898.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="1898.5,247.5",
		pos="e,1846.9,234.46 1882,260.61 1880.2,254.72 1876.8,247.18 1871,243 1867.4,240.41 1861.8,238.22 1854.8,236.35"];
}
