digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 491 593 491 0 ",
		bb="0,0,491,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 530 8 585 400 585 400 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 573 0 84 15 -Workflow Inputs ",
			bb="8,530,400,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 538.5 16.5 557.5 89.5 557.5 89.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 545.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,548",
			rects="16.5,538.5,89.5,557.5",
			width=1.0139];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 172.5 538.5 172.5 557.5 241.5 557.5 241.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 207 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="207,548",
			rects="172.5,538.5,241.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 538.5 94 557.5 168 557.5 168 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 131 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="131,548",
			rects="94,538.5,168,557.5",
			width=1.0278];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 328.5 538.5 328.5 557.5 391.5 557.5 391.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 360 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="360,548",
			rects="328.5,538.5,391.5,557.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 246 538.5 246 557.5 324 557.5 324 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 285 545.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="285,548",
			rects="246,538.5,324,557.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 158 8 158 63 333 63 333 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 212 15 0 92 16 -Workflow Outputs ",
			bb="158,8,333,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="212,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 166.5 35.5 166.5 54.5 249.5 54.5 249.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 208 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="208,45",
			rects="166.5,35.5,249.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 253.5 35.5 253.5 54.5 324.5 54.5 324.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 289 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="289,45",
			rects="253.5,35.5,324.5,54.5",
			width=0.98611];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 168.5 440.5 168.5 459.5 301.5 459.5 301.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 235 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="235,450",
		rects="168.5,440.5,301.5,459.5",
		width=1.8472];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 50.82 538.56 47.96 525.35 44.74 499.8 58 485 71.8 469.6 118.54 461.04 160.53 456.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 160.64 458.81 167.34 455.63 160.12 453.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 81 493.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="81,495",
		pos="e,168.85,455.47 50.817,538.56 47.957,525.35 44.738,499.8 58,485 71.803,469.6 118.54,461.04 160.53,456.36"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 198.5 80.5 198.5 99.5 299.5 99.5 299.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 249 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="249,90",
		rects="198.5,80.5,299.5,99.5",
		width=1.4028];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 48.08 538.66 42.75 528.81 35 511.77 35 496 35 496 35 496 35 134 35 102.22 126.85 93.63 190.21 91.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 190.12 93.93 197.04 91.27 189.97 89.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 44.5 313.1 0 19 3 -bam ",
		label=bam,
		lp="44.5,315",
		pos="e,198.56,91.224 48.081,538.66 42.752,528.81 35,511.77 35,496 35,496 35,496 35,134 35,102.22 126.85,93.626 190.21,91.476"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 212.22 538.66 217.12 530.43 224.24 517.32 228 505 231.71 492.83 233.46 478.53 234.28 467.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 236.72 467.87 234.69 460.74 231.83 467.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="254,495",
		pos="e,234.78,459.23 212.22,538.66 217.12,530.43 224.24,517.32 228,505 231.71,492.83 233.46,478.53 234.28,467.71"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 106 485.5 106 504.5 228 504.5 228 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="167,495",
		rects="106,485.5,228,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 136.94 538.58 142.19 531.15 149.95 520.15 156.28 511.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.26 512.63 160.29 505.5 154.25 509.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 177.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="177.5,517.5",
		pos="e,161.17,504.26 136.94,538.58 142.19,531.15 149.95,520.15 156.28,511.19"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 178.5 215.5 178.5 234.5 319.5 234.5 319.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 249 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="249,225",
		rects="178.5,215.5,319.5,234.5",
		width=1.9583];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 10 121.57 538.62 112.13 529.25 99 513.14 99 496 99 496 99 496 99 269 99 252.19 134.26 241.57 170.58 235.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 170.85 237.53 177.34 233.95 170.03 232.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="122.5,382.5",
		pos="e,178.83,233.69 121.57,538.62 112.13,529.25 99,513.14 99,496 99,496 99,496 99,269 99,252.19 134.26,241.57 170.58,235.09"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 256.5 350.5 256.5 369.5 385.5 369.5 385.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="321,360",
		rects="256.5,350.5,385.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 373.92 538.76 386.81 529.95 404 514.71 404 496 404 496 404 496 404 404 404 392.03 405.64 386.28 397 378 395.42 \
376.49 393.74 375.1 391.97 373.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 393.31 371.77 386.06 370.23 390.77 375.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 424 448.1 0 40 9 -reference ",
		label=reference,
		lp="424,450",
		pos="e,384.77,369.44 373.92,538.76 386.81,529.95 404,514.71 404,496 404,496 404,496 404,404 404,392.03 405.64,386.28 397,378 395.42,376.49 \
393.74,375.1 391.97,373.82"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 358.86 538.53 356.64 525.28 350.51 499.68 335 485 323.76 474.37 309.07 467.05 294.42 462.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.16 459.68 287.75 459.91 293.68 464.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 368 493.1 0 40 9 -reference ",
		label=reference,
		lp="368,495",
		pos="e,286.3,459.45 358.86,538.53 356.64,525.28 350.51,499.68 335,485 323.76,474.37 309.07,467.05 294.42,462.02"];
	reference -> filter	[_draw_="c 7 -#000000 B 10 391.32 542.56 417.64 536.85 451 524.07 451 496 451 496 451 496 451 134 451 104.46 367.34 95.14 307.7 92.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 308.07 89.8 300.96 91.94 307.85 94.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 471 313.1 0 40 9 -reference ",
		label=reference,
		lp="471,315",
		pos="e,299.45,91.87 391.32,542.56 417.64,536.85 451,524.07 451,496 451,496 451,496 451,134 451,104.46 367.34,95.135 307.7,92.237"];
	reference -> region_filter	[_draw_="c 7 -#000000 B 19 358.59 538.52 353.94 510.66 339.41 423.61 339 423 325.57 403.19 315.37 403.51 293 395 274.42 387.94 261.74 402.26 \
249 387 241.6 378.13 249 372.56 249 361 249 361 249 361 249 269 249 260.31 249 250.63 249 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.45 242.76 249 235.76 246.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 269 380.6 0 40 9 -reference ",
		label=reference,
		lp="269,382.5",
		pos="e,249,234.24 358.59,538.52 353.94,510.66 339.41,423.61 339,423 325.57,403.19 315.37,403.51 293,395 274.42,387.94 261.74,402.26 249,\
387 241.6,378.13 249,372.56 249,361 249,361 249,361 249,269 249,260.31 249,250.63 249,242.65"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 285.8 538.78 286.61 526.31 286.63 502.25 277 485 272.31 476.6 264.63 469.47 257.11 463.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 258.76 462.1 251.6 460.18 256 466.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 308.5 493.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="308.5,495",
		pos="e,250.35,459.33 285.8,538.78 286.61,526.31 286.63,502.25 277,485 272.31,476.6 264.63,469.47 257.11,463.94"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 218 125.5 218 144.5 280 144.5 280 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 249 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="249,135",
		rects="218,125.5,280,144.5",
		width=0.86111];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 249 125.71 249 120.59 249 113.85 249 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.45 107.78 249 100.78 246.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="255.5,112.5",
		pos="e,249,99.265 249,125.71 249,120.59 249,113.85 249,107.67"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 268.5 305.5 268.5 324.5 333.5 324.5 333.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="301,315",
		rects="268.5,305.5,333.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 317.14 350.71 314.65 345.36 311.33 338.22 308.35 331.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 310.66 330.95 305.48 325.64 306.21 333.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318.5 335.6 0 13 4 -file ",
		label=file,
		lp="318.5,337.5",
		pos="e,304.84,324.27 317.14,350.71 314.65,345.36 311.33,338.22 308.35,331.81"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 259 260.5 259 279.5 321 279.5 321 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 290 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="290,270",
		rects="259,260.5,321,279.5",
		width=0.86111];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 282.09 260.71 276.54 254.88 268.96 246.93 262.46 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.53 238.74 257.93 235.36 260.98 242.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 279.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="279.5,247.5",
		pos="e,256.88,234.27 282.09,260.71 276.54,254.88 268.96,246.93 262.46,240.12"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 241.5 395.5 241.5 414.5 290.5 414.5 290.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 266 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="266,405",
		rects="241.5,395.5,290.5,414.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 7 233.76 440.66 233.38 435.23 233.74 428.22 237 423 237.68 421.92 238.45 420.9 239.3 419.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 240.88 421.8 244.6 415.38 237.69 418.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 289.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="289.5,427.5",
		pos="e,245.75,414.4 233.76,440.66 233.38,435.23 233.74,428.22 237,423 237.68,421.92 238.45,420.9 239.3,419.93"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 241.09 80.71 235.54 74.88 227.96 66.93 221.46 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 223.53 58.74 216.93 55.36 219.98 62.12 ",
		pos="e,215.88,54.265 241.09,80.709 235.54,74.879 227.96,66.934 221.46,60.117"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 256.71 80.71 262.14 74.88 269.53 66.93 275.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.31 62.17 280.28 55.37 273.72 58.83 ",
		pos="e,281.31,54.265 256.71,80.709 262.14,74.879 269.53,66.934 275.87,60.117"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 168.58 485.64 170.08 479.92 172.89 472.58 178 468 179.96 466.24 182.1 464.67 184.36 463.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 185.07 465.65 190.1 460.2 182.77 461.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 205 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="205,472.5",
		pos="e,191.43,459.49 168.58,485.64 170.08,479.92 172.89,472.58 178,468 179.96,466.24 182.1,464.67 184.36,463.26"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 184.5 170.5 184.5 189.5 313.5 189.5 313.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 249 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="249,180",
		rects="184.5,170.5,313.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 249 215.71 249 210.59 249 203.85 249 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.45 197.78 249 190.78 246.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="255.5,202.5",
		pos="e,249,189.27 249,215.71 249,210.59 249,203.85 249,197.67"];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 249 170.71 249 165.59 249 158.85 249 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.45 152.78 249 145.78 246.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 255.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="255.5,157.5",
		pos="e,249,144.27 249,170.71 249,165.59 249,158.85 249,152.67"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 278.35 395.54 282.13 392.87 286.28 389.87 290 387 295.05 383.11 300.41 378.71 305.23 374.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 306.5 376.79 310.24 370.39 303.32 373.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 349 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="349,382.5",
		pos="e,311.39,369.4 278.35,395.54 282.13,392.87 286.28,389.87 290,387 295.05,383.11 300.41,378.71 305.23,374.65"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 298.88 305.71 297.54 300.47 295.76 293.53 294.15 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 296.6 286.91 292.49 280.73 291.85 288.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 302.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="302.5,292.5",
		pos="e,292.11,279.27 298.88,305.71 297.54,300.47 295.76,293.53 294.15,287.24"];
}