digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 458 522 458 522 0 ",
		bb="0,0,522,458",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 395 8 450 514 450 514 395 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 438 0 84 15 -Workflow Inputs ",
			bb="8,395,514,450",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,440.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 312.5 403.5 312.5 422.5 385.5 422.5 385.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 349 410.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="349,413",
			rects="312.5,403.5,385.5,422.5",
			width=1.0139];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98 403.5 98 422.5 172 422.5 172 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 135 410.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="135,413",
			rects="98,403.5,172,422.5",
			width=1.0278];
		docm_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 244 403.5 244 422.5 308 422.5 308 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 276 410.5 0 48 8 -docm_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_vcf,
			pos="276,413",
			rects="244,403.5,308,422.5",
			width=0.88889];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 403.5 16 422.5 94 422.5 94 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 55 410.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="55,413",
			rects="16,403.5,94,422.5",
			width=1.0833];
		filter_docm_variants	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 390 403.5 390 422.5 506 422.5 506 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 448 410.5 0 100 20 -filter_docm_variants ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filter_docm_variants,
			pos="448,413",
			rects="390,403.5,506,422.5",
			width=1.6111];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 176.5 403.5 176.5 422.5 239.5 422.5 239.5 403.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 208 410.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="208,413",
			rects="176.5,403.5,239.5,422.5",
			width=0.875];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 258 8 258 63 384 63 384 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 312 15 0 92 16 -Workflow Outputs ",
			bb="258,8,384,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="312,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		docm_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 266.5 35.5 266.5 54.5 375.5 54.5 375.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 42.5 0 93 17 -docm_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=docm_variants_vcf,
			pos="321,45",
			rects="266.5,35.5,375.5,54.5",
			width=1.5139];
	}
	GATK_haplotype_caller	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 134 350.5 134 369.5 284 369.5 284 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 209 357.5 0 134 26 -HaplotypeCaller (GATK 3.6) ",
		height=0.27778,
		label="HaplotypeCaller (GATK 3.6)",
		pos="209,360",
		rects="134,350.5,284,369.5",
		width=2.0833];
	tumor_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 339.14 403.67 329.34 395.83 313.56 384.37 298 378 291.83 375.47 285.26 373.32 278.59 371.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 279.59 369.21 272.2 369.84 278.37 373.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 323.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="323.5,382.5",
		pos="e,270.74,369.46 339.14,403.67 329.34,395.83 313.56,384.37 298,378 291.83,375.47 285.26,373.32 278.59,371.48"];
	docm_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 218.5 170.5 218.5 189.5 423.5 189.5 423.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 177.5 0 189 38 -Filter variants from the DoCM detector ",
		height=0.27778,
		label="Filter variants from the DoCM detector",
		pos="321,180",
		rects="218.5,170.5,423.5,189.5",
		width=2.8472];
	tumor_bam -> docm_filter	[_draw_="c 7 -#000000 B 13 348.47 403.7 347.88 393.61 347 376.06 347 361 347 361 347 361 347 224 347 212.03 346.27 208.19 340 198 339.45 \
197.11 338.84 196.24 338.19 195.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.19 193.94 333.6 190.52 336.62 197.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370 290.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="370,292.5",
		pos="e,332.57,189.42 348.47,403.7 347.88,393.61 347,376.06 347,361 347,361 347,361 347,224 347,212.03 346.27,208.19 340,198 339.45,197.11 \
338.84,196.24 338.19,195.39"];
	interval_list -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 139.25 403.59 143.53 395.92 150.8 384.78 160 378 162.5 376.15 165.22 374.5 168.05 373.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 169.03 375.26 174.36 370.1 166.98 370.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 183.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="183.5,382.5",
		pos="e,175.74,369.47 139.25,403.59 143.53,395.92 150.8,384.78 160,378 162.5,376.15 165.22,374.5 168.05,373.01"];
	docm_vcf -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 271.14 403.75 266.34 396.19 258.36 385.12 249 378 246.64 376.2 244.06 374.56 241.39 373.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.88 371.06 235.52 370.11 240.68 375.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 277.5 380.6 0 39 8 -docm_vcf ",
		label=docm_vcf,
		lp="277.5,382.5",
		pos="e,234.17,369.43 271.14,403.75 266.34,396.19 258.36,385.12 249,378 246.64,376.2 244.06,374.56 241.39,373.06"];
	normal_bam -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 7 63.02 403.51 71.06 395.55 84.21 384 98 378 106.8 374.17 116.32 371.19 125.95 368.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 126.28 371.3 132.58 367.39 125.22 366.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 123.5 380.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="123.5,382.5",
		pos="e,134.06,367.06 63.018,403.51 71.064,395.55 84.212,384 98,378 106.8,374.17 116.32,371.19 125.95,368.86"];
	normal_bam -> docm_filter	[_draw_="c 7 -#000000 B 10 57.63 403.79 60.59 393.8 65 376.34 65 361 65 361 65 361 65 224 65 208.27 141.1 196.91 210.32 189.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 210.49 192.28 217.21 189.14 210 187.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 90.5 290.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="90.5,292.5",
		pos="e,218.72,188.99 57.627,403.79 60.59,393.8 65,376.34 65,361 65,361 65,361 65,224 65,208.27 141.1,196.91 210.32,189.83"];
	filter_docm_variants -> docm_filter	[_draw_="c 7 -#000000 B 10 441.47 403.5 434.67 393.78 425 377.12 425 361 425 361 425 361 425 224 425 209 415.64 199.13 402.55 192.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 403.71 190.49 396.31 190 401.79 195 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 466 290.6 0 82 20 -filter_docm_variants ",
		label=filter_docm_variants,
		lp="466,292.5",
		pos="e,394.92,189.4 441.47,403.5 434.67,393.78 425,377.12 425,361 425,361 425,361 425,224 425,209 415.64,199.13 402.55,192.66"];
	reference -> GATK_haplotype_caller	[_draw_="c 7 -#000000 B 4 208.17 403.58 208.3 396.52 208.51 386.24 208.68 377.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 211.12 377.82 208.81 370.78 206.22 377.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 228 380.6 0 40 9 -reference ",
		label=reference,
		lp="228,382.5",
		pos="e,208.84,369.26 208.17,403.58 208.3,396.52 208.51,386.24 208.68,377.55"];
	decompose	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 206 215.5 206 234.5 310 234.5 310 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 258 222.5 0 88 16 -run vt decompose ",
		height=0.27778,
		label="run vt decompose",
		pos="258,225",
		rects="206,215.5,310,234.5",
		width=1.4444];
	decompose -> docm_filter	[_draw_="c 7 -#000000 B 7 257.84 215.74 258.18 210.06 259.56 202.73 264 198 265.45 196.45 267.04 195.04 268.73 193.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 269.77 196 274.42 190.22 267.18 191.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 303.5 200.6 0 79 17 -docm_raw_variants ",
		label=docm_raw_variants,
		lp="303.5,202.5",
		pos="e,275.7,189.42 257.84,215.74 258.18,210.06 259.56,202.73 264,198 265.45,196.45 267.04,195.04 268.73,193.76"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 207.5 305.5 207.5 324.5 272.5 324.5 272.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 240 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="240,315",
		rects="207.5,305.5,272.5,324.5",
		width=0.90278];
	GATK_haplotype_caller -> bgzip	[_draw_="c 7 -#000000 B 4 214.98 350.71 219.01 345.12 224.44 337.58 229.22 330.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 231.05 332.6 233.16 325.49 227.08 329.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 233.5 335.6 0 13 4 -file ",
		label=file,
		lp="233.5,337.5",
		pos="e,234.04,324.27 214.98,350.71 219.01,345.12 224.44,337.58 229.22,330.96"];
	bgzip2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 288.5 125.5 288.5 144.5 353.5 144.5 353.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 132.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="321,135",
		rects="288.5,125.5,353.5,144.5",
		width=0.90278];
	docm_filter -> bgzip2	[_draw_="c 7 -#000000 B 4 321 170.71 321 165.59 321 158.85 321 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 323.45 152.78 321 145.78 318.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 327.5 155.6 0 13 4 -file ",
		label=file,
		lp="327.5,157.5",
		pos="e,321,144.27 321,170.71 321,165.59 321,158.85 321,152.67"];
	index2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 290 80.5 290 99.5 352 99.5 352 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="321,90",
		rects="290,80.5,352,99.5",
		width=0.86111];
	bgzip2 -> index2	[_draw_="c 7 -#000000 B 4 321 125.71 321 120.59 321 113.85 321 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 323.45 107.78 321 100.78 318.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 327.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="327.5,112.5",
		pos="e,321,99.265 321,125.71 321,120.59 321,113.85 321,107.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 212 260.5 212 279.5 274 279.5 274 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 243 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="243,270",
		rects="212,260.5,274,279.5",
		width=0.86111];
	index -> decompose	[_draw_="c 7 -#000000 B 4 245.89 260.71 247.72 255.47 250.14 248.53 252.34 242.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 254.63 243.11 254.62 235.69 250 241.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 257.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="257.5,247.5",
		pos="e,255.12,234.27 245.89,260.71 247.72,255.47 250.14,248.53 252.34,242.24"];
	index2 -> docm_variants_vcf	[_draw_="c 7 -#000000 B 4 321 80.71 321 75.59 321 68.85 321 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 323.45 62.78 321 55.78 318.55 62.78 ",
		pos="e,321,54.265 321,80.709 321,75.593 321,68.848 321,62.666"];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 240.58 305.71 240.94 300.59 241.41 293.85 241.84 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 244.27 287.93 242.32 280.78 239.39 287.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 247.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="247.5,292.5",
		pos="e,242.42,279.27 240.58,305.71 240.94,300.59 241.41,293.85 241.84,287.67"];
}