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		label=reference_index,
		lp="849,247.5",
		pos="e,877.09,234.49 722.76,268.55 731.35,265.71 741.06,262.61 750,260 779.08,251.51 786.17,248.25 816,243 833.04,240 851.11,237.5 868.93,\
235.42"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 10 187.24 268.9 191.73 253.75 202.95 220.62 221 198 241.57 172.22 248.91 164.01 280 153 330.71 135.04 700.66 135.21 \
821.75 135.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 821.51 138.22 828.52 135.8 821.53 133.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 250 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="250,202.5",
		pos="e,830.03,135.81 187.24,268.9 191.73,253.75 202.95,220.62 221,198 241.57,172.22 248.91,164.01 280,153 330.71,135.04 700.66,135.21 \
821.75,135.77"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 849.55 268.55 863.39 260.85 885.01 249.68 905 243 912.66 240.44 920.84 238.21 929 236.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 929.36 238.72 935.66 234.8 928.29 233.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 948 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="948,247.5",
		pos="e,937.14,234.47 849.55,268.55 863.39,260.85 885.01,249.68 905,243 912.66,240.44 920.84,238.21 929,236.29"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 10 294.36 268.6 302.26 265.57 311.46 262.33 320 260 578.37 189.53 647.08 184.81 913 153 993.92 143.32 1088.45 139.06 \
1145.74 137.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1145.48 139.71 1152.4 137.05 1145.33 134.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 606.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="606.5,202.5",
		pos="e,1153.9,137 294.36,268.6 302.26,265.57 311.46,262.33 320,260 578.37,189.53 647.08,184.81 913,153 993.92,143.32 1088.5,139.06 1145.7,\
137.25"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 4 992 268.58 992 261.52 992 251.24 992 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 994.45 242.78 992 235.78 989.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1020.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1020.5,247.5",
		pos="e,992,234.26 992,268.58 992,261.52 992,251.24 992,242.55"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 1803.63 268.59 1798.89 258.68 1792 241.59 1792 226 1792 226 1792 226 1792 134 1792 117.19 1756.14 106.5 1719.85 \
99.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1720.42 97.59 1713.11 98.82 1719.6 102.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1832 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1832,180",
		pos="e,1711.6,98.568 1803.6,268.59 1798.9,258.68 1792,241.59 1792,226 1792,226 1792,226 1792,134 1792,117.19 1756.1,106.5 1719.8,99.976"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1430.5 80.5 1430.5 99.5 1573.5 99.5 1573.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1502 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="1502,90",
		rects="1430.5,80.5,1573.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1597.9 268.58 1574.45 255.36 1531.55 227.32 1512 190 1498.23 163.73 1498.44 128.16 1500.06 107.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1502.48 107.99 1500.72 100.78 1497.61 107.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1572.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="1572.5,180",
		pos="e,1500.9,99.277 1597.9,268.58 1574.4,255.36 1531.6,227.32 1512,190 1498.2,163.73 1498.4,128.16 1500.1,107.59"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 1119.07 268.57 1100.93 261.4 1073.92 251.01 1050 243 1043.77 240.91 1037.13 238.83 1030.63 236.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1031.4 234.55 1023.99 234.91 1030 239.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1110 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="1110,247.5",
		pos="e,1022.5,234.48 1119.1,268.57 1100.9,261.4 1073.9,251.01 1050,243 1043.8,240.91 1037.1,238.83 1030.6,236.88"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1247.56 268.54 1237.89 265.74 1226.99 262.65 1217 260 1186.06 251.79 1178.53 248.53 1147 243 1130.39 240.08 1112.68 \
237.58 1095.39 235.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1095.69 233.03 1088.45 234.63 1095.11 237.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1204.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1204.5,247.5",
		pos="e,1086.9,234.45 1247.6,268.54 1237.9,265.74 1227,262.65 1217,260 1186.1,251.79 1178.5,248.53 1147,243 1130.4,240.08 1112.7,237.58 \
1095.4,235.46"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1372 268.56 1359.42 265.66 1345.11 262.52 1332 260 1284.28 250.85 1272.27 248.56 1224 243 1190.39 239.13 1153.92 \
235.97 1120.08 233.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1120.66 231.06 1113.5 233 1120.31 235.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1321 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1321,247.5",
		pos="e,1112,232.89 1372,268.56 1359.4,265.66 1345.1,262.52 1332,260 1284.3,250.85 1272.3,248.56 1224,243 1190.4,239.13 1153.9,235.97 \
1120.1,233.47"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 937 170.5 937 189.5 1047 189.5 1047 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 992 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="992,180",
		rects="937,170.5,1047,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 992 215.71 992 210.59 992 203.85 992 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 994.45 197.78 992 190.78 989.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1003.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1003.5,202.5",
		pos="e,992,189.27 992,215.71 992,210.59 992,203.85 992,197.67"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 1011.75 215.56 1048.74 199.76 1128.52 165.68 1170.65 147.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1171.44 150.01 1176.92 145.01 1169.52 145.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1128 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1128,180",
		pos="e,1178.3,144.41 1011.8,215.56 1048.7,199.76 1128.5,165.68 1170.7,147.68"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1377 125.5 1377 144.5 1469 144.5 1469 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1423 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="1423,135",
		rects="1377,125.5,1469,144.5",
		width=1.2778];
	index_bam -> final_bam	[_draw_="c 7 -#000000 B 4 1423.29 125.56 1423.78 111.14 1424.79 81.48 1425.43 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1427.88 62.88 1425.67 55.8 1422.98 62.71 ",
		pos="e,1425.7,54.284 1423.3,125.56 1423.8,111.14 1424.8,81.476 1425.4,62.727"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 1466.86 125.5 1503.2 118.47 1554.9 108.45 1593.26 101.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1593.34 103.5 1599.75 99.77 1592.41 98.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1562.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1562.5,112.5",
		pos="e,1601.2,99.478 1466.9,125.5 1503.2,118.47 1554.9,108.45 1593.3,101.02"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 852.81 125.56 840.01 110.54 813.14 79.01 797.33 60.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 799.45 59.17 793.04 55.44 795.72 62.35 ",
		pos="e,792.06,54.284 852.81,125.56 840.01,110.54 813.14,79.013 797.33,60.472"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 867.29 125.56 880.26 110.54 907.49 79.01 923.5 60.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 925.14 62.33 927.86 55.43 921.43 59.13 ",
		pos="e,928.85,54.284 867.29,125.56 880.26,110.54 907.49,79.013 923.5,60.472"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1046.59 173.55 1129.48 165.28 1286.16 149.65 1368.81 141.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1368.83 143.87 1375.55 140.73 1368.34 138.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1255.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1255.5,157.5",
		pos="e,1377.1,140.58 1046.6,173.55 1129.5,165.28 1286.2,149.65 1368.8,141.41"];
	merge -> stringtie	[_draw_="c 7 -#000000 B 4 965.92 170.5 945.31 163.79 916.38 154.37 893.96 147.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 894.88 144.79 887.46 144.95 893.36 149.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 946.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="946.5,157.5",
		pos="e,886.02,144.48 965.92,170.5 945.31,163.79 916.38,154.37 893.96,147.06"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 1198 125.56 1198 111.14 1198 81.48 1198 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1200.45 62.8 1198 55.8 1195.55 62.8 ",
		pos="e,1198,54.284 1198,125.56 1198,111.14 1198,81.476 1198,62.727"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 1209.7 125.56 1231.07 110.15 1276.55 77.34 1301.93 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1303.04 61.25 1307.29 55.17 1300.18 57.28 ",
		pos="e,1308.5,54.284 1209.7,125.56 1231.1,110.15 1276.5,77.342 1301.9,59.036"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 1186.21 125.56 1164.66 110.15 1118.81 77.34 1093.22 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1094.93 57.24 1087.81 55.16 1092.08 61.23 ",
		pos="e,1086.6,54.284 1186.2,125.56 1164.7,110.15 1118.8,77.342 1093.2,59.036"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 4 1242.2 127.75 1292.53 120.63 1375.35 108.91 1433.93 100.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1433.94 103.1 1440.53 99.69 1433.26 98.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1416.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1416.5,112.5",
		pos="e,1442,99.483 1242.2,127.75 1292.5,120.63 1375.3,108.91 1433.9,100.63"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1643.46 80.71 1642.48 75.47 1641.19 68.53 1640.02 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1642.5 62.19 1638.81 55.75 1637.69 63.08 ",
		pos="e,1638.5,54.265 1643.5,80.709 1642.5,75.474 1641.2,68.534 1640,62.235"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1633.34 80.5 1625.1 74.5 1613.88 66.32 1604.43 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1605.96 57.51 1598.86 55.37 1603.07 61.47 ",
		pos="e,1597.6,54.478 1633.3,80.505 1625.1,74.497 1613.9,66.32 1604.4,59.435"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1503.93 80.71 1505.15 75.47 1506.76 68.53 1508.22 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1510.54 63.11 1509.73 55.74 1505.76 62 ",
		pos="e,1510.1,54.265 1503.9,80.709 1505.1,75.474 1506.8,68.534 1508.2,62.235"];
}