digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 421 4397 421 4397 0 ",
		bb="0,0,4397,421",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 894 8 894 63 2313 63 2313 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 948 15 0 92 16 -Workflow Outputs ",
			bb="894,8,2313,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="948,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		annotated_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2219 35.5 2219 54.5 2305 54.5 2305 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2262 42.5 0 70 13 -annotated_tsv ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=annotated_tsv,
			pos="2262,45",
			rects="2219,35.5,2305,54.5",
			width=1.1944];
		mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 902.5 35.5 902.5 54.5 1033.5 54.5 1033.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 968 42.5 0 115 21 -mhc_i_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_ranked_epitopes,
			pos="968,45",
			rects="902.5,35.5,1033.5,54.5",
			width=1.8194];
		combined_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1037.5 35.5 1037.5 54.5 1166.5 54.5 1166.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1102 42.5 0 113 21 -combined_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_all_epitopes,
			pos="1102,45",
			rects="1037.5,35.5,1166.5,54.5",
			width=1.7917];
		mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1171 35.5 1171 54.5 1307 54.5 1307 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1239 42.5 0 120 24 -mhc_ii_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_filtered_epitopes,
			pos="1239,45",
			rects="1171,35.5,1307,54.5",
			width=1.8889];
		combined_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1311 35.5 1311 54.5 1463 54.5 1463 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1387 42.5 0 136 26 -combined_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_filtered_epitopes,
			pos="1387,45",
			rects="1311,35.5,1463,54.5",
			width=2.1111];
		mhc_ii_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1467.5 35.5 1467.5 54.5 1580.5 54.5 1580.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1524 42.5 0 97 19 -mhc_ii_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_all_epitopes,
			pos="1524,45",
			rects="1467.5,35.5,1580.5,54.5",
			width=1.5694];
		mhc_i_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1585 35.5 1585 54.5 1695 54.5 1695 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1640 42.5 0 94 18 -mhc_i_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_all_epitopes,
			pos="1640,45",
			rects="1585,35.5,1695,54.5",
			width=1.5278];
		combined_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1699 35.5 1699 54.5 1849 54.5 1849 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1774 42.5 0 134 24 -combined_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_ranked_epitopes,
			pos="1774,45",
			rects="1699,35.5,1849,54.5",
			width=2.0833];
		mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1853.5 35.5 1853.5 54.5 1986.5 54.5 1986.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1920 42.5 0 117 23 -mhc_i_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_filtered_epitopes,
			pos="1920,45",
			rects="1853.5,35.5,1986.5,54.5",
			width=1.8472];
		annotated_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2129 35.5 2129 54.5 2215 54.5 2215 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2172 42.5 0 70 13 -annotated_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=annotated_vcf,
			pos="2172,45",
			rects="2129,35.5,2215,54.5",
			width=1.1944];
		mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1991 35.5 1991 54.5 2125 54.5 2125 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2058 42.5 0 118 22 -mhc_ii_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_ranked_epitopes,
			pos="2058,45",
			rects="1991,35.5,2125,54.5",
			width=1.8611];
	}
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 358 8 413 4389 413 4389 358 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 401 0 84 15 -Workflow Inputs ",
			bb="8,358,4389,413",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,403.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		peptide_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1464.5 366.5 1464.5 385.5 1605.5 385.5 1605.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1535 373.5 0 125 23 -peptide_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=peptide_sequence_length,
			pos="1535,376",
			rects="1464.5,366.5,1605.5,385.5",
			width=1.9583];
		detect_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3186.5 366.5 3186.5 385.5 3299.5 385.5 3299.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3243 373.5 0 97 19 -detect_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=detect_variants_vcf,
			pos="3243,376",
			rects="3186.5,366.5,3299.5,385.5",
			width=1.5694];
		phased_proximal_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 141 366.5 141 385.5 307 385.5 307 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 224 373.5 0 150 28 -phased_proximal_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_proximal_variants_vcf,
			pos="224,376",
			rects="141,366.5,307,385.5",
			width=2.3056];
		readcount_minimum_mapping_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3303.5 366.5 3303.5 385.5 3508.5 385.5 3508.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3406 373.5 0 189 33 -readcount_minimum_mapping_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_mapping_quality,
			pos="3406,376",
			rects="3303.5,366.5,3508.5,385.5",
			width=2.8472];
		fasta_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 601 366.5 601 385.5 667 385.5 667 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 634 373.5 0 50 10 -fasta_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fasta_size,
			pos="634,376",
			rects="601,366.5,667,385.5",
			width=0.91667];
		allele_specific_binding_thresholds	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3512.5 366.5 3512.5 385.5 3695.5 385.5 3695.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3604 373.5 0 167 34 -allele_specific_binding_thresholds ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=allele_specific_binding_thresholds,
			pos="3604,376",
			rects="3512.5,366.5,3695.5,385.5",
			width=2.5417];
		readcount_minimum_base_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2997.5 366.5 2997.5 385.5 3182.5 385.5 3182.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3090 373.5 0 169 30 -readcount_minimum_base_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_base_quality,
			pos="3090,376",
			rects="2997.5,366.5,3182.5,385.5",
			width=2.5694];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2826 366.5 2826 385.5 2912 385.5 2912 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2869 373.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="2869,376",
			rects="2826,366.5,2912,385.5",
			width=1.1944];
		gene_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2702.5 366.5 2702.5 385.5 2821.5 385.5 2821.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2762 373.5 0 103 20 -gene_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_expression_file,
			pos="2762,376",
			rects="2702.5,366.5,2821.5,385.5",
			width=1.6528];
		epitope_lengths	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 671.5 366.5 671.5 385.5 766.5 385.5 766.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 719 373.5 0 79 15 -epitope_lengths ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=epitope_lengths,
			pos="719,376",
			rects="671.5,366.5,766.5,385.5",
			width=1.3194];
		trna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1231.5 366.5 1231.5 385.5 1290.5 385.5 1290.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1261 373.5 0 43 8 -trna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_cov,
			pos="1261,376",
			rects="1231.5,366.5,1290.5,385.5",
			width=0.81944];
		variants_to_table_fields	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3943.5 366.5 3943.5 385.5 4076.5 385.5 4076.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4010 373.5 0 117 24 -variants_to_table_fields ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=variants_to_table_fields,
			pos="4010,376",
			rects="3943.5,366.5,4076.5,385.5",
			width=1.8472];
		normal_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1610 366.5 1610 385.5 1684 385.5 1684 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1647 373.5 0 58 10 -normal_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cov,
			pos="1647,376",
			rects="1610,366.5,1684,385.5",
			width=1.0278];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1688.5 366.5 1688.5 385.5 1813.5 385.5 1813.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1751 373.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="1751,376",
			rects="1688.5,366.5,1813.5,385.5",
			width=1.7361];
		netmhc_stab	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1818 366.5 1818 385.5 1898 385.5 1898 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1858 373.5 0 64 11 -netmhc_stab ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=netmhc_stab,
			pos="1858,376",
			rects="1818,366.5,1898,385.5",
			width=1.1111];
		downstream_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1902.5 366.5 1902.5 385.5 2067.5 385.5 2067.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1985 373.5 0 149 26 -downstream_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=downstream_sequence_length,
			pos="1985,376",
			rects="1902.5,366.5,2067.5,385.5",
			width=2.2917];
		tdna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 366.5 16.5 385.5 75.5 385.5 75.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 46 373.5 0 43 8 -tdna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_vaf,
			pos="46,376",
			rects="16.5,366.5,75.5,385.5",
			width=0.81944];
		binding_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2072 366.5 2072 385.5 2176 385.5 2176 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2124 373.5 0 88 17 -binding_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=binding_threshold,
			pos="2124,376",
			rects="2072,366.5,2176,385.5",
			width=1.4444];
		rnaseq_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2916.5 366.5 2916.5 385.5 2993.5 385.5 2993.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2955 373.5 0 61 10 -rnaseq_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=rnaseq_bam,
			pos="2955,376",
			rects="2916.5,366.5,2993.5,385.5",
			width=1.0694];
		trna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 79.5 366.5 79.5 385.5 136.5 385.5 136.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 108 373.5 0 41 8 -trna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_vaf,
			pos="108,376",
			rects="79.5,366.5,136.5,385.5",
			width=0.79167];
		vep_to_table_fields	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4269.5 366.5 4269.5 385.5 4380.5 385.5 4380.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4325 373.5 0 95 19 -vep_to_table_fields ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vep_to_table_fields,
			pos="4325,376",
			rects="4269.5,366.5,4380.5,385.5",
			width=1.5417];
		alleles	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311.5 366.5 311.5 385.5 360.5 385.5 360.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 336 373.5 0 33 7 -alleles ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=alleles,
			pos="336,376",
			rects="311.5,366.5,360.5,385.5",
			width=0.68056];
		net_chop_method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 365 366.5 365 385.5 469 385.5 469 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 417 373.5 0 88 15 -net_chop_method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_method,
			pos="417,376",
			rects="365,366.5,469,385.5",
			width=1.4444];
		prediction_algorithms	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 473.5 366.5 473.5 385.5 596.5 385.5 596.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 535 373.5 0 107 21 -prediction_algorithms ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=prediction_algorithms,
			pos="535,376",
			rects="473.5,366.5,596.5,385.5",
			width=1.7083];
		additional_report_columns	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2180 366.5 2180 385.5 2326 385.5 2326 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2253 373.5 0 130 25 -additional_report_columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=additional_report_columns,
			pos="2253,376",
			rects="2180,366.5,2326,385.5",
			width=2.0278];
		net_chop_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2330 366.5 2330 385.5 2442 385.5 2442 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2386 373.5 0 96 18 -net_chop_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_threshold,
			pos="2386,376",
			rects="2330,366.5,2442,385.5",
			width=1.5556];
		normal_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2446 366.5 2446 385.5 2518 385.5 2518 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2482 373.5 0 56 10 -normal_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_vaf,
			pos="2482,376",
			rects="2446,366.5,2518,385.5",
			width=1];
		exclude_nas	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2522.5 366.5 2522.5 385.5 2599.5 385.5 2599.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2561 373.5 0 61 11 -exclude_nas ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=exclude_nas,
			pos="2561,376",
			rects="2522.5,366.5,2599.5,385.5",
			width=1.0694];
		expression_tool	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2604 366.5 2604 385.5 2698 385.5 2698 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2651 373.5 0 78 15 -expression_tool ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expression_tool,
			pos="2651,376",
			rects="2604,366.5,2698,385.5",
			width=1.3056];
		maximum_transcript_support_level	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 771 366.5 771 385.5 961 385.5 961 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 866 373.5 0 174 32 -maximum_transcript_support_level ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=maximum_transcript_support_level,
			pos="866,376",
			rects="771,366.5,961,385.5",
			width=2.6389];
		minimum_fold_change	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 965 366.5 965 385.5 1093 385.5 1093 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1029 373.5 0 112 19 -minimum_fold_change ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=minimum_fold_change,
			pos="1029,376",
			rects="965,366.5,1093,385.5",
			width=1.7778];
		expn_val	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1097.5 366.5 1097.5 385.5 1158.5 385.5 1158.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1128 373.5 0 45 8 -expn_val ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expn_val,
			pos="1128,376",
			rects="1097.5,366.5,1158.5,385.5",
			width=0.84722];
		n_threads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1162.5 366.5 1162.5 385.5 1227.5 385.5 1227.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1195 373.5 0 49 9 -n_threads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=n_threads,
			pos="1195,376",
			rects="1162.5,366.5,1227.5,385.5",
			width=0.90278];
		reference_fasta	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3699.5 366.5 3699.5 385.5 3792.5 385.5 3792.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3746 373.5 0 77 15 -reference_fasta ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_fasta,
			pos="3746,376",
			rects="3699.5,366.5,3792.5,385.5",
			width=1.2917];
		top_score_metric	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1294.5 366.5 1294.5 385.5 1395.5 385.5 1395.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1345 373.5 0 85 16 -top_score_metric ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=top_score_metric,
			pos="1345,376",
			rects="1294.5,366.5,1395.5,385.5",
			width=1.4028];
		tdna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1399.5 366.5 1399.5 385.5 1460.5 385.5 1460.5 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1430 373.5 0 45 8 -tdna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_cov,
			pos="1430,376",
			rects="1399.5,366.5,1460.5,385.5",
			width=0.84722];
		transcript_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3797 366.5 3797 385.5 3939 385.5 3939 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3868 373.5 0 126 26 -transcript_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_expression_file,
			pos="3868,376",
			rects="3797,366.5,3939,385.5",
			width=1.9722];
		variants_to_table_genotype_fields	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4081 366.5 4081 385.5 4265 385.5 4265 366.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4173 373.5 0 168 33 -variants_to_table_genotype_fields ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=variants_to_table_genotype_fields,
			pos="4173,376",
			rects="4081,366.5,4265,385.5",
			width=2.5556];
	}
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1348 88.5 1348 107.5 1426 107.5 1426 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1387 95.5 0 62 11 -run pVACseq ",
		height=0.27778,
		label="run pVACseq",
		pos="1387,98",
		rects="1348,88.5,1426,107.5",
		width=1.0833];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1525.87 366.56 1516.72 357.14 1504 340.99 1504 324 1504 324 1504 324 1504 142 1504 126.34 1466.6 114.64 1434.09 \
107.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.8 105.08 1427.44 106.01 1433.77 109.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1557 231.1 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="1557,233",
		pos="e,1426,105.7 1525.9,366.56 1516.7,357.14 1504,340.99 1504,324 1504,324 1504,324 1504,142 1504,126.34 1466.6,114.64 1434.1,107.43"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3008 313.5 3008 332.5 3148 332.5 3148 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3078 320.5 0 124 22 -bam_readcount workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="3078,323",
		rects="3008,313.5,3148,332.5",
		width=1.9444];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 3211.75 366.55 3192.89 361.22 3170.85 354.51 3162 350 3156.06 346.97 3156.04 343.83 3150 341 3145 338.66 3139.64 \
336.63 3134.2 334.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3135.04 332.56 3127.64 332.9 3133.64 337.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3168.5 343.6 0 13 3 -vcf ",
		label=vcf,
		lp="3168.5,345.5",
		pos="e,3126.2,332.46 3211.8,366.55 3192.9,361.22 3170.9,354.51 3162,350 3156.1,346.97 3156,343.83 3150,341 3145,338.66 3139.6,336.63 \
3134.2,334.86"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 13 228.37 366.59 233.11 356.68 240 339.59 240 324 240 324 240 324 240 142 240 67.32 331.6 122.44 406 116 590.53 100.03 \
1169.47 98.92 1339.56 98.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.54 101.4 1346.54 98.96 1339.54 96.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 301 231.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="301,233",
		pos="e,1348.1,98.956 228.37,366.59 233.11,356.68 240,339.59 240,324 240,324 240,324 240,142 240,67.323 331.6,122.44 406,116 590.53,100.03 \
1169.5,98.924 1339.6,98.954"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 3358.63 366.54 3340.35 363.5 3319.25 360.27 3300 358 3253.52 352.51 3240.63 360.42 3195 350 3184.3 347.56 3182.56 \
343.99 3172 341 3162.78 338.39 3152.92 336.09 3143.2 334.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3143.9 331.74 3136.56 332.78 3142.95 336.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3238.5 343.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="3238.5,345.5",
		pos="e,3135.1,332.49 3358.6,366.54 3340.4,363.5 3319.2,360.27 3300,358 3253.5,352.51 3240.6,360.42 3195,350 3184.3,347.56 3182.6,343.99 \
3172,341 3162.8,338.39 3152.9,336.09 3143.2,334.09"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 645 366.52 655.58 357.32 670 341.56 670 324 670 324 670 324 670 142 670 108.33 1180.49 100.87 1339.98 99.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.71 101.81 1346.68 99.29 1339.66 96.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691 231.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="691,233",
		pos="e,1348.2,99.28 645,366.52 655.58,357.32 670,341.56 670,324 670,324 670,324 670,142 670,108.33 1180.5,100.87 1340,99.355"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3087 366.76 3085.34 361.93 3083.34 355.68 3082 350 3081.29 346.97 3080.67 343.72 3080.15 340.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3082.59 340.33 3079.15 333.76 3077.74 341.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3117.5 343.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="3117.5,345.5",
		pos="e,3078.9,332.26 3087,366.76 3085.3,361.93 3083.3,355.68 3082,350 3081.3,346.97 3080.7,343.72 3080.2,340.57"];
	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 16 2868.55 366.64 2867.37 348.25 2863.52 305.23 2853 296 2833.57 278.96 2761.13 297.23 2737 288 2730.46 285.5 2544.4 \
135.84 2538 133 2497.99 115.25 2484.57 120.14 2441 116 2241.47 97.03 1611.77 98.08 1434.09 98.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.24 96.32 1427.25 98.8 1434.26 101.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2706 231.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2706,233",
		pos="e,1425.7,98.808 2868.5,366.64 2867.4,348.25 2863.5,305.23 2853,296 2833.6,278.96 2761.1,297.23 2737,288 2730.5,285.5 2544.4,135.84 \
2538,133 2498,115.25 2484.6,120.14 2441,116 2241.5,97.025 1611.8,98.075 1434.1,98.774"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3117.5 178.5 3117.5 197.5 3260.5 197.5 3260.5 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3189 185.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="3189,188",
		rects="3117.5,178.5,3260.5,197.5",
		width=1.9861];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 2887.82 366.61 2896.26 363.26 2906.45 359.79 2916 358 2935.23 354.4 3252.61 362.07 3268 350 3277.42 342.61 3275 \
335.97 3275 324 3275 324 3275 324 3275 232 3275 216.65 3263.9 206.78 3249.68 200.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3250.82 198.24 3243.41 197.97 3249.03 202.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3304 276.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="3304,278",
		pos="e,3242,197.42 2887.8,366.61 2896.3,363.26 2906.4,359.79 2916,358 2935.2,354.4 3252.6,362.07 3268,350 3277.4,342.61 3275,335.97 3275,\
324 3275,324 3275,324 3275,232 3275,216.65 3263.9,206.78 3249.7,200.43"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2910 268.5 2910 287.5 3154 287.5 3154 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3032 275.5 0 228 46 -Add snv and indel bam-readcount files to a vcf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="3032,278",
		rects="2910,268.5,3154,287.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 2874.74 366.74 2886.58 350.38 2915.43 313.93 2949 296 2953.24 293.74 2957.75 291.77 2962.39 290.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2962.99 292.45 2968.86 287.92 2961.45 287.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2952 321.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2952,323",
		pos="e,2970.3,287.45 2874.7,366.74 2886.6,350.38 2915.4,313.93 2949,296 2953.2,293.74 2957.7,291.77 2962.4,290.07"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2745.5 223.5 2745.5 242.5 2888.5 242.5 2888.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2817 230.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="2817,233",
		rects="2745.5,223.5,2888.5,242.5",
		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2869.99 366.84 2871.45 352.14 2873.1 320.47 2864 296 2857.09 277.41 2842.65 259.75 2831.59 248.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2833.57 246.59 2826.92 243.31 2830.07 250.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2895 298.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="2895,300.5",
		pos="e,2825.9,242.23 2870,366.84 2871.4,352.14 2873.1,320.47 2864,296 2857.1,277.41 2842.6,259.75 2831.6,248.07"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2890.84 366.58 2898.71 363.68 2907.7 360.53 2916 358 2949.18 347.88 2987.09 339.74 3017.89 333.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3018.04 336.44 3024.48 332.76 3017.15 331.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2997.5 343.6 0 31 6 -sample ",
		label=sample,
		lp="2997.5,345.5",
		pos="e,3026,332.48 2890.8,366.58 2898.7,363.68 2907.7,360.53 2916,358 2949.2,347.88 2987.1,339.74 3017.9,333.97"];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2765.28 366.6 2774.2 343.72 2799.06 280 2810.76 250 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2813 251 2813.26 243.59 2808.43 249.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2822.5 298.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="2822.5,300.5",
		pos="e,2813.8,242.18 2765.3,366.6 2774.2,343.72 2799.1,280 2810.8,250"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 10 732.29 366.61 744.59 357.69 761 342.35 761 324 761 324 761 324 761 142 761 112.99 1194.39 102.49 1339.96 99.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.85 102.23 1346.8 99.65 1339.76 97.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 794.5 231.1 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="794.5,233",
		pos="e,1348.3,99.624 732.29,366.61 744.59,357.69 761,342.35 761,324 761,324 761,324 761,142 761,112.99 1194.4,102.49 1340,99.777"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1270.72 366.68 1280.46 357.36 1294 341.3 1294 324 1294 324 1294 324 1294 142 1294 119.4 1316.9 108.65 1339.97 \
103.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.21 105.99 1346.61 102.25 1339.27 101.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1311.5 231.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1311.5,233",
		pos="e,1348.1,101.96 1270.7,366.68 1280.5,357.36 1294,341.3 1294,324 1294,324 1294,324 1294,142 1294,119.4 1316.9,108.65 1340,103.54"];
	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3289.5 88.5 3289.5 107.5 3430.5 107.5 3430.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3360 95.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="3360,98",
		rects="3289.5,88.5,3430.5,107.5",
		width=1.9583];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 13 3977.71 366.56 3965.9 363.63 3952.39 360.47 3940 358 3891.91 348.43 3722 373.03 3722 324 3722 324 3722 324 3722 \
142 3722 113.69 3545.2 103.95 3438.72 100.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3438.81 98.2 3431.74 100.44 3438.66 103.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3733.5 231.1 0 23 6 -fields ",
		label=fields,
		lp="3733.5,233",
		pos="e,3430.2,100.39 3977.7,366.56 3965.9,363.63 3952.4,360.47 3940,358 3891.9,348.43 3722,373.03 3722,324 3722,324 3722,324 3722,142 \
3722,113.69 3545.2,103.95 3438.7,100.65"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1643.17 366.53 1639.03 356.57 1633 339.43 1633 324 1633 324 1633 324 1633 142 1633 122.05 1505.89 108.56 1434.41 \
102.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.67 100.12 1427.49 101.99 1434.26 105 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1656.5 231.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="1656.5,233",
		pos="e,1426,101.86 1643.2,366.53 1639,356.57 1633,339.43 1633,324 1633,324 1633,324 1633,142 1633,122.05 1505.9,108.56 1434.4,102.56"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1741.87 366.56 1732.72 357.14 1720 340.99 1720 324 1720 324 1720 324 1720 142 1720 113.52 1525.99 103.47 1434.15 \
100.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.44 97.86 1427.36 100.07 1434.28 102.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1765 231.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1765,233",
		pos="e,1425.9,100.02 1741.9,366.56 1732.7,357.14 1720,340.99 1720,324 1720,324 1720,324 1720,142 1720,113.52 1526,103.47 1434.1,100.3"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 1852.81 366.69 1847.18 356.88 1839 339.87 1839 324 1839 324 1839 324 1839 142 1839 101.67 1550.2 98.34 1434.3 \
98.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.43 96.18 1427.44 98.65 1434.45 101.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1865.5 231.1 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="1865.5,233",
		pos="e,1425.9,98.656 1852.8,366.69 1847.2,356.88 1839,339.87 1839,324 1839,324 1839,324 1839,142 1839,101.67 1550.2,98.342 1434.3,98.628"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 13 1971.71 366.61 1959.41 357.69 1943 342.35 1943 324 1943 324 1943 324 1943 142 1943 78.28 1865.33 123.1 1802 116 \
1669.08 101.1 1510.9 98.87 1433.85 98.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.27 96.32 1427.27 98.76 1434.27 101.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2006 231.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="2006,233",
		pos="e,1425.8,98.764 1971.7,366.61 1959.4,357.69 1943,342.35 1943,324 1943,324 1943,324 1943,142 1943,78.277 1865.3,123.1 1802,116 1669.1,\
101.1 1510.9,98.866 1433.9,98.767"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 57 366.52 67.58 357.32 82 341.56 82 324 82 324 82 324 82 142 82 102.92 127.4 122.11 166 116 283.2 97.44 1129.36 \
98.34 1339.74 98.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.6 101.31 1346.61 98.88 1339.61 96.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 100 231.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="100,233",
		pos="e,1348.1,98.881 56.997,366.52 67.584,357.32 82,341.56 82,324 82,324 82,324 82,142 82,102.92 127.4,122.11 166,116 283.2,97.441 1129.4,\
98.342 1339.7,98.859"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 2975.31 366.58 2995.7 358.13 3027.26 345.04 3050.01 335.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3050.73 337.96 3056.26 333.01 3048.86 333.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3043.5 343.6 0 19 3 -bam ",
		label=bam,
		lp="3043.5,345.5",
		pos="e,3057.7,332.43 2975.3,366.58 2995.7,358.13 3027.3,345.04 3050,335.61"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 126.54 366.53 141.82 358.13 161 343.67 161 324 161 324 161 324 161 142 161 104.61 204.12 122.12 241 116 350.34 \
97.85 1137.39 98.41 1339.69 98.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.52 101.32 1346.53 98.88 1339.54 96.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 178 231.1 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="178,233",
		pos="e,1348,98.887 126.54,366.53 141.82,358.13 161,343.67 161,324 161,324 161,324 161,142 161,104.61 204.12,122.12 241,116 350.34,97.847 \
1137.4,98.415 1339.7,98.868"];
	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3208.5 35.5 3208.5 54.5 3365.5 54.5 3365.5 35.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3287 42.5 0 141 28 -add VEP annotation to report ",
		height=0.27778,
		label="add VEP annotation to report",
		pos="3287,45",
		rects="3208.5,35.5,3365.5,54.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 10 4296.11 366.55 4253.04 353.73 4177 330.23 4177 324 4177 324 4177 324 4177 97 4177 57.03 3597.38 48.36 3373.65 \
46.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3373.73 44.05 3366.72 46.44 3373.69 48.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4198 208.6 0 42 10 -vep_fields ",
		label=vep_fields,
		lp="4198,210.5",
		pos="e,3365.2,46.431 4296.1,366.55 4253,353.73 4177,330.23 4177,324 4177,324 4177,324 4177,97 4177,57.033 3597.4,48.359 3373.7,46.5"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 13 349.24 366.56 368.76 353.88 403 330.69 403 324 403 324 403 324 403 142 403 91.76 463.16 122.3 513 116 594.95 105.64 \
1169.64 100.61 1339.7 99.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.71 101.78 1346.69 99.28 1339.67 96.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 417 231.1 0 28 7 -alleles ",
		label=alleles,
		lp="417,233",
		pos="e,1348.2,99.269 349.24,366.56 368.76,353.88 403,330.69 403,324 403,324 403,324 403,142 403,91.764 463.16,122.3 513,116 594.95,105.64 \
1169.6,100.61 1339.7,99.332"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 10 432.98 366.58 446.95 357.95 465 343.09 465 324 465 324 465 324 465 142 465 97.74 1151.99 97.85 1339.96 98.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.74 101.16 1346.75 98.74 1339.76 96.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 501.5 231.1 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="501.5,233",
		pos="e,1348.3,98.749 432.98,366.58 446.95,357.95 465,343.09 465,324 465,324 465,324 465,142 465,97.737 1152,97.85 1340,98.709"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 546.3 366.59 557.18 357.44 572 341.72 572 324 572 324 572 324 572 142 572 103.29 1166.05 99.34 1339.8 99.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.73 101.46 1346.73 99 1339.72 96.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 616.5 231.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="616.5,233",
		pos="e,1348.2,98.993 546.3,366.59 557.18,357.44 572,341.72 572,324 572,324 572,324 572,142 572,103.29 1166,99.335 1339.8,99.006"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 2210.26 366.56 2188.26 359.46 2166 346.67 2166 324 2166 324 2166 324 2166 142 2166 105.16 1603.22 99.88 1434.34 \
99.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.42 96.68 1427.41 99.1 1434.4 101.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2220.5 231.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="2220.5,233",
		pos="e,1425.9,99.09 2210.3,366.56 2188.3,359.46 2166,346.67 2166,324 2166,324 2166,324 2166,142 2166,105.16 1603.2,99.88 1434.3,99.125"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 2368.45 366.51 2353.7 358.01 2335 343.41 2335 324 2335 324 2335 324 2335 142 2335 96.42 1626.27 97.51 1434.41 \
98.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.43 96.19 1427.44 98.69 1434.46 101.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2375.5 231.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="2375.5,233",
		pos="e,1425.9,98.697 2368.4,366.51 2353.7,358.01 2335,343.41 2335,324 2335,324 2335,324 2335,142 2335,96.415 1626.3,97.512 1434.4,98.645"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 2474.05 366.74 2465.77 357.23 2454 340.77 2454 324 2454 324 2454 324 2454 142 2454 99.38 2306.49 119.31 2264 116 \
2100.58 103.28 1591.85 99.93 1434.12 99.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.52 96.74 1427.51 99.16 1434.49 101.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2477 231.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="2477,233",
		pos="e,1426,99.151 2474.1,366.74 2465.8,357.23 2454,340.77 2454,324 2454,324 2454,324 2454,142 2454,99.384 2306.5,119.31 2264,116 2100.6,\
103.28 1591.8,99.931 1434.1,99.188"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 13 2553.34 366.69 2545.35 357.14 2534 340.63 2534 324 2534 324 2534 324 2534 142 2534 102.02 2395.84 119.25 2356 \
116 2173.86 101.16 1603.14 99.26 1434.43 99.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.51 96.58 1427.51 99.02 1434.5 101.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2559.5 231.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="2559.5,233",
		pos="e,1426,99.02 2553.3,366.69 2545.4,357.14 2534,340.63 2534,324 2534,324 2534,324 2534,142 2534,102.02 2395.8,119.25 2356,116 2173.9,\
101.16 1603.1,99.265 1434.4,99.031"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2648.89 366.54 2642.67 339.27 2627.66 253.64 2676 223 2711.63 200.42 2974.38 192.65 3109.39 190.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3109.23 192.58 3116.18 190 3109.14 187.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2677 276.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2677,278",
		pos="e,3117.7,189.97 2648.9,366.54 2642.7,339.27 2627.7,253.64 2676,223 2711.6,200.42 2974.4,192.65 3109.4,190.13"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2656.49 366.66 2669.06 347.86 2701.47 301.27 2735 268 2743.77 259.3 2745.97 256.56 2757 251 2761.34 248.81 2765.99 \
246.87 2770.73 245.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2771.43 247.51 2777.29 242.96 2769.87 242.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2740 298.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2740,300.5",
		pos="e,2778.7,242.48 2656.5,366.66 2669.1,347.86 2701.5,301.27 2735,268 2743.8,259.3 2746,256.56 2757,251 2761.3,248.81 2766,246.87 2770.7,\
245.16"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 869.15 366.84 872.71 356.88 878 339.46 878 324 878 324 878 324 878 142 878 118.95 1213.93 104.97 1339.97 100.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.9 102.99 1346.81 100.3 1339.73 98.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 949 231.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="949,233",
		pos="e,1348.3,100.25 869.15,366.84 872.71,356.88 878,339.46 878,324 878,324 878,324 878,142 878,118.95 1213.9,104.97 1340,100.54"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 10 1030.31 366.72 1031.8 356.65 1034 339.12 1034 324 1034 324 1034 324 1034 142 1034 111.55 1243.67 102.49 1339.83 \
99.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.76 102.4 1346.7 99.77 1339.64 97.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1080 231.1 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="1080,233",
		pos="e,1348.2,99.729 1030.3,366.72 1031.8,356.65 1034,339.12 1034,324 1034,324 1034,324 1034,142 1034,111.55 1243.7,102.49 1339.8,99.943"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 10 1143.06 366.58 1156.48 357.85 1174 342.84 1174 324 1174 324 1174 324 1174 142 1174 108.33 1277.54 100.71 1340.24 \
99.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.97 101.64 1346.91 99.04 1339.86 96.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1192 231.1 0 36 8 -expn_val ",
		label=expn_val,
		lp="1192,233",
		pos="e,1348.4,99.009 1143.1,366.58 1156.5,357.85 1174,342.84 1174,324 1174,324 1174,324 1174,142 1174,108.33 1277.5,100.71 1340.2,99.18"];
	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 10 1203.84 366.5 1212.69 357.04 1225 340.85 1225 324 1225 324 1225 324 1225 142 1225 118.05 1291.99 107.12 1339.81 \
102.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.95 104.82 1346.69 101.72 1339.49 99.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1245.5 231.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="1245.5,233",
		pos="e,1348.2,101.58 1203.8,366.5 1212.7,357.04 1225,340.85 1225,324 1225,324 1225,324 1225,142 1225,118.05 1292,107.12 1339.8,102.37"];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 13 3724.89 366.64 3716.09 363.46 3705.68 360.11 3696 358 3659.33 350.02 3360 361.52 3360 324 3360 324 3360 324 3360 \
142 3360 133.31 3360 123.63 3360 115.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3362.45 115.76 3360 108.76 3357.55 115.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3380 231.1 0 40 9 -reference ",
		label=reference,
		lp="3380,233",
		pos="e,3360,107.24 3724.9,366.64 3716.1,363.46 3705.7,360.11 3696,358 3659.3,350.02 3360,361.52 3360,324 3360,324 3360,324 3360,142 3360,\
133.31 3360,123.63 3360,115.65"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 16 3725.94 366.6 3716.95 363.25 3706.11 359.78 3696 358 3651.67 350.22 3333.56 364.65 3291 350 3284.7 347.83 3285.25 \
343.33 3279 341 3255.62 332.27 3191.86 335.14 3167 333 3163.52 332.7 3159.96 332.38 3156.37 332.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3156.65 329.62 3149.45 331.41 3156.19 334.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3323.5 343.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="3323.5,345.5",
		pos="e,3147.9,331.27 3725.9,366.6 3716.9,363.25 3706.1,359.78 3696,358 3651.7,350.22 3333.6,364.65 3291,350 3284.7,347.83 3285.2,343.33 \
3279,341 3255.6,332.27 3191.9,335.14 3167,333 3163.5,332.7 3160,332.38 3156.4,332.05"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 1345.53 366.7 1346.12 356.61 1347 339.06 1347 324 1347 324 1347 324 1347 142 1347 129.86 1355.66 119.71 1364.92 \
112.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1366.19 114.42 1370.42 108.33 1363.32 110.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1382 231.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="1382,233",
		pos="e,1371.6,107.44 1345.5,366.7 1346.1,356.61 1347,339.06 1347,324 1347,324 1347,324 1347,142 1347,129.86 1355.7,119.71 1364.9,112.32"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1429.47 366.7 1428.88 356.61 1428 339.06 1428 324 1428 324 1428 324 1428 142 1428 129.72 1419.13 119.55 1409.64 \
112.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1411.11 110.24 1403.97 108.22 1408.29 114.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1446.5 231.1 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="1446.5,233",
		pos="e,1402.7,107.35 1429.5,366.7 1428.9,356.61 1428,339.06 1428,324 1428,324 1428,324 1428,142 1428,129.72 1419.1,119.55 1409.6,112.2"];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 3834.56 366.54 3821.64 363.51 3806.7 360.27 3793 358 3759.93 352.51 3751.1 355.29 3718 350 3545.67 322.49 3505.21 \
301.78 3334 268 3303.42 261.97 3217.48 265.58 3196 243 3186.66 233.17 3185.59 217.41 3186.45 205.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3188.86 205.93 3187.21 198.7 3183.99 205.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3457.5 276.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="3457.5,278",
		pos="e,3187.4,197.19 3834.6,366.54 3821.6,363.51 3806.7,360.27 3793,358 3759.9,352.51 3751.1,355.29 3718,350 3545.7,322.49 3505.2,301.78 \
3334,268 3303.4,261.97 3217.5,265.58 3196,243 3186.7,233.17 3185.6,217.41 3186.5,205.44"];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4128.56 366.54 4066.39 354.39 3961 332.54 3961 324 3961 324 3961 324 3961 142 3961 116.11 3601.36 104.54 3438.49 \
100.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3438.98 98.19 3431.93 100.48 3438.87 103.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3994 231.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="3994,233",
		pos="e,3430.4,100.44 4128.6,366.54 4066.4,354.39 3961,332.54 3961,324 3961,324 3961,324 3961,142 3961,116.11 3601.4,104.54 3438.5,100.63"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3209 133.5 3209 152.5 3271 152.5 3271 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3240 140.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="3240,143",
		rects="3209,133.5,3271,152.5",
		width=0.86111];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 3209.23 140.24 3123.93 135.43 2877.24 122.05 2672 116 2188.66 101.74 1602.7 99.44 1434.31 99.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1434.43 96.62 1427.42 99.06 1434.42 101.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2924.5 118.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="2924.5,120.5",
		pos="e,1425.9,99.053 3209.2,140.24 3123.9,135.43 2877.2,122.05 2672,116 2188.7,101.74 1602.7,99.442 1434.3,99.071"];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 4 3263.71 133.5 3282.28 126.85 3308.28 117.53 3328.59 110.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3329.15 112.66 3334.92 107.99 3327.5 108.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3316.5 118.6 0 13 3 -vcf ",
		label=vcf,
		lp="3316.5,120.5",
		pos="e,3336.3,107.48 3263.7,133.5 3282.3,126.85 3308.3,117.53 3328.6,110.26"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3244.01 133.82 3251.77 117.95 3269 82.78 3279.13 62.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3281.33 63.16 3282.2 55.8 3276.92 61.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3271.5 96.1 0 13 3 -vcf ",
		label=vcf,
		lp="3271.5,98",
		pos="e,3282.9,54.438 3244,133.82 3251.8,117.95 3269,82.776 3279.1,62.079"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1348.03 95 1283.29 91.28 1149.64 81.9 1038 63 1027.89 61.29 1017.06 58.93 1007.03 56.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1007.67 54.14 1000.29 54.84 1006.49 58.9 ",
		pos="e,998.82,54.479 1348,95.003 1283.3,91.283 1149.6,81.898 1038,63 1027.9,61.288 1017.1,58.927 1007,56.51"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 1348.19 91.91 1304.82 85.98 1232.59 75.41 1171 63 1161.55 61.1 1151.45 58.77 1141.96 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1142.67 54.11 1135.29 54.81 1141.49 58.87 ",
		pos="e,1133.8,54.442 1348.2,91.91 1304.8,85.985 1232.6,75.411 1171,63 1161.6,61.096 1151.4,58.771 1142,56.46"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1362.56 88.58 1337.6 79.98 1298.72 66.58 1271.25 57.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.32 54.89 1264.91 54.93 1270.73 59.52 ",
		pos="e,1263.5,54.434 1362.6,88.578 1337.6,79.978 1298.7,66.58 1271.3,57.114"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1387 88.58 1387 81.52 1387 71.24 1387 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1389.45 62.78 1387 55.78 1384.55 62.78 ",
		pos="e,1387,54.265 1387,88.578 1387,81.523 1387,71.24 1387,62.547"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 4 1409.62 88.58 1432.53 80.05 1468.1 66.81 1493.49 57.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1494.22 59.7 1499.93 54.96 1492.51 55.11 ",
		pos="e,1501.3,54.434 1409.6,88.578 1432.5,80.052 1468.1,66.81 1493.5,57.359"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 7 1425.89 91.44 1465.24 85.52 1527.69 75.31 1581 63 1588.87 61.18 1597.24 58.95 1605.14 56.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1605.34 59.2 1611.39 54.91 1603.98 54.5 ",
		pos="e,1612.8,54.485 1425.9,91.437 1465.2,85.517 1527.7,75.314 1581,63 1588.9,61.183 1597.2,58.952 1605.1,56.713"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1425.58 94.01 1484.09 89.2 1598.62 78.65 1695 63 1706.48 61.14 1718.8 58.7 1730.23 56.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1730.56 58.69 1736.88 54.8 1729.52 53.9 ",
		pos="e,1738.4,54.477 1425.6,94.013 1484.1,89.198 1598.6,78.648 1695,63 1706.5,61.137 1718.8,58.698 1730.2,56.252"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1425.97 96.3 1505.93 94.4 1694.14 87.48 1850 63 1860.43 61.36 1871.6 58.96 1881.88 56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1882.23 58.9 1888.43 54.83 1881.05 54.15 ",
		pos="e,1889.9,54.463 1426,96.304 1505.9,94.401 1694.1,87.477 1850,63 1860.4,61.362 1871.6,58.955 1881.9,56.465"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1425.88 97.42 1521.82 97.9 1777.22 95.72 1987 63 1997.57 61.35 2008.9 58.94 2019.32 56.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2019.78 58.86 2025.99 54.81 2018.61 54.1 ",
		pos="e,2027.5,54.449 1425.9,97.425 1521.8,97.904 1777.2,95.719 1987,63 1997.6,61.351 2008.9,58.94 2019.3,56.45"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 3166.08 178.6 3123.16 163.28 3027.47 130.98 2944 116 2626 58.95 2534.98 130.36 2219 63 2212.44 61.6 2205.55 59.5 \
2199.13 57.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2200.15 55 2192.73 54.87 2198.45 59.6 ",
		pos="e,2191.3,54.339 3166.1,178.6 3123.2,163.28 3027.5,130.98 2944,116 2626,58.947 2535,130.36 2219,63 2212.4,61.601 2205.5,59.495 2199.1,\
57.238"];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 3198.83 178.71 3205.89 172.76 3215.56 164.61 3223.75 157.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3225.27 159.63 3229.04 153.24 3222.11 155.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3225.5 163.6 0 13 3 -vcf ",
		label=vcf,
		lp="3225.5,165.5",
		pos="e,3230.2,152.27 3198.8,178.71 3205.9,172.76 3215.6,164.61 3223.8,157.7"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3347.95 88.58 3336.46 80.56 3319.01 68.36 3305.72 59.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3307.21 57.13 3300.07 55.13 3304.41 61.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3340.5 73.6 0 13 3 -tsv ",
		label=tsv,
		lp="3340.5,75.5",
		pos="e,3298.8,54.265 3347.9,88.578 3336.5,80.558 3319,68.365 3305.7,59.079"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2989.52 268.5 2954.48 261.5 2904.67 251.53 2867.58 244.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2868.22 241.75 2860.87 242.77 2867.26 246.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2949.5 253.6 0 13 3 -vcf ",
		label=vcf,
		lp="2949.5,255.5",
		pos="e,2859.4,242.48 2989.5,268.5 2954.5,261.5 2904.7,251.53 2867.6,244.12"];
	add_vep_fields_to_table -> annotated_tsv;
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2888.29 223.76 2951.51 216.45 3043.74 205.79 3109.37 198.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3109.46 200.66 3116.14 197.42 3108.9 195.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3042.5 208.6 0 13 3 -vcf ",
		label=vcf,
		lp="3042.5,210.5",
		pos="e,3117.6,197.25 2888.3,223.76 2951.5,216.45 3043.7,205.79 3109.4,198.2"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3079.91 313.5 3080.65 308.01 3080.59 300.99 3077 296 3076.13 294.79 3075.16 293.66 3074.11 292.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3075.61 290.68 3068.55 288.38 3072.64 294.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3129 298.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="3129,300.5",
		pos="e,3067.4,287.47 3079.9,313.5 3080.6,308.01 3080.6,300.99 3077,296 3076.1,294.79 3075.2,293.66 3074.1,292.62"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3008.1 314.31 2981.07 310.99 2956.04 307.34 2954 305 2949.1 299.38 2949.45 294.97 2953.1 291.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2953.95 293.86 2958.67 288.14 2951.41 289.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3006 298.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="3006,300.5",
		pos="e,2960,287.36 3008.1,314.31 2981.1,310.99 2956,307.34 2954,305 2949.1,299.38 2949.4,294.97 2953.1,291.51"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3070.66 313.66 3064.1 306.21 3055.44 296.4 3055 296 3053.63 294.75 3052.17 293.5 3050.68 292.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3052.32 290.45 3045.28 288.12 3049.33 294.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3068.5 298.6 0 13 3 -vcf ",
		label=vcf,
		lp="3068.5,300.5",
		pos="e,3044.1,287.19 3070.7,313.66 3064.1,306.21 3055.4,296.4 3055,296 3053.6,294.75 3052.2,293.5 3050.7,292.28"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3196 223.5 3196 242.5 3268 242.5 3268 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3232 230.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="3232,233",
		rects="3196,223.5,3268,242.5",
		width=1];
	default1 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3223.71 223.71 3217.88 217.88 3209.93 209.93 3203.12 203.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3205.02 201.55 3198.34 198.34 3201.55 205.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3234.5 208.6 0 41 9 -data_type ",
		label=data_type,
		lp="3234.5,210.5",
		pos="e,3197.3,197.27 3223.7,223.71 3217.9,217.88 3209.9,209.93 3203.1,203.12"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3168.5 313.5 3168.5 332.5 3215.5 332.5 3215.5 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3192 320.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="3192,323",
		rects="3168.5,313.5,3215.5,332.5",
		width=0.65278];
	default2 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3190.05 313.57 3188.23 307.66 3184.87 300.11 3179 296 3175.1 293.27 3169.24 290.97 3162.08 289.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3162.67 286.66 3155.3 287.43 3161.54 291.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3206.5 298.6 0 41 9 -data_type ",
		label=data_type,
		lp="3206.5,300.5",
		pos="e,3153.8,287.08 3190.1,313.57 3188.2,307.66 3184.9,300.11 3179,296 3175.1,293.27 3169.2,290.97 3162.1,289.04"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2737 268.5 2737 287.5 2787 287.5 2787 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2762 275.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="2762,278",
		rects="2737,268.5,2787,287.5",
		width=0.69444];
	default3 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2759.25 268.95 2757.89 263.38 2757.23 256.08 2761 251 2761.89 249.79 2762.87 248.67 2763.92 247.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2765.39 249.59 2769.42 243.36 2762.38 245.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2781.5 253.6 0 41 9 -data_type ",
		label=data_type,
		lp="2781.5,255.5",
		pos="e,2770.6,242.43 2759.2,268.95 2757.9,263.38 2757.2,256.08 2761,251 2761.9,249.79 2762.9,248.67 2763.9,247.62"];
}
