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			rects="556.5,313.5,699.5,332.5",
			width=1.9861];
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			rects="203.5,313.5,298.5,332.5",
			width=1.3194];
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			fillcolor="#94DDF4",
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			pos="59,323",
			rects="16,313.5,102,332.5",
			width=1.1944];
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	subgraph cluster_outputs {
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			lp="205,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 284.5 35.5 284.5 54.5 323.5 54.5 323.5 35.5 ",
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			pos="304,45",
			rects="284.5,35.5,323.5,54.5",
			width=0.54167];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 327.5 35.5 327.5 54.5 368.5 54.5 368.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=cram,
			pos="348,45",
			rects="327.5,35.5,368.5,54.5",
			width=0.56944];
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			fillcolor="#94DDF4",
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			label=cpg_bedgraph,
			pos="238,45",
			rects="195.5,35.5,280.5,54.5",
			width=1.1806];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 159 35.5 159 54.5 191 54.5 191 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 175 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
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			label=vcf,
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			rects="159,35.5,191,54.5",
			width=0.44444];
	}
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 506.5 260.5 506.5 279.5 749.5 279.5 749.5 260.5 ",
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		pos="628,270",
		rects="506.5,260.5,749.5,279.5",
		width=3.375];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 751.65 313.61 736.68 306.17 713.75 295.36 693 288 686.52 285.7 679.58 283.56 672.73 281.63 ",
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		lp="723.5,292.5",
		pos="e,664.77,279.46 751.65,313.61 736.68,306.17 713.75,295.36 693,288 686.52,285.7 679.58,283.56 672.73,281.63"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 859.19 313.58 851.12 310.55 841.72 307.31 833 305 792.14 294.19 745.74 286.16 707.43 280.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 708.15 278.25 700.88 279.69 707.46 283.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 823 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="823,292.5",
		pos="e,699.38,279.47 859.19,313.58 851.12,310.55 841.72,307.31 833,305 792.14,294.19 745.74,286.16 707.43,280.62"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 978.74 313.51 946.73 305.67 896.87 294.32 853 288 822.3 283.58 789.07 280.27 757.81 277.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.15 275.37 750.99 277.27 757.78 280.25 ",
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		label=adapter_min_overlap,
		lp="944,292.5",
		pos="e,749.48,277.16 978.74,313.51 946.73,305.67 896.87,294.32 853,288 822.3,283.58 789.07,280.27 757.81,277.8"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 136 80.5 136 99.5 304 99.5 304 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 220 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="220,90",
		rects="136,80.5,304,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 135.45 313.51 120.7 305.01 102 290.41 102 271 102 271 102 271 102 134 102 119.59 133.46 108.6 163.89 101.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 164.25 103.76 170.53 99.81 163.16 98.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 134.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="134.5,202.5",
		pos="e,172,99.475 135.45,313.51 120.7,305.01 102,290.41 102,271 102,271 102,271 102,134 102,119.59 133.46,108.6 163.89,101.33"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1140.24 313.52 1126.92 310.65 1111.83 307.54 1098 305 1049.34 296.08 1037.22 292.95 988 288 911.87 280.34 826.34 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.06 271.36 750.98 273.58 757.9 276.26 ",
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		label=adapter_trim_end,
		lp="1090,292.5",
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 385.17 313.58 395.13 310.65 406.52 307.48 417 305 461.08 294.56 511.11 286.34 551.38 280.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.47 283.07 558.06 279.67 550.79 278.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 515.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="515.5,292.5",
		pos="e,559.56,279.45 385.17,313.58 395.13,310.65 406.52,307.48 417,305 461.08,294.56 511.11,286.34 551.38,280.6"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 504.38 313.63 521.48 306.4 547.17 295.89 570 288 576.14 285.88 582.69 283.79 589.11 281.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 589.66 284.23 595.67 279.89 588.27 279.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 598.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="598.5,292.5",
		pos="e,597.12,279.46 504.38,313.63 521.48,306.4 547.17,295.89 570,288 576.14,285.88 582.69,283.79 589.11,281.84"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 628 313.58 628 306.52 628 296.24 628 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 630.45 287.78 628 280.78 625.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 660 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="660,292.5",
		pos="e,628,279.26 628,313.58 628,306.52 628,296.24 628,287.55"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 273.52 313.59 282.57 310.48 293.17 307.19 303 305 331.41 298.67 339.9 304.59 368 297 377.8 294.35 379.13 290.39 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 498.39 278.87 505.23 276.02 498.1 273.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 422 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="422,292.5",
		pos="e,506.75,275.93 273.52,313.59 282.57,310.48 293.17,307.19 303,305 331.41,298.67 339.9,304.59 368,297 377.8,294.35 379.13,290.39 \
389,288 410.17,282.87 454.02,279.09 498.45,276.41"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 269.5 170.5 269.5 189.5 352.5 189.5 352.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 311 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="311,180",
		rects="269.5,170.5,352.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 257.16 313.87 268.06 299.05 290.67 266.27 302 235 306.4 222.85 308.67 208.38 309.82 197.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 312.24 197.98 310.42 190.79 307.36 197.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318 245.6 0 40 9 -reference ",
		label=reference,
		lp="318,247.5",
		pos="e,310.56,189.29 257.16,313.87 268.06,299.05 290.67,266.27 302,235 306.4,222.85 308.67,208.38 309.82,197.48"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 361 170.5 361 189.5 501 189.5 501 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 431 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="431,180",
		rects="361,170.5,501,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 262.53 313.65 279.76 300.99 312.97 275.89 339 252 355.68 236.69 356.33 229.15 374 215 384.13 206.88 396.38 199.33 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 407.96 195.64 412.92 190.13 405.61 191.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 367 245.6 0 40 9 -reference ",
		label=reference,
		lp="367,247.5",
		pos="e,414.25,189.4 262.53,313.65 279.76,300.99 312.97,275.89 339,252 355.68,236.69 356.33,229.15 374,215 384.13,206.88 396.38,199.33 \
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	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 120 125.5 120 144.5 502 144.5 502 125.5 ",
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		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="311,135",
		rects="120,125.5,502,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 253.89 313.81 257.15 303.84 262 286.4 262 271 262 271 262 271 262 179 262 165.82 272.14 155.73 283.2 148.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 284.36 150.81 289.19 145.18 281.91 146.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 282 223.1 0 40 9 -reference ",
		label=reference,
		lp="282,225",
		pos="e,290.5,144.43 253.89,313.81 257.15,303.84 262,286.4 262,271 262,271 262,271 262,179 262,165.82 272.14,155.73 283.2,148.65"];
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 431 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="431,225",
		rects="376,215.5,486,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 589.08 260.5 557.11 253.53 511.72 243.62 477.77 236.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 478.68 233.9 471.32 234.8 477.64 238.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 558.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="558.5,247.5",
		pos="e,469.84,234.48 589.08,260.5 557.11,253.53 511.72,243.62 477.77,236.21"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 10 269.69 177.64 219.36 175.01 138.71 167.33 120 145 108.07 130.76 127.2 90.15 134 80 139.44 71.88 147.37 64.67 154.81 \
59.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 155.94 61.21 160.19 55.14 153.08 57.23 ",
		pos="e,161.42,54.253 269.69,177.64 219.36,175.01 138.71,167.33 120,145 108.07,130.76 127.2,90.153 134,80 139.44,71.882 147.37,64.673 \
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	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 311 170.71 311 165.59 311 158.85 311 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 313.45 152.78 311 145.78 308.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="317.5,157.5",
		pos="e,311,144.27 311,170.71 311,165.59 311,158.85 311,152.67"];
	bedgraph_to_bigwig -> cpg_bedgraph	[_draw_="c 7 -#000000 B 4 223.47 80.71 225.71 75.36 228.7 68.22 231.38 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 233.51 63.06 233.96 55.66 228.99 61.17 ",
		pos="e,234.54,54.265 223.47,80.709 225.71,75.355 228.7,68.217 231.38,61.807"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 410.5 80.5 410.5 99.5 529.5 99.5 529.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 470 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="470,90",
		rects="410.5,80.5,529.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 466.86 170.57 480.27 165.49 494.13 157.49 502 145 510.53 131.46 498.75 115.69 487.15 104.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 488.86 102.94 481.99 100.14 485.61 106.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 514.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="514.5,135",
		pos="e,480.86,99.133 466.86,170.57 480.27,165.49 494.13,157.49 502,145 510.53,131.46 498.75,115.69 487.15,104.7"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 445.9 80.5 425.91 73.46 397.46 63.43 376.38 56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 377.25 53.71 369.84 53.7 375.62 58.33 ",
		pos="e,368.41,53.193 445.9,80.505 425.91,73.461 397.46,63.433 376.38,56.002"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 4 310.33 125.56 309.18 111.14 306.82 81.48 305.33 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 307.78 62.58 304.78 55.79 302.89 62.96 ",
		pos="e,304.66,54.284 310.33,125.56 309.18,111.14 306.82,81.476 305.33,62.727"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 7 287.46 125.59 280.77 123.01 273.53 120.05 267 117 258.33 112.95 249.06 107.97 241.07 103.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.74 101.59 235.45 100.24 240.3 105.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 287 110.6 0 40 8 -bedgraph ",
		label=bedgraph,
		lp="287,112.5",
		pos="e,234.14,99.483 287.46,125.59 280.77,123.01 273.53,120.05 267,117 258.33,112.95 249.06,107.97 241.07,103.46"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 407.29 215.5 388.72 208.85 362.72 199.53 342.41 192.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 343.5 190.04 336.08 189.99 341.85 194.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 390.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="390.5,202.5",
		pos="e,334.66,189.48 407.29,215.5 388.72,208.85 362.72,199.53 342.41,192.26"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 431 215.71 431 210.59 431 203.85 431 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 433.45 197.78 431 190.78 428.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 440.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="440.5,202.5",
		pos="e,431,189.27 431,215.71 431,210.59 431,203.85 431,197.67"];
}