digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 408 368 408 0 ",
		bb="0,0,408,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 305 24 360 400 360 400 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 348 0 84 15 -Workflow Inputs ",
			bb="24,305,400,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 313.5 32.5 332.5 95.5 332.5 95.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 320.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,323",
			rects="32.5,313.5,95.5,332.5",
			width=0.875];
		reference_dict	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 264 313.5 264 332.5 350 332.5 350 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 307 320.5 0 70 14 -reference_dict ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_dict,
			pos="307,323",
			rects="264,313.5,350,332.5",
			width=1.1944];
		somatic_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 100 313.5 100 332.5 176 332.5 176 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 138 320.5 0 60 11 -somatic_vcf ",
			fillcolor="#94DDF4",
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			label=somatic_vcf,
			pos="138,323",
			rects="100,313.5,176,332.5",
			width=1.0556];
		bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 354 313.5 354 332.5 392 332.5 392 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 320.5 0 22 3 -bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=bam,
			pos="373,323",
			rects="354,313.5,392,332.5",
			width=0.52778];
		germline_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 180 313.5 180 332.5 260 332.5 260 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 220 320.5 0 64 12 -germline_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=germline_vcf,
			pos="220,323",
			rects="180,313.5,260,332.5",
			width=1.1111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 214 8 214 63 322 63 322 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 268 15 0 92 16 -Workflow Outputs ",
			bb="214,8,322,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="268,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		phased_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 232 35.5 232 54.5 304 54.5 304 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 42.5 0 56 10 -phased_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_vcf,
			pos="268,45",
			rects="232,35.5,304,54.5",
			width=1];
	}
	phase_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 207.5 125.5 207.5 144.5 328.5 144.5 328.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 132.5 0 105 19 -Read-backed phasing ",
		height=0.27778,
		label="Read-backed phasing",
		pos="268,135",
		rects="207.5,125.5,328.5,144.5",
		width=1.6806];
	reference -> phase_vcf	[_draw_="c 7 -#000000 B 10 39.44 313.66 21.39 305.79 0 292.03 0 271 0 271 0 271 0 179 0 158.81 120.09 146.38 199.49 140.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 199.21 142.85 206.01 139.89 198.85 137.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 223.1 0 40 9 -reference ",
		label=reference,
		lp="20,225",
		pos="e,207.52,139.78 39.439,313.66 21.391,305.79 0,292.03 0,271 0,271 0,271 0,179 0,158.81 120.09,146.38 199.49,140.37"];
	combine_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 7.5 260.5 7.5 279.5 298.5 279.5 298.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 267.5 0 275 52 -Combine germline and somatic vcf for pVACseq phasing ",
		height=0.27778,
		label="Combine germline and somatic vcf for pVACseq phasing",
		pos="153,270",
		rects="7.5,260.5,298.5,279.5",
		width=4.0417];
	reference -> combine_variants	[_draw_="c 7 -#000000 B 7 72.14 313.75 79.97 306.19 92.46 295.12 105 288 108.47 286.03 112.21 284.23 116.01 282.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 116.84 284.9 122.44 280.03 115.03 280.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 125 290.6 0 40 9 -reference ",
		label=reference,
		lp="125,292.5",
		pos="e,123.85,279.47 72.138,313.75 79.975,306.19 92.455,295.12 105,288 108.47,286.03 112.21,284.23 116.01,282.59"];
	sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 238.5 215.5 238.5 234.5 297.5 234.5 297.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 222.5 0 43 8 -Sort VCF ",
		height=0.27778,
		label="Sort VCF",
		pos="268,225",
		rects="238.5,215.5,297.5,234.5",
		width=0.81944];
	reference_dict -> sort	[_draw_="c 7 -#000000 B 7 307.47 313.54 307.83 301.18 307.21 277.73 299 260 295.55 252.55 289.87 245.6 284.31 239.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 286.29 238.45 279.53 235.41 282.92 242.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 334.5 268.1 0 59 14 -reference_dict ",
		label=reference_dict,
		lp="334.5,270",
		pos="e,278.43,234.37 307.47,313.54 307.83,301.18 307.21,277.73 299,260 295.55,252.55 289.87,245.6 284.31,239.95"];
	somatic_vcf -> combine_variants	[_draw_="c 7 -#000000 B 4 140.48 313.58 142.57 306.45 145.64 296.02 148.21 287.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 150.52 288.12 150.14 280.72 145.82 286.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 172.5 290.6 0 49 11 -somatic_vcf ",
		label=somatic_vcf,
		lp="172.5,292.5",
		pos="e,150.57,279.26 140.48,313.58 142.57,306.45 145.64,296.02 148.21,287.27"];
	bam -> phase_vcf	[_draw_="c 7 -#000000 B 10 373 313.7 373 303.6 373 286.05 373 271 373 271 373 271 373 179 373 159 356.49 148.1 336.56 142.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.33 139.9 329.94 140.53 336.1 144.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 382.5 223.1 0 19 3 -bam ",
		label=bam,
		lp="382.5,225",
		pos="e,328.47,140.15 373,313.7 373,303.6 373,286.05 373,271 373,271 373,271 373,179 373,159 356.49,148.1 336.56,142.23"];
	germline_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 216.46 313.64 212.84 306.01 206.54 294.89 198 288 195.86 286.27 193.52 284.7 191.07 283.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 192.19 281.11 184.83 280.15 189.99 285.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 232 290.6 0 52 12 -germline_vcf ",
		label=germline_vcf,
		lp="232,292.5",
		pos="e,183.48,279.47 216.46,313.64 212.84,306.01 206.54,294.89 198,288 195.86,286.27 193.52,284.7 191.07,283.29"];
	bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 210 80.5 210 99.5 326 99.5 326 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 87.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="268,90",
		rects="210,80.5,326,99.5",
		width=1.6111];
	phase_vcf -> bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 B 4 268 125.71 268 120.59 268 113.85 268 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.45 107.78 268 100.78 265.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 274.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="274.5,112.5",
		pos="e,268,99.265 268,125.71 268,120.59 268,113.85 268,107.67"];
	combine_variants -> sort	[_draw_="c 7 -#000000 B 4 175.72 260.5 193.36 253.91 218 244.7 237.38 237.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 238.21 239.75 243.91 235.01 236.49 235.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 226.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="226.5,247.5",
		pos="e,245.33,234.48 175.72,260.5 193.36,253.91 218,244.7 237.38,237.45"];
	bgzip_and_index_phased_vcf -> phased_vcf	[_draw_="c 7 -#000000 B 4 268 80.71 268 75.59 268 68.85 268 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.45 62.78 268 55.78 265.55 62.78 ",
		pos="e,268,54.265 268,80.709 268,75.593 268,68.848 268,62.666"];
	bgzip_and_index	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 210 170.5 210 189.5 326 189.5 326 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268 177.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bgzip and index VCF",
		pos="268,180",
		rects="210,170.5,326,189.5",
		width=1.6111];
	bgzip_and_index -> phase_vcf	[_draw_="c 7 -#000000 B 4 268 170.71 268 165.59 268 158.85 268 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.45 152.78 268 145.78 265.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 274.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="274.5,157.5",
		pos="e,268,144.27 268,170.71 268,165.59 268,158.85 268,152.67"];
	sort -> bgzip_and_index	[_draw_="c 7 -#000000 B 4 268 215.71 268 210.59 268 203.85 268 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.45 197.78 268 190.78 265.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 274.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="274.5,202.5",
		pos="e,268,189.27 268,215.71 268,210.59 268,203.85 268,197.67"];
}