digraph workflow {
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		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1216.5 268.5 1216.5 287.5 1279.5 287.5 1279.5 268.5 ",
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		same_strand	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 708 268.5 708 287.5 788 287.5 788 268.5 ",
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		minimum_sv_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 792.5 268.5 792.5 287.5 897.5 287.5 897.5 268.5 ",
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		minimum_sv_calls	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 902 268.5 902 287.5 1010 287.5 1010 268.5 ",
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		vep_ensembl_species	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1284 268.5 1284 287.5 1408 287.5 1408 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1346 275.5 0 108 19 -vep_ensembl_species ",
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		vep_ensembl_assembly	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1412 268.5 1412 287.5 1546 287.5 1546 268.5 ",
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		synonyms_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1550.5 268.5 1550.5 287.5 1637.5 287.5 1637.5 268.5 ",
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		custom_clinvar_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1641.5 268.5 1641.5 287.5 1752.5 287.5 1752.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1697 275.5 0 95 18 -custom_clinvar_vcf ",
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			rects="1641.5,268.5,1752.5,287.5",
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		custom_gnomad_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1757 268.5 1757 287.5 1875 287.5 1875 268.5 ",
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			width=1.6389];
		cohort_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 441 268.5 441 287.5 521 287.5 521 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 481 275.5 0 64 11 -cohort_name ",
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			pos="481,278",
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		estimate_sv_distance	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1014.5 268.5 1014.5 287.5 1137.5 287.5 1137.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1076 275.5 0 107 20 -estimate_sv_distance ",
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		same_type	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1141.5 268.5 1141.5 287.5 1212.5 287.5 1212.5 268.5 ",
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	}
	annotate_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1210.5 125.5 1210.5 144.5 1383.5 144.5 1383.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1297 132.5 0 157 32 -Ensembl Variant Effect Predictor ",
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		rects="1210.5,125.5,1383.5,144.5",
		width=2.4028];
	vep_cache_dir -> annotate_variants	[_draw_="c 7 -#000000 B 10 72.67 268.63 106.97 248.07 200.02 194.93 285 170 320.71 159.52 330.01 157.14 367 153 526.58 135.16 999.45 134.78 \
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		label=cache_dir,
		lp="229,202.5",
		pos="e,1210.9,135.53 72.667,268.63 106.97,248.07 200.02,194.93 285,170 320.71,159.52 330.01,157.14 367,153 526.58,135.16 999.45,134.78 \
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	add_population_frequency	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 455.5 170.5 455.5 189.5 674.5 189.5 674.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 565 177.5 0 203 42 -add population allele frequencies to a vcf ",
		height=0.27778,
		label="add population allele frequencies to a vcf",
		pos="565,180",
		rects="455.5,170.5,674.5,189.5",
		width=3.0417];
	sv_db -> add_population_frequency	[_draw_="c 7 -#000000 B 7 423.22 268.63 437.46 255.98 466 231.67 493 215 506.67 206.56 522.76 198.78 536.26 192.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 537.04 195.13 542.49 190.09 535.09 190.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 505 223.1 0 24 5 -sv_db ",
		label=sv_db,
		lp="505,225",
		pos="e,543.87,189.49 423.22,268.63 437.46,255.98 466,231.67 493,215 506.67,206.56 522.76,198.78 536.26,192.79"];
	merge_vcfs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 659 215.5 659 234.5 837 234.5 837 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 748 222.5 0 162 30 -Run SURVIVOR to merge SV calls ",
		height=0.27778,
		label="Run SURVIVOR to merge SV calls",
		pos="748,225",
		rects="659,215.5,837,234.5",
		width=2.4722];
	vcfs -> merge_vcfs	[_draw_="c 7 -#000000 B 7 553.82 268.59 557.72 265.56 562.39 262.32 567 260 592.74 247.07 622.79 239.02 650.92 234.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 651.19 236.47 657.69 232.89 650.38 231.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 617.5 245.6 0 17 4 -vcfs ",
		label=vcfs,
		lp="617.5,247.5",
		pos="e,659.18,232.64 553.82,268.59 557.72,265.56 562.39,262.32 567,260 592.74,247.07 622.79,239.02 650.92,234.03"];
	vep_ensembl_version -> annotate_variants	[_draw_="c 7 -#000000 B 10 176.14 268.81 192.38 252.91 230.57 217.7 269 198 334.73 164.3 355.85 163.28 429 153 503.75 142.5 993.02 138.02 \
1202.3 136.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1202.04 139.02 1209.02 136.53 1202 134.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304 200.6 0 70 15 -ensembl_version ",
		label=ensembl_version,
		lp="304,202.5",
		pos="e,1210.5,136.52 176.14,268.81 192.38,252.91 230.57,217.7 269,198 334.73,164.3 355.85,163.28 429,153 503.75,142.5 993.02,138.02 1202.3,\
136.57"];
	max_distance_to_merge -> merge_vcfs	[_draw_="c 7 -#000000 B 7 635.86 268.65 637.14 260.8 640.28 249.33 648 243 651.08 240.47 656.2 238.31 662.54 236.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 662.86 238.9 669.03 234.79 661.65 234.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 697.5 245.6 0 99 21 -max_distance_to_merge ",
		label=max_distance_to_merge,
		lp="697.5,247.5",
		pos="e,670.5,234.42 635.86,268.65 637.14,260.8 640.28,249.33 648,243 651.08,240.47 656.2,238.31 662.54,236.45"];
	coding_only -> annotate_variants	[_draw_="c 7 -#000000 B 10 277.85 268.55 290.99 252.82 321.23 218.76 353 198 404.54 164.33 423.06 161.73 484 153 553.27 143.08 1002.94 138.33 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1202.14 139.14 1209.12 136.63 1202.1 134.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377.5 200.6 0 49 11 -coding_only ",
		label=coding_only,
		lp="377.5,202.5",
		pos="e,1210.6,136.62 277.85,268.55 290.99,252.82 321.23,218.76 353,198 404.54,164.33 423.06,161.73 484,153 553.27,143.08 1002.9,138.33 \
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	vep_plugins -> annotate_variants	[_draw_="c 7 -#000000 B 7 354.97 268.53 367.99 247.25 405.52 191.68 454 170 520.77 140.14 996.5 136.18 1202.4 135.88 ",
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		lp="426.5,202.5",
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	reference -> annotate_variants	[_draw_="c 7 -#000000 B 7 1247.73 268.88 1247.49 254.25 1248.17 222.7 1257 198 1263.34 180.25 1275.61 162.43 1284.89 150.47 ",
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		label=reference,
		lp="1277,202.5",
		pos="e,1289.9,144.16 1247.7,268.88 1247.5,254.25 1248.2,222.7 1257,198 1263.3,180.25 1275.6,162.43 1284.9,150.47"];
	same_strand -> merge_vcfs	[_draw_="c 7 -#000000 B 4 748 268.58 748 261.52 748 251.24 748 242.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 774.5 245.6 0 53 11 -same_strand ",
		label=same_strand,
		lp="774.5,247.5",
		pos="e,748,234.26 748,268.58 748,261.52 748,251.24 748,242.55"];
	minimum_sv_size -> merge_vcfs	[_draw_="c 7 -#000000 B 7 836.45 268.67 828.22 261.05 815.12 249.95 802 243 798.04 240.9 793.77 239.01 789.44 237.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 790.45 235.08 783.03 235.01 788.79 239.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 850.5 245.6 0 71 15 -minimum_sv_size ",
		label=minimum_sv_size,
		lp="850.5,247.5",
		pos="e,781.61,234.49 836.45,268.67 828.22,261.05 815.12,249.95 802,243 798.04,240.9 793.77,239.01 789.44,237.32"];
	minimum_sv_calls -> merge_vcfs	[_draw_="c 7 -#000000 B 7 942.3 268.52 928.76 260.57 907.22 249.03 887 243 873.66 239.02 859.33 235.97 845.13 233.64 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 946.5 245.6 0 73 16 -minimum_sv_calls ",
		label=minimum_sv_calls,
		lp="946.5,247.5",
		pos="e,836.79,232.34 942.3,268.52 928.76,260.57 907.22,249.03 887,243 873.66,239.02 859.33,235.97 845.13,233.64"];
	vep_ensembl_species -> annotate_variants	[_draw_="c 7 -#000000 B 7 1338.58 268.69 1328.01 256.29 1309.03 231.74 1301 207 1295.13 188.91 1294.88 166.89 1295.6 152.21 ",
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		label=ensembl_species,
		lp="1336.5,202.5",
		pos="e,1296.1,144.12 1338.6,268.69 1328,256.29 1309,231.74 1301,207 1295.1,188.91 1294.9,166.89 1295.6,152.21"];
	vep_ensembl_assembly -> annotate_variants	[_draw_="c 7 -#000000 B 7 1466.7 268.69 1447.9 255.89 1411.04 230.36 1381 207 1356.25 187.75 1328.69 163.99 1312.11 149.42 ",
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		label=ensembl_assembly,
		lp="1420.5,202.5",
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	synonyms_file -> annotate_variants	[_draw_="c 7 -#000000 B 10 1570.79 268.58 1553.4 262.21 1531.97 254.2 1528 252 1525.83 250.8 1459.16 199.21 1457 198 1416.97 175.61 1367.22 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1497 200.6 0 58 13 -synonyms_file ",
		label=synonyms_file,
		lp="1497,202.5",
		pos="e,1325.8,144.46 1570.8,268.58 1553.4,262.21 1532,254.2 1528,252 1525.8,250.8 1459.2,199.21 1457,198 1417,175.61 1367.2,157.73 1333.9,\
147.03"];
	custom_clinvar_vcf -> annotate_variants	[_draw_="c 7 -#000000 B 16 1667.88 268.59 1646.05 262.22 1619.11 254.21 1614 252 1577.26 236.12 1569.4 229.05 1536 207 1530.44 203.33 1529.97 \
200.97 1524 198 1459.41 165.82 1437.77 171.41 1368 153 1359.55 150.77 1350.5 148.51 1341.78 146.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1342.42 144.03 1335.04 144.77 1341.27 148.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1574.5 200.6 0 77 18 -custom_clinvar_vcf ",
		label=custom_clinvar_vcf,
		lp="1574.5,202.5",
		pos="e,1333.6,144.42 1667.9,268.59 1646.1,262.22 1619.1,254.21 1614,252 1577.3,236.12 1569.4,229.05 1536,207 1530.4,203.33 1530,200.97 \
1524,198 1459.4,165.82 1437.8,171.41 1368,153 1359.5,150.77 1350.5,148.51 1341.8,146.39"];
	custom_gnomad_vcf -> annotate_variants	[_draw_="c 7 -#000000 B 10 1797.03 268.59 1761.12 252.92 1680.49 218.97 1610 198 1514.76 169.66 1488.69 171.16 1391 153 1378.56 150.69 1365.19 \
148.24 1352.54 145.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1353.17 143.58 1345.84 144.74 1352.3 148.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1678 200.6 0 84 17 -custom_gnomad_vcf ",
		label=custom_gnomad_vcf,
		lp="1678,202.5",
		pos="e,1344.4,144.47 1797,268.59 1761.1,252.92 1680.5,218.97 1610,198 1514.8,169.66 1488.7,171.16 1391,153 1378.6,150.69 1365.2,148.24 \
1352.5,145.95"];
	cohort_name -> add_population_frequency	[_draw_="c 7 -#000000 B 4 488.16 268.82 502.35 252.6 534.2 216.2 552.12 195.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 553.85 197.46 556.62 190.58 550.17 194.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 561 223.1 0 54 11 -cohort_name ",
		label=cohort_name,
		lp="561,225",
		pos="e,557.62,189.44 488.16,268.82 502.35,252.6 534.2,216.2 552.12,195.72"];
	cohort_name -> merge_vcfs	[_draw_="c 7 -#000000 B 7 489.92 268.59 499.15 260.45 514.39 248.56 530 243 552.01 235.16 603.27 230.93 650.55 228.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 650.62 231.1 657.5 228.33 650.4 226.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 557 245.6 0 54 11 -cohort_name ",
		label=cohort_name,
		lp="557,247.5",
		pos="e,659.02,228.26 489.92,268.59 499.15,260.45 514.39,248.56 530,243 552.01,235.16 603.27,230.93 650.55,228.65"];
	estimate_sv_distance -> merge_vcfs	[_draw_="c 7 -#000000 B 7 1057.78 268.52 1039.54 260.45 1010.46 248.72 984 243 939.02 233.27 888.21 228.8 845.29 226.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 845.42 224.41 838.33 226.56 845.22 229.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1059 245.6 0 88 20 -estimate_sv_distance ",
		label=estimate_sv_distance,
		lp="1059,247.5",
		pos="e,836.81,226.5 1057.8,268.52 1039.5,260.45 1010.5,248.72 984,243 939.02,233.27 888.21,228.8 845.29,226.85"];
	same_type -> merge_vcfs	[_draw_="c 7 -#000000 B 7 1163.06 268.5 1148.8 260.3 1125.72 248.36 1104 243 1056.79 231.36 933.35 227.6 845.08 226.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 845.2 223.99 838.17 226.35 845.14 228.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1151.5 245.6 0 45 9 -same_type ",
		label=same_type,
		lp="1151.5,247.5",
		pos="e,836.65,226.33 1163.1,268.5 1148.8,260.3 1125.7,248.36 1104,243 1056.8,231.36 933.35,227.6 845.08,226.44"];
	annotate_variants -> vep_summary	[_draw_="c 7 -#000000 B 4 1294.22 125.56 1289.42 111 1279.51 80.93 1273.34 62.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1275.72 61.6 1271.2 55.72 1271.07 63.14 ",
		pos="e,1270.7,54.284 1294.2,125.56 1289.4,111 1279.5,80.933 1273.3,62.216"];
	sort_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1304.5 80.5 1304.5 99.5 1363.5 99.5 1363.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1334 87.5 0 43 8 -Sort VCF ",
		height=0.27778,
		label="Sort VCF",
		pos="1334,90",
		rects="1304.5,80.5,1363.5,99.5",
		width=0.81944];
	annotate_variants -> sort_vcf	[_draw_="c 7 -#000000 B 4 1304.13 125.71 1309.05 120 1315.71 112.26 1321.49 105.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1323.19 107.32 1325.9 100.41 1319.48 104.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1324.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="1324.5,112.5",
		pos="e,1326.9,99.265 1304.1,125.71 1309,120 1315.7,112.26 1321.5,105.54"];
	add_population_frequency -> annotate_variants	[_draw_="c 7 -#000000 B 4 674.19 172.59 817.46 164.17 1066.56 149.54 1202.26 141.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1202.28 144.02 1209.12 141.16 1201.99 139.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1002.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1002.5,157.5",
		pos="e,1210.6,141.07 674.19,172.59 817.46,164.17 1066.6,149.54 1202.3,141.57"];
	merge_vcfs -> add_population_frequency	[_draw_="c 7 -#000000 B 4 711.85 215.5 682.39 208.58 640.69 198.79 609.25 191.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 609.93 189.04 602.55 189.82 608.81 193.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 678.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="678.5,202.5",
		pos="e,601.08,189.48 711.85,215.5 682.39,208.58 640.69,198.79 609.25,191.4"];
	sort_vcf -> merged_annotated_vcf	[_draw_="c 7 -#000000 B 4 1342.87 80.71 1349.23 74.76 1357.95 66.61 1365.34 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1366.61 61.87 1370.05 55.3 1363.27 58.29 ",
		pos="e,1371.2,54.265 1342.9,80.709 1349.2,74.76 1358,66.609 1365.3,59.701"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1625.5 170.5 1625.5 189.5 1666.5 189.5 1666.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1646 177.5 0 25 5 -false ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=false,
		pos="1646,180",
		rects="1625.5,170.5,1666.5,189.5",
		width=0.56944];
	default1 -> annotate_variants	[_draw_="c 7 -#000000 B 7 1640.84 170.58 1636.6 164.52 1630.01 156.76 1622 153 1601.59 143.42 1480.31 139.18 1391.86 137.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1391.97 134.89 1384.92 137.2 1391.87 139.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1655 155.6 0 44 10 -everything ",
		label=everything,
		lp="1655,157.5",
		pos="e,1383.4,137.17 1640.8,170.58 1636.6,164.52 1630,156.76 1622,153 1601.6,143.42 1480.3,139.18 1391.9,137.34"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1670.5 170.5 1670.5 189.5 1741.5 189.5 1741.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1706 177.5 0 55 10 -\"per_gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"per_gene\"",
		pos="1706,180",
		rects="1670.5,170.5,1741.5,189.5",
		width=0.98611];
	default2 -> annotate_variants	[_draw_="c 7 -#000000 B 7 1699.67 170.54 1694.57 164.45 1686.81 156.69 1678 153 1652.32 142.25 1495.92 138.29 1391.65 136.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1391.85 134.39 1384.81 136.74 1391.78 139.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1698.5 155.6 0 17 4 -pick ",
		label=pick,
		lp="1698.5,157.5",
		pos="e,1383.3,136.72 1699.7,170.54 1694.6,164.45 1686.8,156.69 1678,153 1652.3,142.25 1495.9,138.29 1391.7,136.83"];
}