digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 31 170 31 225 726 225 726 170 ",
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			bb="31,170,726,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="81,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 241.5 178.5 241.5 197.5 314.5 197.5 314.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 278 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
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			label=tumor_bam,
			pos="278,188",
			rects="241.5,178.5,314.5,197.5",
			width=1.0139];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 516 178.5 516 197.5 602 197.5 602 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 559 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
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			label=reference_cnn,
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			rects="516,178.5,602,197.5",
			width=1.1944];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 606.5 178.5 606.5 197.5 717.5 197.5 717.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 662 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			pos="662,188",
			rects="606.5,178.5,717.5,197.5",
			width=1.5417];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 39.5 178.5 39.5 197.5 132.5 197.5 132.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 86 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
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			rects="39.5,178.5,132.5,197.5",
			width=1.2917];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 318.5 178.5 318.5 197.5 375.5 197.5 375.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="347,188",
			rects="318.5,178.5,375.5,197.5",
			width=0.79167];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 137 178.5 137 197.5 237 197.5 237 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 187 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="187,188",
			rects="137,178.5,237,197.5",
			width=1.3889];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 380 178.5 380 197.5 434 197.5 434 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 407 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="407,188",
			rects="380,178.5,434,197.5",
			width=0.75];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 438 178.5 438 197.5 512 197.5 512 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 475 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="475,188",
			rects="438,178.5,512,197.5",
			width=1.0278];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 336 35.5 336 54.5 464 54.5 464 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="400,45",
			rects="336,35.5,464,54.5",
			width=1.7778];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 468.5 35.5 468.5 54.5 599.5 54.5 599.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 534 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="534,45",
			rects="468.5,35.5,599.5,54.5",
			width=1.8194];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 603.5 35.5 603.5 54.5 742.5 54.5 742.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 673 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="673,45",
			rects="603.5,35.5,742.5,54.5",
			width=1.9306];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 747 35.5 747 54.5 821 54.5 821 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 784 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="784,45",
			rects="747,35.5,821,54.5",
			width=1.0278];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 178.5 54.5 178.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="133,45",
			rects="87.5,35.5,178.5,54.5",
			width=1.2639];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 182.5 35.5 182.5 54.5 331.5 54.5 331.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 257 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="257,45",
			rects="182.5,35.5,331.5,54.5",
			width=2.0694];
	}
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 56.5 80.5 56.5 99.5 351.5 99.5 351.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 204 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="204,90",
		rects="56.5,80.5,351.5,99.5",
		width=4.0972];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 275.89 178.63 272.39 165.96 264.4 141.65 251 125 244.36 116.75 235.24 109.54 226.8 103.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 228.14 101.85 220.92 100.18 225.53 106 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 285 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="285,135",
		pos="e,219.64,99.375 275.89,178.63 272.39,165.96 264.4,141.65 251,125 244.36,116.75 235.24,109.54 226.8,103.9"];
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 361.5 125.5 361.5 144.5 438.5 144.5 438.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="400,135",
		rects="361.5,125.5,438.5,144.5",
		width=1.0694];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 284.25 178.59 290.59 170.7 301.14 159.2 313 153 325.31 146.56 339.75 142.55 353.3 140.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 353.59 142.49 360.1 138.93 352.79 137.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 336 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="336,157.5",
		pos="e,361.59,138.69 284.25,178.59 290.59,170.7 301.14,159.2 313,153 325.31,146.56 339.75,142.55 353.3,140.05"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 546.75 178.69 534.63 170.87 515.3 159.42 497 153 480.93 147.36 462.67 143.53 446.37 140.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 446.82 138.56 439.54 139.96 446.11 143.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 545.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="545.5,157.5",
		pos="e,438.04,139.73 546.75,178.69 534.63,170.87 515.3,159.42 497,153 480.93,147.36 462.67,143.53 446.37,140.97"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 645 178.63 627.98 170.65 600.82 158.98 576 153 532.9 142.62 482.41 138.54 446.59 136.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 446.88 134.52 439.79 136.68 446.68 139.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 644.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="644.5,157.5",
		pos="e,438.27,136.62 645,178.63 627.98,170.65 600.82,158.98 576,153 532.9,142.62 482.41,138.54 446.59,136.96"];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 89.9 178.71 96.37 165.71 110.49 140.44 129 125 140.57 115.36 155.31 107.89 168.66 102.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 169.27 104.84 174.91 100.02 167.5 100.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 161 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="161,135",
		pos="e,176.32,99.474 89.898,178.71 96.373,165.71 110.49,140.44 129,125 140.57,115.36 155.31,107.89 168.66,102.45"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 108.89 178.56 117.6 175.56 127.68 172.35 137 170 179.87 159.2 191.21 159.05 235 153 257.04 149.96 312.58 144.39 \
353.15 140.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 353.33 142.91 360.06 139.8 352.86 138.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 267 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="267,157.5",
		pos="e,361.57,139.65 108.89,178.56 117.6,175.56 127.68,172.35 137,170 179.87,159.2 191.21,159.05 235,153 257.04,149.96 312.58,144.39 \
353.15,140.46"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 350.35 178.56 353.66 171.08 359.34 160.25 367 153 368.56 151.53 370.27 150.15 372.06 148.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 373.33 150.97 377.99 145.2 370.75 146.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 384 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="384,157.5",
		pos="e,379.28,144.4 350.35,178.56 353.66,171.08 359.34,160.25 367,153 368.56,151.53 370.27,150.15 372.06,148.87"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 188.45 178.82 191.23 163.09 197.38 128.4 201.05 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 203.43 108.25 202.24 100.93 198.61 107.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 224.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="224.5,135",
		pos="e,202.51,99.438 188.45,178.82 191.23,163.09 197.38,128.4 201.05,107.63"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 4 405.84 178.58 404.88 171.52 403.46 161.24 402.27 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 404.72 152.37 401.34 145.76 399.86 153.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 419 155.6 0 32 6 -method ",
		label=method,
		lp="419,157.5",
		pos="e,401.13,144.26 405.84,178.58 404.88,171.52 403.46,161.24 402.27,152.55"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 466.87 178.71 459.34 171.34 447.58 160.57 436 153 433.42 151.31 430.64 149.7 427.82 148.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 429.04 146.05 421.69 145.09 426.84 150.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 471.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="471.5,157.5",
		pos="e,420.33,144.41 466.87,178.71 459.34,171.34 447.58,160.57 436,153 433.42,151.31 430.64,149.7 427.82,148.18"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 154.98 80.52 133.79 76.23 108.89 70.37 87 63 82.65 61.53 78.12 59.72 73.78 57.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.03 55.7 67.65 55.01 72.99 60.15 ",
		pos="e,66.273,54.382 154.98,80.517 133.79,76.235 108.89,70.368 87,63 82.645,61.534 78.116,59.717 73.783,57.821"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 400 125.56 400 111.14 400 81.48 400 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 402.45 62.8 400 55.8 397.55 62.8 ",
		pos="e,400,54.284 400,125.56 400,111.14 400,81.476 400,62.727"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 412.85 125.56 436.42 110.08 486.7 77.06 514.51 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 515.61 61.01 520.12 55.11 512.92 56.91 ",
		pos="e,521.39,54.284 412.85,125.56 436.42,110.08 486.7,77.061 514.51,58.802"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 426.18 125.56 475.81 109.56 583.57 74.83 638.82 57.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 639.55 59.36 645.46 54.88 638.05 54.69 ",
		pos="e,646.9,54.412 426.18,125.56 475.81,109.56 583.57,74.827 638.82,57.017"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 7 438.41 128.48 502.46 118.74 634.75 96.32 743 63 748.03 61.45 753.29 59.52 758.3 57.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.98 59.89 764.5 54.95 757.1 55.37 ",
		pos="e,765.9,54.369 438.41,128.48 502.46,118.74 634.75,96.318 743,63 748.03,61.453 753.29,59.522 758.3,57.523"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 395.67 125.68 388.73 113.3 373.86 90.39 354 80 286.33 44.59 257.64 79.18 183 63 176.04 61.49 168.71 59.34 161.87 \
57.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 162.95 54.85 155.54 54.87 161.35 59.48 ",
		pos="e,154.11,54.373 395.67,125.68 388.73,113.3 373.86,90.393 354,80 286.33,44.586 257.64,79.176 183,63 176.04,61.493 168.71,59.336 161.87,\
57.063"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 10 399.48 125.6 398.15 111.95 393.47 85.06 377 71 362.88 58.94 354.19 66.73 336 63 325.59 60.86 314.42 58.5 303.86 \
56.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.38 53.85 297.02 54.77 303.35 58.64 ",
		pos="e,295.54,54.449 399.48,125.6 398.15,111.95 393.47,85.063 377,71 362.88,58.944 354.19,66.731 336,63 325.59,60.864 314.42,58.504 303.86,\
56.239"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 361.5 129.32 340.77 126.45 314.83 122.31 292 117 278.86 113.94 275.93 111.87 263 108 256.17 105.96 248.89 103.82 \
241.85 101.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.61 99.45 235.2 99.86 241.25 104.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="307.5,112.5",
		pos="e,233.75,99.443 361.5,129.32 340.77,126.45 314.83,122.31 292,117 278.86,113.94 275.93,111.87 263,108 256.17,105.96 248.89,103.82 \
241.85,101.78"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 365.79 125.57 356.97 123.1 347.55 120.19 339 117 330.25 113.73 328.94 110.71 320 108 310.94 105.26 301.35 102.95 \
291.72 101.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 292.45 98.66 285.11 99.75 291.53 103.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 354 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="354,112.5",
		pos="e,283.63,99.47 365.79,125.57 356.97,123.1 347.55,120.19 339,117 330.25,113.73 328.94,110.71 320,108 310.94,105.26 301.35,102.95 \
291.72,101.01"];
}