digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 507 593 507 0 ",
		bb="0,0,507,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 530 8 585 405 585 405 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 573 0 84 15 -Workflow Inputs ",
			bb="8,530,405,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 96.5 538.5 96.5 557.5 177.5 557.5 177.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 137 545.5 0 65 11 -normal_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cram,
			pos="137,548",
			rects="96.5,538.5,177.5,557.5",
			width=1.125];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 181.5 538.5 181.5 557.5 250.5 557.5 250.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 216 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="216,548",
			rects="181.5,538.5,250.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 255 538.5 255 557.5 329 557.5 329 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="292,548",
			rects="255,538.5,329,557.5",
			width=1.0278];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 538.5 333.5 557.5 396.5 557.5 396.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 365 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="365,548",
			rects="333.5,538.5,396.5,557.5",
			width=0.875];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 538.5 16 557.5 92 557.5 92 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 54 545.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="54,548",
			rects="16,538.5,92,557.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 271 8 271 63 446 63 446 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 325 15 0 92 16 -Workflow Outputs ",
			bb="271,8,446,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="325,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 279.5 35.5 279.5 54.5 362.5 54.5 362.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="321,45",
			rects="279.5,35.5,362.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 366.5 35.5 366.5 54.5 437.5 54.5 437.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 402 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="402,45",
			rects="366.5,35.5,437.5,54.5",
			width=0.98611];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 125.5 440.5 125.5 459.5 258.5 459.5 258.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 192 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="192,450",
		rects="125.5,440.5,258.5,459.5",
		width=1.8472];
	normal_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 130.61 538.77 121.76 526.28 108.04 502.2 119 485 125.47 474.85 135.85 467.68 146.78 462.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 147.47 465 152.99 460.05 145.58 460.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 145.5 493.1 0 53 11 -normal_cram ",
		label=normal_cram,
		lp="145.5,495",
		pos="e,154.39,459.47 130.61,538.77 121.76,526.28 108.04,502.2 119,485 125.47,474.85 135.85,467.68 146.78,462.63"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 203.99 538.57 194.38 531.03 181.61 519.02 176 505 170.92 492.29 176.18 477.33 181.99 466.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 184 467.8 185.42 460.52 179.77 465.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 198 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="198,495",
		pos="e,186.18,459.21 203.99,538.57 194.38,531.03 181.61,519.02 176,505 170.92,492.29 176.18,477.33 181.99,466.38"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 222 485.5 222 504.5 344 504.5 344 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 283 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="283,495",
		rects="222,485.5,344,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 290.51 538.58 289.27 531.52 287.45 521.24 285.92 512.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.35 512.22 284.72 505.76 283.53 513.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="310.5,517.5",
		pos="e,284.46,504.26 290.51,538.58 289.27,531.52 287.45,521.24 285.92,512.55"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 287.5 215.5 287.5 234.5 428.5 234.5 428.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="358,225",
		rects="287.5,215.5,428.5,234.5",
		width=1.9583];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 16 311.58 538.56 319.55 534.43 328.42 528.85 335 522 340.92 515.84 341.54 513.19 344 505 362.5 443.42 358 425.3 358 \
361 358 361 358 361 358 269 358 260.31 358 250.63 358 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.45 242.76 358 235.76 355.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 381.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="381.5,382.5",
		pos="e,358,234.24 311.58,538.56 319.55,534.43 328.42,528.85 335,522 340.92,515.84 341.54,513.19 344,505 362.5,443.42 358,425.3 358,361 \
358,361 358,361 358,269 358,260.31 358,250.63 358,242.65"];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 383.89 538.62 399.46 530.28 419 515.86 419 496 419 496 419 496 419 269 419 254.7 407.67 244.74 394.77 238.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 395.82 235.82 388.44 235.09 393.76 240.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 439 380.6 0 40 9 -reference ",
		label=reference,
		lp="439,382.5",
		pos="e,387.07,234.45 383.89,538.62 399.46,530.28 419,515.86 419,496 419,496 419,496 419,269 419,254.7 407.67,244.74 394.77,238.04"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 221.5 350.5 221.5 369.5 350.5 369.5 350.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 286 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="286,360",
		rects="221.5,350.5,350.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 374.52 538.87 386.85 527.3 405.89 505.22 398 485 392.51 470.93 383.26 472.64 375 460 353.23 426.68 368.56 404.65 \
339 378 337.03 376.22 334.87 374.63 332.58 373.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 334.08 371.22 326.75 370.11 331.79 375.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 395 448.1 0 40 9 -reference ",
		label=reference,
		lp="395,450",
		pos="e,325.41,369.4 374.52,538.87 386.85,527.3 405.89,505.22 398,485 392.51,470.93 383.26,472.64 375,460 353.23,426.68 368.56,404.65 \
339,378 337.03,376.22 334.87,374.63 332.58,373.2"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 307.5 80.5 307.5 99.5 408.5 99.5 408.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="358,90",
		rects="307.5,80.5,408.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 396.44 544.35 426.41 539.9 467 527.97 467 496 467 496 467 496 467 134 467 109.31 442.5 98.37 416.73 93.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.14 91.27 409.85 92.61 416.39 96.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 487 313.1 0 40 9 -reference ",
		label=reference,
		lp="487,315",
		pos="e,408.35,92.374 396.44,544.35 426.41,539.9 467,527.97 467,496 467,496 467,496 467,134 467,109.31 442.5,98.367 416.73,93.684"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 364.74 538.6 363.88 525.44 360.33 499.96 346 485 334.6 473.1 299.89 464.88 266.29 459.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.04 457.14 259.74 458.49 266.29 461.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 493.1 0 40 9 -reference ",
		label=reference,
		lp="377,495",
		pos="e,258.25,458.26 364.74,538.6 363.88,525.44 360.33,499.96 346,485 334.6,473.1 299.89,464.88 266.29,459.5"];
	tumor_cram -> filter	[_draw_="c 7 -#000000 B 10 51.64 538.78 48.97 528.76 45 511.28 45 496 45 496 45 496 45 134 45 108.6 208.84 97.45 299.45 93.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.32 95.68 306.2 92.91 299.1 90.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 55.5 313.1 0 21 4 -cram ",
		label=cram,
		lp="55.5,315",
		pos="e,307.71,92.843 51.635,538.78 48.969,528.76 45,511.28 45,496 45,496 45,496 45,134 45,108.6 208.84,97.446 299.45,93.219"];
	tumor_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 52.92 538.59 51.73 525.42 51.51 499.92 65 485 78.59 469.97 98.02 461.28 117.62 456.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 117.95 458.77 124.23 454.83 116.87 453.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 89.5 493.1 0 49 10 -tumor_cram ",
		label=tumor_cram,
		lp="89.5,495",
		pos="e,125.71,454.49 52.919,538.59 51.729,525.42 51.509,499.92 65,485 78.589,469.97 98.025,461.28 117.62,456.33"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 4 265.02 485.5 251.44 479.09 232.61 470.19 217.47 463.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 218.69 460.9 211.31 460.12 216.59 465.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 272 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="272,472.5",
		pos="e,209.94,459.48 265.02,485.5 251.44,479.09 232.61,470.19 217.47,463.04"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 293.5 170.5 293.5 189.5 422.5 189.5 422.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="358,180",
		rects="293.5,170.5,422.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 327 125.5 327 144.5 389 144.5 389 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="358,135",
		rects="327,125.5,389,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 358 170.71 358 165.59 358 158.85 358 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.45 152.78 358 145.78 355.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 364.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="364.5,157.5",
		pos="e,358,144.27 358,170.71 358,165.59 358,158.85 358,152.67"];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 358 215.71 358 210.59 358 203.85 358 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.45 197.78 358 190.78 355.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 364.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="364.5,202.5",
		pos="e,358,189.27 358,215.71 358,210.59 358,203.85 358,197.67"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 358 125.71 358 120.59 358 113.85 358 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.45 107.78 358 100.78 355.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 364.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="364.5,112.5",
		pos="e,358,99.265 358,125.71 358,120.59 358,113.85 358,107.67"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 205.5 395.5 205.5 414.5 254.5 414.5 254.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 230 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="230,405",
		rects="205.5,395.5,254.5,414.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 232.73 395.77 234.97 390.12 238.66 382.79 244 378 245.81 376.38 247.8 374.9 249.89 373.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.04 375.71 256 370.2 248.68 371.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 293 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="293,382.5",
		pos="e,257.32,369.47 232.73,395.77 234.97,390.12 238.66,382.79 244,378 245.81,376.38 247.8,374.9 249.89,373.55"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 265.5 305.5 265.5 324.5 330.5 324.5 330.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 298 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="298,315",
		rects="265.5,305.5,330.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 288.31 350.71 289.77 345.47 291.71 338.53 293.47 332.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 295.76 333.12 295.29 325.72 291.05 331.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 299.5 335.6 0 13 4 -file ",
		label=file,
		lp="299.5,337.5",
		pos="e,295.69,324.27 288.31,350.71 289.77,345.47 291.71,338.53 293.47,332.24"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 350.87 80.71 345.95 75 339.29 67.26 333.51 60.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 335.52 59.12 329.1 55.41 331.81 62.32 ",
		pos="e,328.11,54.265 350.87,80.709 345.95,74.998 339.29,67.258 333.51,60.535"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 366.48 80.71 372.45 74.88 380.58 66.93 387.56 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.17 61.97 392.46 55.32 385.74 58.46 ",
		pos="e,393.54,54.265 366.48,80.709 372.45,74.879 380.58,66.934 387.56,60.117"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 272 260.5 272 279.5 334 279.5 334 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 303 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="303,270",
		rects="272,260.5,334,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 298.96 305.71 299.56 300.59 300.34 293.85 301.06 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.49 288 301.86 280.77 298.62 287.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="306.5,292.5",
		pos="e,302.04,279.27 298.96,305.71 299.56,300.59 300.34,293.85 301.06,287.67"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 199.33 440.71 204.37 435 211.21 427.26 217.15 420.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 218.89 422.27 221.69 415.4 215.22 419.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 266.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="266.5,427.5",
		pos="e,222.7,414.27 199.33,440.71 204.37,435 211.21,427.26 217.15,420.54"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 313.87 260.5 321.47 254.56 331.8 246.48 340.56 239.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 341.96 241.65 345.96 235.41 338.94 237.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 341.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="341.5,247.5",
		pos="e,347.16,234.48 313.87,260.5 321.47,254.56 331.8,246.48 340.56,239.64"];
}