digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 3886 368 3886 0 ",
		bb="0,0,3886,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 653 8 653 63 1892 63 1892 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 707 15 0 92 16 -Workflow Outputs ",
			bb="653,8,1892,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="707,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 661.5 35.5 661.5 54.5 794.5 54.5 794.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 728 42.5 0 117 23 -mhc_i_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_filtered_epitopes,
			pos="728,45",
			rects="661.5,35.5,794.5,54.5",
			width=1.8472];
		combined_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 799 35.5 799 54.5 949 54.5 949 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 874 42.5 0 134 24 -combined_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_ranked_epitopes,
			pos="874,45",
			rects="799,35.5,949,54.5",
			width=2.0833];
		combined_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 953.5 35.5 953.5 54.5 1082.5 54.5 1082.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1018 42.5 0 113 21 -combined_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_all_epitopes,
			pos="1018,45",
			rects="953.5,35.5,1082.5,54.5",
			width=1.7917];
		mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1087 35.5 1087 54.5 1223 54.5 1223 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1155 42.5 0 120 24 -mhc_ii_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_filtered_epitopes,
			pos="1155,45",
			rects="1087,35.5,1223,54.5",
			width=1.8889];
		mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1227.5 35.5 1227.5 54.5 1358.5 54.5 1358.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1293 42.5 0 115 21 -mhc_i_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_ranked_epitopes,
			pos="1293,45",
			rects="1227.5,35.5,1358.5,54.5",
			width=1.8194];
		mhc_ii_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1362.5 35.5 1362.5 54.5 1475.5 54.5 1475.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1419 42.5 0 97 19 -mhc_ii_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_all_epitopes,
			pos="1419,45",
			rects="1362.5,35.5,1475.5,54.5",
			width=1.5694];
		mhc_i_all_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1480 35.5 1480 54.5 1590 54.5 1590 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1535 42.5 0 94 18 -mhc_i_all_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_i_all_epitopes,
			pos="1535,45",
			rects="1480,35.5,1590,54.5",
			width=1.5278];
		mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1594 35.5 1594 54.5 1728 54.5 1728 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1661 42.5 0 118 22 -mhc_ii_ranked_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=mhc_ii_ranked_epitopes,
			pos="1661,45",
			rects="1594,35.5,1728,54.5",
			width=1.8611];
		combined_filtered_epitopes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1732 35.5 1732 54.5 1884 54.5 1884 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1808 42.5 0 136 26 -combined_filtered_epitopes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=combined_filtered_epitopes,
			pos="1808,45",
			rects="1732,35.5,1884,54.5",
			width=2.1111];
	}
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 3878 360 3878 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,3878,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		allele_specific_binding_thresholds	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3686.5 313.5 3686.5 332.5 3869.5 332.5 3869.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3778 320.5 0 167 34 -allele_specific_binding_thresholds ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=allele_specific_binding_thresholds,
			pos="3778,323",
			rects="3686.5,313.5,3869.5,332.5",
			width=2.5417];
		downstream_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 313.5 16.5 332.5 181.5 332.5 181.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 99 320.5 0 149 26 -downstream_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=downstream_sequence_length,
			pos="99,323",
			rects="16.5,313.5,181.5,332.5",
			width=2.2917];
		normal_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 186 313.5 186 332.5 260 332.5 260 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 223 320.5 0 58 10 -normal_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cov,
			pos="223,323",
			rects="186,313.5,260,332.5",
			width=1.0278];
		trna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 264.5 313.5 264.5 332.5 321.5 332.5 321.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 293 320.5 0 41 8 -trna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_vaf,
			pos="293,323",
			rects="264.5,313.5,321.5,332.5",
			width=0.79167];
		peptide_sequence_length	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 325.5 313.5 325.5 332.5 466.5 332.5 466.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 396 320.5 0 125 23 -peptide_sequence_length ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=peptide_sequence_length,
			pos="396,323",
			rects="325.5,313.5,466.5,332.5",
			width=1.9583];
		maximum_transcript_support_level	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 471 313.5 471 332.5 661 332.5 661 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 566 320.5 0 174 32 -maximum_transcript_support_level ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=maximum_transcript_support_level,
			pos="566,323",
			rects="471,313.5,661,332.5",
			width=2.6389];
		top_score_metric	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 665.5 313.5 665.5 332.5 766.5 332.5 766.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 716 320.5 0 85 16 -top_score_metric ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=top_score_metric,
			pos="716,323",
			rects="665.5,313.5,766.5,332.5",
			width=1.4028];
		rnaseq_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1852.5 313.5 1852.5 332.5 1929.5 332.5 1929.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1891 320.5 0 61 10 -rnaseq_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=rnaseq_bam,
			pos="1891,323",
			rects="1852.5,313.5,1929.5,332.5",
			width=1.0694];
		binding_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2858 313.5 2858 332.5 2962 332.5 2962 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2910 320.5 0 88 17 -binding_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=binding_threshold,
			pos="2910,323",
			rects="2858,313.5,2962,332.5",
			width=1.4444];
		prediction_algorithms	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 770.5 313.5 770.5 332.5 893.5 332.5 893.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 832 320.5 0 107 21 -prediction_algorithms ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=prediction_algorithms,
			pos="832,323",
			rects="770.5,313.5,893.5,332.5",
			width=1.7083];
		transcript_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1706 313.5 1706 332.5 1848 332.5 1848 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1777 320.5 0 126 26 -transcript_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=transcript_expression_file,
			pos="1777,323",
			rects="1706,313.5,1848,332.5",
			width=1.9722];
		gene_expression_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2636.5 313.5 2636.5 332.5 2755.5 332.5 2755.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2696 320.5 0 103 20 -gene_expression_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gene_expression_file,
			pos="2696,323",
			rects="2636.5,313.5,2755.5,332.5",
			width=1.6528];
		tdna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 897.5 313.5 897.5 332.5 958.5 332.5 958.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 928 320.5 0 45 8 -tdna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_cov,
			pos="928,323",
			rects="897.5,313.5,958.5,332.5",
			width=0.84722];
		expn_val	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 962.5 313.5 962.5 332.5 1023.5 332.5 1023.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 993 320.5 0 45 8 -expn_val ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expn_val,
			pos="993,323",
			rects="962.5,313.5,1023.5,332.5",
			width=0.84722];
		trna_cov	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1027.5 313.5 1027.5 332.5 1086.5 332.5 1086.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1057 320.5 0 43 8 -trna_cov ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trna_cov,
			pos="1057,323",
			rects="1027.5,313.5,1086.5,332.5",
			width=0.81944];
		netmhc_stab	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1091 313.5 1091 332.5 1171 332.5 1171 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1131 320.5 0 64 11 -netmhc_stab ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=netmhc_stab,
			pos="1131,323",
			rects="1091,313.5,1171,332.5",
			width=1.1111];
		fasta_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1175 313.5 1175 332.5 1241 332.5 1241 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1208 320.5 0 50 10 -fasta_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fasta_size,
			pos="1208,323",
			rects="1175,313.5,1241,332.5",
			width=0.91667];
		reference_fasta	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2050.5 313.5 2050.5 332.5 2143.5 332.5 2143.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2097 320.5 0 77 15 -reference_fasta ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_fasta,
			pos="2097,323",
			rects="2050.5,313.5,2143.5,332.5",
			width=1.2917];
		epitope_lengths	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1245.5 313.5 1245.5 332.5 1340.5 332.5 1340.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1293 320.5 0 79 15 -epitope_lengths ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=epitope_lengths,
			pos="1293,323",
			rects="1245.5,313.5,1340.5,332.5",
			width=1.3194];
		readcount_minimum_mapping_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2147.5 313.5 2147.5 332.5 2352.5 332.5 2352.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2250 320.5 0 189 33 -readcount_minimum_mapping_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_mapping_quality,
			pos="2250,323",
			rects="2147.5,313.5,2352.5,332.5",
			width=2.8472];
		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1344.5 313.5 1344.5 332.5 1469.5 332.5 1469.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1407 320.5 0 109 18 -normal_sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_sample_name,
			pos="1407,323",
			rects="1344.5,313.5,1469.5,332.5",
			width=1.7361];
		additional_report_columns	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1474 313.5 1474 332.5 1620 332.5 1620 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1547 320.5 0 130 25 -additional_report_columns ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=additional_report_columns,
			pos="1547,323",
			rects="1474,313.5,1620,332.5",
			width=2.0278];
		exclude_nas	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1624.5 313.5 1624.5 332.5 1701.5 332.5 1701.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1663 320.5 0 61 11 -exclude_nas ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=exclude_nas,
			pos="1663,323",
			rects="1624.5,313.5,1701.5,332.5",
			width=1.0694];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2546 313.5 2546 332.5 2632 332.5 2632 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2589 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="2589,323",
			rects="2546,313.5,2632,332.5",
			width=1.1944];
		alleles	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2966.5 313.5 2966.5 332.5 3015.5 332.5 3015.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2991 320.5 0 33 7 -alleles ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=alleles,
			pos="2991,323",
			rects="2966.5,313.5,3015.5,332.5",
			width=0.68056];
		net_chop_method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3020 313.5 3020 332.5 3124 332.5 3124 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3072 320.5 0 88 15 -net_chop_method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_method,
			pos="3072,323",
			rects="3020,313.5,3124,332.5",
			width=1.4444];
		expression_tool	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2760 313.5 2760 332.5 2854 332.5 2854 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2807 320.5 0 78 15 -expression_tool ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=expression_tool,
			pos="2807,323",
			rects="2760,313.5,2854,332.5",
			width=1.3056];
		tdna_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3128.5 313.5 3128.5 332.5 3187.5 332.5 3187.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3158 320.5 0 43 8 -tdna_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tdna_vaf,
			pos="3158,323",
			rects="3128.5,313.5,3187.5,332.5",
			width=0.81944];
		phased_proximal_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3192 313.5 3192 332.5 3358 332.5 3358 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3275 320.5 0 150 28 -phased_proximal_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_proximal_variants_vcf,
			pos="3275,323",
			rects="3192,313.5,3358,332.5",
			width=2.3056];
		minimum_fold_change	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3362 313.5 3362 332.5 3490 332.5 3490 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3426 320.5 0 112 19 -minimum_fold_change ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=minimum_fold_change,
			pos="3426,323",
			rects="3362,313.5,3490,332.5",
			width=1.7778];
		normal_vaf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3494 313.5 3494 332.5 3566 332.5 3566 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3530 320.5 0 56 10 -normal_vaf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_vaf,
			pos="3530,323",
			rects="3494,313.5,3566,332.5",
			width=1];
		detect_variants_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1933.5 313.5 1933.5 332.5 2046.5 332.5 2046.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1990 320.5 0 97 19 -detect_variants_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=detect_variants_vcf,
			pos="1990,323",
			rects="1933.5,313.5,2046.5,332.5",
			width=1.5694];
		net_chop_threshold	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 3570 313.5 3570 332.5 3682 332.5 3682 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3626 320.5 0 96 18 -net_chop_threshold ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=net_chop_threshold,
			pos="3626,323",
			rects="3570,313.5,3682,332.5",
			width=1.5556];
		readcount_minimum_base_quality	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2356.5 313.5 2356.5 332.5 2541.5 332.5 2541.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2449 320.5 0 169 30 -readcount_minimum_base_quality ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=readcount_minimum_base_quality,
			pos="2449,323",
			rects="2356.5,313.5,2541.5,332.5",
			width=2.5694];
	}
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1254 80.5 1254 99.5 1332 99.5 1332 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1293 87.5 0 62 11 -run pVACseq ",
		height=0.27778,
		label="run pVACseq",
		pos="1293,90",
		rects="1254,80.5,1332,99.5",
		width=1.0833];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 99.26 313.7 99.56 303.6 100 286.05 100 271 100 271 100 271 100 134 100 104.81 1024.55 93.69 1245.83 91.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.83 93.9 1252.81 91.38 1245.78 89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 163 200.6 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="163,202.5",
		pos="e,1254.3,91.361 99.263,313.7 99.559,303.6 100,286.05 100,271 100,271 100,271 100,134 100,104.81 1024.5,93.689 1245.8,91.446"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 242.48 313.55 249.25 310.71 256.91 307.61 264 305 310.03 288.04 369 320.05 369 271 369 271 369 271 369 134 369 \
89.64 1057.48 89.82 1245.85 90.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.66 93.15 1252.67 90.74 1245.68 88.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 392.5 200.6 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="392.5,202.5",
		pos="e,1254.2,90.744 242.48,313.55 249.25,310.71 256.91,307.61 264,305 310.03,288.04 369,320.05 369,271 369,271 369,271 369,134 369,89.641 \
1057.5,89.823 1245.9,90.704"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 307.04 313.56 312.75 310.45 319.52 307.16 326 305 361.72 293.08 492 308.65 492 271 492 271 492 271 492 134 492 \
96.02 1073.87 91.54 1245.75 91.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.59 93.5 1252.58 91.03 1245.58 88.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 509 200.6 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="509,202.5",
		pos="e,1254.1,91.03 307.04,313.56 312.75,310.45 319.52,307.16 326,305 361.72,293.08 492,308.65 492,271 492,271 492,271 492,134 492,96.018 \
1073.9,91.544 1245.7,91.051"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 13 433.28 313.59 452.19 309.1 475.44 303.21 496 297 528.97 287.03 569 305.44 569 271 569 271 569 271 569 134 569 \
99.98 1085.06 92.75 1245.79 91.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.58 93.78 1252.56 91.27 1245.54 88.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 622 200.6 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="622,202.5",
		pos="e,1254.1,91.258 433.28,313.59 452.19,309.1 475.44,303.21 496,297 528.97,287.03 569,305.44 569,271 569,271 569,271 569,134 569,99.982 \
1085.1,92.755 1245.8,91.329"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 612.46 313.52 651.51 305.02 701 290.42 701 271 701 271 701 271 701 134 701 106.75 1105.34 95.17 1245.69 91.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.7 94.42 1252.64 91.82 1245.59 89.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 772 200.6 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="772,202.5",
		pos="e,1254.2,91.784 612.46,313.52 651.51,305.02 701,290.42 701,271 701,271 701,271 701,134 701,106.75 1105.3,95.171 1245.7,91.973"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 741.74 313.56 783.16 299.88 860 274.1 860 271 860 271 860 271 860 134 860 95.58 1133.48 91.07 1245.75 90.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.68 93.28 1252.68 90.83 1245.68 88.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 895 200.6 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="895,202.5",
		pos="e,1254.2,90.825 741.74,313.56 783.16,299.88 860,274.1 860,271 860,271 860,271 860,134 860,95.577 1133.5,91.067 1245.8,90.835"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2116 260.5 2116 279.5 2256 279.5 2256 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2186 267.5 0 124 22 -bam_readcount workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="2186,270",
		rects="2116,260.5,2256,279.5",
		width=1.9444];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1909.53 313.61 1917 310.51 1925.78 307.21 1934 305 1991.14 289.62 2057.53 281.03 2107.82 276.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2107.8 278.79 2114.55 275.71 2107.36 273.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2018.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="2018.5,292.5",
		pos="e,2116.1,275.58 1909.5,313.61 1917,310.51 1925.8,307.21 1934,305 1991.1,289.62 2057.5,281.03 2107.8,276.33"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 865.3 313.54 898 304.23 943 288.28 943 271 943 271 943 271 943 134 943 103.84 1150.37 94.63 1245.87 91.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.76 94.45 1252.69 91.81 1245.63 89.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 987.5 200.6 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="987.5,202.5",
		pos="e,1254.2,91.771 865.3,313.54 898,304.23 943,288.28 943,271 943,271 943,271 943,134 943,103.84 1150.4,94.634 1245.9,91.993"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2661.5 125.5 2661.5 144.5 2804.5 144.5 2804.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2733 132.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="2733,135",
		rects="2661.5,125.5,2804.5,144.5",
		width=1.9861];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1811.82 313.52 1845.35 304.32 1891 288.56 1891 271 1891 271 1891 271 1891 179 1891 141.06 2443.41 136.37 2653.35 \
135.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2653.07 138.41 2660.06 135.95 2653.06 133.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1921.5 223.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="1921.5,225",
		pos="e,2661.6,135.94 1811.8,313.52 1845.3,304.32 1891,288.56 1891,271 1891,271 1891,271 1891,179 1891,141.06 2443.4,136.37 2653.3,135.96"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2563.5 170.5 2563.5 189.5 2706.5 189.5 2706.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2635 177.5 0 127 26 -add expression info to vcf ",
		height=0.27778,
		label="add expression info to vcf",
		pos="2635,180",
		rects="2563.5,170.5,2706.5,189.5",
		width=1.9861];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2690.22 313.75 2681.52 301.02 2665.03 275.59 2655 252 2647.28 233.85 2641.61 211.84 2638.32 197.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2640.76 196.91 2636.9 190.59 2635.97 197.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2685.5 245.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="2685.5,247.5",
		pos="e,2636.6,189.11 2690.2,313.75 2681.5,301.02 2665,275.59 2655,252 2647.3,233.85 2641.6,211.84 2638.3,197.18"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 16 945.01 313.53 950.7 310.75 957.1 307.69 963 305 998.16 289 1043 309.63 1043 271 1043 271 1043 271 1043 134 1043 \
105.34 1074.25 115.14 1102 108 1150.16 95.6 1207.15 91.89 1246.26 90.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.87 93.4 1252.82 90.81 1245.77 88.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1061.5 200.6 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="1061.5,202.5",
		pos="e,1254.3,90.778 945.01,313.53 950.7,310.75 957.1,307.69 963,305 998.16,289 1043,309.63 1043,271 1043,271 1043,271 1043,134 1043,\
105.34 1074.2,115.14 1102,108 1150.2,95.604 1207.1,91.886 1246.3,90.94"];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 1010 313.51 1015.69 310.74 1022.09 307.68 1028 305 1056.63 292.03 1090 302.43 1090 271 1090 271 1090 271 1090 \
134 1090 102.26 1186.18 93.84 1246.13 91.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.91 94.14 1252.83 91.46 1245.75 89.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1108 200.6 0 36 8 -expn_val ",
		label=expn_val,
		lp="1108,202.5",
		pos="e,1254.3,91.412 1010,313.51 1015.7,310.74 1022.1,307.68 1028,305 1056.6,292.03 1090,302.43 1090,271 1090,271 1090,271 1090,134 1090,\
102.26 1186.2,93.842 1246.1,91.678"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1072.99 313.54 1096.07 301.07 1136 278.43 1136 271 1136 271 1136 271 1136 134 1136 110.99 1199.54 99.85 1245.78 \
94.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.98 97.24 1252.69 94.08 1245.47 92.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1153.5 200.6 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1153.5,202.5",
		pos="e,1254.2,93.92 1073,313.54 1096.1,301.07 1136,278.43 1136,271 1136,271 1136,271 1136,134 1136,110.99 1199.5,99.851 1245.8,94.795"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 1147.59 313.5 1161.8 304.9 1180 290.15 1180 271 1180 271 1180 271 1180 134 1180 104.13 1214.91 94.18 1245.92 91.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1245.81 93.7 1252.6 90.72 1245.44 88.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1206.5 200.6 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="1206.5,202.5",
		pos="e,1254.1,90.605 1147.6,313.5 1161.8,304.9 1180,290.15 1180,271 1180,271 1180,271 1180,134 1180,104.13 1214.9,94.184 1245.9,91.237"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 1218.02 313.74 1228.05 304.47 1242 288.45 1242 271 1242 271 1242 271 1242 134 1242 120.57 1252.46 110.49 1263.91 \
103.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1264.82 105.77 1269.75 100.23 1262.44 101.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1263 200.6 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="1263,202.5",
		pos="e,1271.1,99.498 1218,313.74 1228,304.47 1242,288.45 1242,271 1242,271 1242,271 1242,134 1242,120.57 1252.5,110.49 1263.9,103.47"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2100.49 313.72 2104.19 305.92 2110.8 294.49 2120 288 2122.83 286.01 2125.87 284.25 2129.05 282.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2129.79 285.04 2135.25 280.02 2127.85 280.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2152.5 290.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="2152.5,292.5",
		pos="e,2136.6,279.43 2100.5,313.72 2104.2,305.92 2110.8,294.49 2120,288 2122.8,286.01 2125.9,284.25 2129,282.69"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 10 1293 313.7 1293 303.6 1293 286.05 1293 271 1293 271 1293 271 1293 134 1293 125.31 1293 115.63 1293 107.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1295.45 107.76 1293 100.76 1290.55 107.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1326.5 200.6 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="1326.5,202.5",
		pos="e,1293,99.243 1293,313.7 1293,303.6 1293,286.05 1293,271 1293,271 1293,271 1293,134 1293,125.31 1293,115.63 1293,107.65"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2213.37 313.55 2204.52 309.85 2195.91 304.55 2190 297 2187.84 294.25 2186.62 290.82 2185.96 287.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2188.42 287.36 2185.41 280.59 2183.54 287.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2233.5 290.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="2233.5,292.5",
		pos="e,2185.3,279.08 2213.4,313.55 2204.5,309.85 2195.9,304.55 2190,297 2187.8,294.25 2186.6,290.82 2186,287.36"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 1401.81 313.69 1396.18 303.88 1388 286.87 1388 271 1388 271 1388 271 1388 134 1388 110.66 1363.91 99.92 1339.98 \
95.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.73 92.66 1333.4 93.83 1339.86 97.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1433 200.6 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="1433,202.5",
		pos="e,1331.9,93.563 1401.8,313.69 1396.2,303.88 1388,286.87 1388,271 1388,271 1388,271 1388,134 1388,110.66 1363.9,99.922 1340,95.014"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 1537.87 313.56 1528.72 304.14 1516 287.99 1516 271 1516 271 1516 271 1516 134 1516 98.46 1405.4 91.65 1339.98 \
90.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.38 88.29 1333.36 90.66 1340.33 93.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1570.5 200.6 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="1570.5,202.5",
		pos="e,1331.8,90.645 1537.9,313.56 1528.7,304.14 1516,287.99 1516,271 1516,271 1516,271 1516,134 1516,98.457 1405.4,91.65 1340,90.732"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 1657.81 313.69 1652.18 303.88 1644 286.87 1644 271 1644 271 1644 271 1644 134 1644 103.76 1436.03 94.59 1340.26 \
91.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.48 89.53 1333.42 91.8 1340.35 94.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1669.5 200.6 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="1669.5,202.5",
		pos="e,1331.9,91.76 1657.8,313.69 1652.2,303.88 1644,286.87 1644,271 1644,271 1644,271 1644,134 1644,103.76 1436,94.594 1340.3,91.979"];
	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 2611.94 313.67 2619.59 310.9 2628.16 307.8 2636 305 2702.58 281.2 2745.17 309.73 2786 252 2798.71 234.03 2796.84 \
170.11 2783 153 2781.83 151.55 2780.53 150.23 2779.13 149.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2780.82 147.21 2773.67 145.24 2778.04 151.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2823 223.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2823,225",
		pos="e,2772.4,144.38 2611.9,313.67 2619.6,310.9 2628.2,307.8 2636,305 2702.6,281.2 2745.2,309.73 2786,252 2798.7,234.03 2796.8,170.11 \
2783,153 2781.8,151.55 2780.5,150.23 2779.1,149.01"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 2569.71 313.53 2561.36 310.26 2551.36 306.86 2542 305 2503.6 297.37 2402.85 310.22 2366 297 2359.72 294.75 2360.21 \
290.42 2354 288 2337.56 281.58 2299.43 277.44 2263.64 274.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2264.23 272.44 2257.08 274.4 2263.89 277.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2381.5 290.6 0 31 6 -sample ",
		label=sample,
		lp="2381.5,292.5",
		pos="e,2255.6,274.29 2569.7,313.53 2561.4,310.26 2551.4,306.86 2542,305 2503.6,297.37 2402.9,310.22 2366,297 2359.7,294.75 2360.2,290.42 \
2354,288 2337.6,281.58 2299.4,277.44 2263.6,274.85"];
	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 2571.45 313.53 2550.42 302.8 2518 284.13 2518 271 2518 271 2518 271 2518 134 2518 103.96 1564.59 93.46 1339.98 \
91.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.22 88.95 1333.2 91.34 1340.18 93.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2547 200.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="2547,202.5",
		pos="e,1331.7,91.324 2571.4,313.53 2550.4,302.8 2518,284.13 2518,271 2518,271 2518,271 2518,134 2518,103.96 1564.6,93.457 1340,91.399"];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2587.18 313.88 2584.27 299.25 2579.7 267.7 2588 243 2594.32 224.2 2608.85 206.58 2620.09 194.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2621.62 196.89 2624.85 190.22 2618.16 193.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2617 245.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="2617,247.5",
		pos="e,2625.9,189.15 2587.2,313.88 2584.3,299.25 2579.7,267.7 2588,243 2594.3,224.2 2608.8,206.58 2620.1,194.96"];
	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2262 215.5 2262 234.5 2506 234.5 2506 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2384 222.5 0 228 46 -Add snv and indel bam-readcount files to a vcf ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="2384,225",
		rects="2262,215.5,2506,234.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 13 2568.18 313.62 2560.1 310.59 2550.71 307.35 2542 305 2481.81 288.79 2450.43 321.59 2404 280 2391.22 268.55 2399.49 \
258.88 2393 243 2392.85 242.64 2392.7 242.29 2392.55 241.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2394.85 241.06 2389.58 235.85 2390.45 243.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2433 268.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="2433,270",
		pos="e,2388.9,234.49 2568.2,313.62 2560.1,310.59 2550.7,307.35 2542,305 2481.8,288.79 2450.4,321.59 2404,280 2391.2,268.55 2399.5,258.88 \
2393,243 2392.9,242.64 2392.7,242.29 2392.5,241.93"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 2983.05 313.74 2974.77 304.23 2963 287.77 2963 271 2963 271 2963 271 2963 134 2963 92.26 1612.06 90.82 1340.29 \
90.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.33 88.5 1333.34 90.95 1340.34 93.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2977 200.6 0 28 7 -alleles ",
		label=alleles,
		lp="2977,202.5",
		pos="e,1331.8,90.956 2983.1,313.74 2974.8,304.23 2963,287.77 2963,271 2963,271 2963,271 2963,134 2963,92.263 1612.1,90.819 1340.3,90.951"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 10 3061.98 313.74 3051.95 304.47 3038 288.45 3038 271 3038 271 3038 271 3038 134 3038 90.27 1618.92 90.44 1340.19 \
90.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.4 88.45 1333.41 90.91 1340.41 93.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3074.5 200.6 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="3074.5,202.5",
		pos="e,1331.9,90.912 3062,313.74 3052,304.47 3038,288.45 3038,271 3038,271 3038,271 3038,134 3038,90.275 1618.9,90.443 1340.2,90.898"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 2824.9 313.6 2839.94 305.16 2859 290.6 2859 271 2859 271 2859 271 2859 179 2859 164.03 2826.75 153.2 2794.88 146.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2795.64 143.81 2788.28 144.76 2794.62 148.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2891 223.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2891,225",
		pos="e,2786.8,144.44 2824.9,313.6 2839.9,305.16 2859,290.6 2859,271 2859,271 2859,271 2859,179 2859,164.03 2826.7,153.2 2794.9,146.16"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2797.19 313.61 2780.18 299.08 2744.03 268.36 2713 243 2692.33 226.1 2668.23 207.04 2652.35 194.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2653.88 192.66 2646.86 190.27 2650.86 196.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2755 245.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="2755,247.5",
		pos="e,2645.7,189.33 2797.2,313.61 2780.2,299.08 2744,268.36 2713,243 2692.3,226.1 2668.2,207.04 2652.3,194.57"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 3153.35 313.62 3148.32 303.74 3141 286.68 3141 271 3141 271 3141 271 3141 134 3141 87.52 1626.99 89.95 1339.74 \
90.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.1 88.38 1333.11 90.85 1340.12 93.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3159 200.6 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="3159,202.5",
		pos="e,1331.6,90.858 3153.4,313.62 3148.3,303.74 3141,286.68 3141,271 3141,271 3141,271 3141,134 3141,87.524 1627,89.953 1339.7,90.833"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 10 3261.71 313.61 3249.41 304.69 3233 289.35 3233 271 3233 271 3233 271 3233 134 3233 85.11 1636.81 89.53 1340.15 \
90.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.26 88.33 1333.27 90.81 1340.28 93.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3294 200.6 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="3294,202.5",
		pos="e,1331.8,90.814 3261.7,313.61 3249.4,304.69 3233,289.35 3233,271 3233,271 3233,271 3233,134 3233,85.107 1636.8,89.533 1340.1,90.778"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 13 3417.77 313.79 3409.19 304.33 3397 287.91 3397 271 3397 271 3397 271 3397 134 3397 64.2 3153.72 111.22 3084 108 \
2730.01 91.64 1586.67 90.94 1340.13 90.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.26 88.53 1333.26 90.98 1340.26 93.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3443 200.6 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="3443,202.5",
		pos="e,1331.7,90.98 3417.8,313.79 3409.2,304.33 3397,287.91 3397,271 3397,271 3397,271 3397,134 3397,64.205 3153.7,111.22 3084,108 2730,\
91.64 1586.7,90.936 1340.1,90.978"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 3526.17 313.53 3522.03 303.57 3516 286.43 3516 271 3516 271 3516 271 3516 134 3516 72.62 3302.3 111.16 3241 108 \
2854.23 88.07 1600.4 90.19 1340.45 90.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.49 88.41 1333.49 90.88 1340.5 93.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3539 200.6 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="3539,202.5",
		pos="e,1332,90.885 3526.2,313.53 3522,303.57 3516,286.43 3516,271 3516,271 3516,271 3516,134 3516,72.616 3302.3,111.16 3241,108 2854.2,\
88.065 1600.4,90.193 1340.4,90.862"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 2013.57 313.62 2035.09 306.18 2067.9 295.37 2097 288 2106.87 285.5 2117.43 283.18 2127.71 281.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2128 283.54 2134.39 279.79 2127.05 278.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2103.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="2103.5,292.5",
		pos="e,2135.9,279.49 2013.6,313.62 2035.1,306.18 2067.9,295.37 2097,288 2106.9,285.5 2117.4,283.18 2127.7,281.1"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 3618.9 313.59 3611.51 303.95 3601 287.37 3601 271 3601 271 3601 271 3601 134 3601 84.11 3427.8 111.1 3378 108 \
3168.71 94.98 1630.11 91.6 1340.08 91.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.38 88.63 1333.38 91.07 1340.37 93.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3641.5 200.6 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="3641.5,202.5",
		pos="e,1331.9,91.064 3618.9,313.59 3611.5,303.95 3601,287.37 3601,271 3601,271 3601,271 3601,134 3601,84.109 3427.8,111.1 3378,108 3168.7,\
94.984 1630.1,91.603 1340.1,91.079"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 2404.15 313.52 2388.05 310.62 2369.74 307.48 2353 305 2323.33 300.61 2313.84 308.16 2286 297 2279.81 294.52 2280.09 \
290.7 2274 288 2268.52 285.57 2262.7 283.49 2256.77 281.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2257.48 279.36 2250.08 279.85 2256.17 284.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2321.5 290.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="2321.5,292.5",
		pos="e,2248.6,279.45 2404.2,313.52 2388.1,310.62 2369.7,307.48 2353,305 2323.3,300.61 2313.8,308.16 2286,297 2279.8,294.52 2280.1,290.7 \
2274,288 2268.5,285.57 2262.7,283.49 2256.8,281.71"];
	add_transcript_expression_data_to_vcf -> pvacseq	[_draw_="c 7 -#000000 B 7 2677.63 125.51 2635.16 119.4 2575.03 111.62 2522 108 2285.87 91.87 1536.17 90.93 1340.23 90.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.37 88.52 1333.37 90.97 1340.38 93.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2628 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="2628,112.5",
		pos="e,1331.9,90.968 2677.6,125.51 2635.2,119.4 2575,111.62 2522,108 2285.9,91.867 1536.2,90.929 1340.2,90.965"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 2255.99 269.73 2300.72 268.86 2353.66 264.95 2372 252 2375.33 249.65 2377.76 246.13 2379.53 242.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2381.82 243.29 2381.9 235.88 2377.21 241.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2385.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="2385.5,247.5",
		pos="e,2382.4,234.45 2256,269.73 2300.7,268.86 2353.7,264.95 2372,252 2375.3,249.65 2377.8,246.13 2379.5,242.43"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 2171.78 260.64 2164.71 255.46 2158.7 248.73 2164 243 2170.94 235.51 2210.26 231.31 2253.79 228.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2253.87 231.4 2260.74 228.6 2253.63 226.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2213 245.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="2213,247.5",
		pos="e,2262.3,228.52 2171.8,260.64 2164.7,255.46 2158.7,248.73 2164,243 2170.9,235.51 2210.3,231.31 2253.8,228.96"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 2239.73 260.53 2246.47 258.32 2253.07 255.53 2259 252 2263.6 249.26 2262.29 245.54 2267 243 2271.99 240.31 2280.27 \
237.99 2290.2 236.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2290.54 238.43 2296.99 234.76 2289.66 233.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2319 245.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="2319,247.5",
		pos="e,2298.5,234.49 2239.7,260.53 2246.5,258.32 2253.1,255.53 2259,252 2263.6,249.26 2262.3,245.54 2267,243 2272,240.31 2280.3,237.99 \
2290.2,236.01"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1254.02 89.35 1170.26 89.59 967.08 87.34 799 63 788.21 61.44 776.66 59.01 766.07 56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 766.67 54.09 759.29 54.78 765.49 58.85 ",
		pos="e,757.82,54.42 1254,89.354 1170.3,89.59 967.08,87.337 799,63 788.21,61.438 776.66,59.006 766.07,56.466"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1254.06 87.74 1190.68 85.3 1061.38 78.73 953 63 941.16 61.28 928.44 58.82 916.74 56.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 917.27 53.91 909.9 54.8 916.21 58.7 ",
		pos="e,908.43,54.47 1254.1,87.74 1190.7,85.304 1061.4,78.732 953,63 941.16,61.281 928.44,58.82 916.74,56.303"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 1254.07 85.45 1212.49 81.33 1144.77 73.72 1087 63 1077.24 61.19 1066.8 58.84 1057.07 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1057.94 54.15 1050.56 54.84 1056.76 58.91 ",
		pos="e,1049.1,54.473 1254.1,85.445 1212.5,81.333 1144.8,73.725 1087,63 1077.2,61.188 1066.8,58.835 1057.1,56.461"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1265.74 80.5 1244.09 73.76 1213.68 64.28 1190.2 56.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1191.06 54.67 1183.65 54.93 1189.61 59.35 ",
		pos="e,1182.2,54.478 1265.7,80.505 1244.1,73.761 1213.7,64.284 1190.2,56.967"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 4 1293 80.71 1293 75.59 1293 68.85 1293 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1295.45 62.78 1293 55.78 1290.55 62.78 ",
		pos="e,1293,54.265 1293,80.709 1293,75.593 1293,68.848 1293,62.666"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 4 1317.89 80.5 1337.48 73.82 1364.94 64.45 1386.3 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1386.89 59.55 1392.73 54.97 1385.31 54.91 ",
		pos="e,1394.2,54.478 1317.9,80.505 1337.5,73.82 1364.9,64.449 1386.3,57.16"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 7 1331.83 85.07 1369.07 80.93 1426.73 73.54 1476 63 1483.97 61.29 1492.44 59.09 1500.4 56.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1500.98 59.22 1507.02 54.92 1499.61 54.52 ",
		pos="e,1508.5,54.496 1331.8,85.073 1369.1,80.934 1426.7,73.544 1476,63 1484,61.295 1492.4,59.092 1500.4,56.841"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1331.67 87.44 1388.57 84.73 1498.04 77.95 1590 63 1600.46 61.3 1611.67 58.89 1622.01 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1622.41 58.85 1628.63 54.81 1621.24 54.09 ",
		pos="e,1630.1,54.449 1331.7,87.439 1388.6,84.731 1498,77.95 1590,63 1600.5,61.299 1611.7,58.895 1622,56.428"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1331.89 88.62 1408.19 87.46 1582.74 82.66 1728 63 1740.35 61.33 1753.63 58.81 1765.75 56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1766.15 58.63 1772.46 54.74 1765.1 53.85 ",
		pos="e,1773.9,54.413 1331.9,88.623 1408.2,87.455 1582.7,82.662 1728,63 1740.3,61.329 1753.6,58.806 1765.8,56.211"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2654.36 170.5 2669.13 164.03 2689.64 155.02 2706.02 147.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2706.87 150.14 2712.29 145.09 2704.9 145.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2698.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="2698.5,157.5",
		pos="e,2713.7,144.48 2654.4,170.5 2669.1,164.03 2689.6,155.02 2706,147.84"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2417.84 215.52 2440.88 209.97 2472.15 202.86 2500 198 2517.86 194.88 2537.14 192.1 2555.39 189.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2555.56 192.19 2562.19 188.88 2554.94 187.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2506.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="2506.5,202.5",
		pos="e,2563.7,188.69 2417.8,215.52 2440.9,209.97 2472.1,202.86 2500,198 2517.9,194.88 2537.1,192.1 2555.4,189.75"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2711 170.5 2711 189.5 2783 189.5 2783 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2747 177.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="2747,180",
		rects="2711,170.5,2783,189.5",
		width=1];
	default1 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 2744.3 170.71 2742.6 165.47 2740.34 158.53 2738.29 152.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2740.66 151.6 2736.16 145.7 2736 153.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2761.5 155.6 0 41 9 -data_type ",
		label=data_type,
		lp="2761.5,157.5",
		pos="e,2735.7,144.27 2744.3,170.71 2742.6,165.47 2740.3,158.53 2738.3,152.24"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2728 215.5 2728 234.5 2778 234.5 2778 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2753 222.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="2753,225",
		rects="2728,215.5,2778,234.5",
		width=0.69444];
	default2 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2746.29 215.65 2741.1 209.78 2733.41 202.25 2725 198 2720.44 195.7 2715.6 193.7 2710.63 191.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2711.58 189.71 2704.17 189.94 2710.11 194.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2757.5 200.6 0 41 9 -data_type ",
		label=data_type,
		lp="2757.5,202.5",
		pos="e,2702.7,189.48 2746.3,215.65 2741.1,209.78 2733.4,202.25 2725,198 2720.4,195.7 2715.6,193.7 2710.6,191.98"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 2463.5 260.5 2463.5 279.5 2510.5 279.5 2510.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2487 267.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="2487,270",
		rects="2463.5,260.5,2510.5,279.5",
		width=0.65278];
	default3 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 4 2466.65 260.5 2450.99 253.97 2429.18 244.86 2411.89 237.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2413.11 235.5 2405.7 235.06 2411.22 240.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2464.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="2464.5,247.5",
		pos="e,2404.3,234.48 2466.7,260.5 2451,253.97 2429.2,244.86 2411.9,237.64"];
}