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	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1459.71 268.51 1451.36 265.24 1441.37 261.84 1432 260 1389.23 251.6 1277.07 266.63 1236 252 1229.72 249.76 1230.26 \
245.29 1224 243 1194.81 232.31 1126.36 227.98 1063.4 226.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1063.52 223.91 1056.47 226.2 1063.41 228.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1265 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="1265,247.5",
		pos="e,1055,226.16 1459.7,268.51 1451.4,265.24 1441.4,261.84 1432,260 1389.2,251.6 1277.1,266.63 1236,252 1229.7,249.76 1230.3,245.29 \
1224,243 1194.8,232.31 1126.4,227.98 1063.4,226.36"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1252 268.58 1241.6 265.4 1229.33 262.05 1218 260 1172.82 251.82 1157.96 268.2 1115 252 1108.76 249.65 1109.21 \
245.42 1103 243 1094.49 239.68 1080.18 236.97 1063.38 234.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1063.7 232.34 1056.45 233.91 1063.1 237.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1133.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1133.5,247.5",
		pos="e,1055,233.73 1252,268.58 1241.6,265.4 1229.3,262.05 1218,260 1172.8,251.82 1158,268.2 1115,252 1108.8,249.65 1109.2,245.42 1103,\
243 1094.5,239.68 1080.2,236.97 1063.4,234.77"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 104.82 268.56 136.68 259.15 181 243 181 226 181 226 181 226 181 134 181 112.66 231.47 101.82 277.73 96.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.82 98.82 284.5 95.61 277.27 93.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 221 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="221,180",
		pos="e,286.01,95.444 104.82,268.56 136.68,259.15 181,243 181,226 181,226 181,226 181,134 181,112.66 231.47,101.82 277.73,96.369"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1091.5 80.5 1091.5 99.5 1234.5 99.5 1234.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1163 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="1163,90",
		rects="1091.5,80.5,1234.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 1652.27 268.54 1550.93 247.91 1299.59 196.27 1293 190 1280.66 178.26 1293.7 166.26 1283 153 1262.58 127.7 1229.08 \
111.61 1202.65 102.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1203.55 99.91 1196.14 99.96 1201.97 104.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1353.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="1353.5,180",
		pos="e,1194.7,99.473 1652.3,268.54 1550.9,247.91 1299.6,196.27 1293,190 1280.7,178.26 1293.7,166.26 1283,153 1262.6,127.7 1229.1,111.61 \
1202.7,102.19"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 466.95 268.57 480.45 265.34 496.39 261.97 511 260 529.41 257.52 661.24 260.01 678 252 682.83 249.69 681.2 245.36 \
686 243 697.54 237.34 751.88 233.27 806.86 230.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 806.94 232.99 813.81 230.2 806.7 228.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 718 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="718,247.5",
		pos="e,815.33,230.13 466.95,268.57 480.45,265.34 496.39,261.97 511,260 529.41,257.52 661.24,260.01 678,252 682.83,249.69 681.2,245.36 \
686,243 697.54,237.34 751.88,233.27 806.86,230.54"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 13 229.14 268.66 233.85 265.89 239.15 262.8 244 260 270.56 244.69 304 256.65 304 226 304 226 304 226 304 134 304 \
120.82 314.14 110.73 325.2 103.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 326.36 105.81 331.19 100.18 323.91 101.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="317.5,180",
		pos="e,332.5,99.426 229.14,268.66 233.85,265.89 239.15,262.8 244,260 270.56,244.69 304,256.65 304,226 304,226 304,226 304,134 304,120.82 \
314.14,110.73 325.2,103.65"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 604.67 268.54 616.77 265.39 630.96 262.08 644 260 667.55 256.25 729.63 262.57 751 252 755.8 249.63 754.23 245.42 \
759 243 768.66 238.09 786.39 234.59 807 232.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 807.16 234.55 813.84 231.34 806.61 229.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 768.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="768.5,247.5",
		pos="e,815.34,231.17 604.67,268.54 616.77,265.39 630.96,262.08 644,260 667.55,256.25 729.63,262.57 751,252 755.8,249.63 754.23,245.42 \
759,243 768.66,238.09 786.39,234.59 807,232.11"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 741.91 268.57 753.17 264.02 767 258.1 779 252 785.93 248.47 786.65 245.52 794 243 801.7 240.36 809.75 238.12 817.95 \
236.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 818.38 238.63 824.7 234.75 817.34 233.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 830 245.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="830,247.5",
		pos="e,826.18,234.43 741.91,268.57 753.17,264.02 767,258.1 779,252 785.93,248.47 786.65,245.52 794,243 801.7,240.36 809.75,238.12 817.95,\
236.22"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 10 1797.57 268.5 1757.71 254.04 1681 226.19 1681 226 1681 226 1681 226 1681 134 1681 105.09 1592.03 95.57 1539.19 \
92.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1539.36 90.03 1532.23 92.1 1539.09 94.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1710 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1710,180",
		pos="e,1530.7,92.014 1797.6,268.5 1757.7,254.04 1681,226.19 1681,226 1681,226 1681,226 1681,134 1681,105.09 1592,95.574 1539.2,92.475"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 866.58 268.7 865.78 261.11 865.94 250.02 872 243 873.23 241.57 874.57 240.26 876 239.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 877.13 241.24 881.51 235.25 874.35 237.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 900.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="900.5,247.5",
		pos="e,882.75,234.39 866.58,268.7 865.78,261.11 865.94,250.02 872,243 873.23,241.57 874.57,240.26 876,239.05"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 962.13 268.68 952.92 264.9 944.4 259.55 938 252 935.75 249.35 934.58 245.95 934.04 242.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 936.5 242.61 933.81 235.7 931.6 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 981 245.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="981,247.5",
		pos="e,933.76,234.19 962.13,268.68 952.92,264.9 944.4,259.55 938,252 935.75,249.35 934.58,245.95 934.04,242.5"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 10 1905.15 268.55 1878.79 258.45 1840 241.05 1840 226 1840 226 1840 226 1840 134 1840 103.97 1627.87 94.54 1539.22 \
91.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1539.37 89.47 1532.3 91.72 1539.23 94.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1884.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1884.5,180",
		pos="e,1530.8,91.673 1905.1,268.55 1878.8,258.45 1840,241.05 1840,226 1840,226 1840,226 1840,134 1840,103.97 1627.9,94.541 1539.2,91.914"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 935.38 215.56 936.04 201.14 937.39 171.48 938.24 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 940.68 152.9 938.55 145.8 935.79 152.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 950 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="950,180",
		pos="e,938.62,144.28 935.38,215.56 936.04,201.14 937.39,171.48 938.24,152.73"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1172 170.5 1172 189.5 1282 189.5 1282 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1227 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1227,180",
		rects="1172,170.5,1282,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 1054.91 223.52 1127.29 222.08 1208.01 217.98 1221 207 1223.83 204.61 1225.47 201.18 1226.4 197.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1228.8 198.11 1227.28 190.85 1223.95 197.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1237.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1237.5,202.5",
		pos="e,1227.5,189.35 1054.9,223.52 1127.3,222.08 1208,217.98 1221,207 1223.8,204.61 1225.5,201.18 1226.4,197.59"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 639 125.5 639 144.5 731 144.5 731 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 685 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="685,135",
		rects="639,125.5,731,144.5",
		width=1.2778];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 639.19 128.07 584.34 120.96 491.77 108.97 426.8 100.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 427.38 98.16 420.12 99.69 426.75 103.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 557.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="557.5,112.5",
		pos="e,418.62,99.499 639.19,128.07 584.34,120.96 491.77,108.97 426.8,100.56"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 7 419.75 87.73 499.81 85.5 628.87 79.4 674 63 676.86 61.96 679.68 60.49 682.33 58.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 683.32 61.14 687.63 55.1 680.49 57.14 ",
		pos="e,688.86,54.231 419.75,87.734 499.81,85.497 628.87,79.399 674,63 676.86,61.962 679.68,60.489 682.33,58.838"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 411.08 80.5 471.2 71.71 563.09 58.27 612.58 51.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 612.65 53.5 619.23 50.06 611.95 48.65 ",
		pos="e,620.72,49.843 411.08,80.505 471.2,71.712 563.09,58.273 612.58,51.035"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 939 125.56 939 111.14 939 81.48 939 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 941.45 62.8 939 55.8 936.55 62.8 ",
		pos="e,939,54.284 939,125.56 939,111.14 939,81.476 939,62.727"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 950.7 125.56 972.07 110.15 1017.55 77.34 1042.93 59.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1044.04 61.25 1048.29 55.17 1041.18 57.28 ",
		pos="e,1049.5,54.284 950.7,125.56 972.07,110.15 1017.5,77.342 1042.9,59.036"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 925.1 125.56 899.48 110.02 844.72 76.78 814.71 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 816.2 56.61 808.94 55.07 813.66 60.8 ",
		pos="e,807.65,54.284 925.1,125.56 899.48,110.02 844.72,76.78 814.71,58.57"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 4 983.26 125.5 1019.92 118.47 1072.09 108.45 1110.79 101.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.94 103.49 1117.35 99.76 1110.01 98.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1110.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1110.5,112.5",
		pos="e,1118.8,99.478 983.26,125.5 1019.9,118.47 1072.1,108.45 1110.8,101.02"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 1172.05 174.64 1067.86 166.37 842.79 148.52 739.2 140.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.44 137.86 732.26 139.75 739.05 142.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1013.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1013.5,157.5",
		pos="e,730.75,139.63 1172,174.64 1067.9,166.37 842.79,148.52 739.2,140.3"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1327 125.5 1327 144.5 1465 144.5 1465 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1396 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="1396,135",
		rects="1327,125.5,1465,144.5",
		width=1.9167];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 4 1260.39 170.5 1287.47 163.61 1325.77 153.87 1354.77 146.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1355.03 148.95 1361.21 144.85 1353.83 144.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1335.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1335.5,157.5",
		pos="e,1362.7,144.48 1260.4,170.5 1287.5,163.61 1325.8,153.87 1354.8,146.49"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1163 80.71 1163 75.59 1163 68.85 1163 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1165.45 62.78 1163 55.78 1160.55 62.78 ",
		pos="e,1163,54.265 1163,80.709 1163,75.593 1163,68.848 1163,62.666"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1471.17 80.5 1447.28 73.7 1413.62 64.12 1387.84 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1388.63 54.45 1381.23 54.89 1387.29 59.17 ",
		pos="e,1379.8,54.478 1471.2,80.505 1447.3,73.702 1413.6,64.118 1387.8,56.776"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1501 80.71 1501 75.59 1501 68.85 1501 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1503.45 62.78 1501 55.78 1498.55 62.78 ",
		pos="e,1501,54.265 1501,80.709 1501,75.593 1501,68.848 1501,62.666"];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 1381.91 125.56 1355.94 110.02 1300.42 76.78 1270 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1271.4 56.55 1264.14 55.06 1268.88 60.76 ",
		pos="e,1262.8,54.284 1381.9,125.56 1355.9,110.02 1300.4,76.78 1270,58.57"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 1416.74 125.5 1432.71 118.97 1454.94 109.86 1472.57 102.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1473.35 104.97 1478.9 100.05 1471.49 100.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1466.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1466.5,112.5",
		pos="e,1480.3,99.478 1416.7,125.5 1432.7,118.97 1454.9,109.86 1472.6,102.64"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1415.5 170.5 1415.5 189.5 1492.5 189.5 1492.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1454 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="1454,180",
		rects="1415.5,170.5,1492.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 7 1442.22 170.78 1438.31 168.02 1433.95 164.91 1430 162 1424.45 157.91 1418.45 153.37 1413.06 149.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1414.88 147.55 1407.84 145.22 1411.89 151.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1463.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="1463.5,157.5",
		pos="e,1406.6,144.3 1442.2,170.78 1438.3,168.02 1433.9,164.91 1430,162 1424.4,157.91 1418.4,153.37 1413.1,149.24"];
}