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	strand -> kallisto	[_draw_="c 7 -#000000 B 4 1581.52 268.6 1566.46 245.53 1524.3 180.9 1504.94 151.24 ",
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	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 1234.99 268.69 1226.24 263.83 1214.99 257.58 1205 252 1197.88 248.02 1196.74 245.59 1189 243 1181.07 240.34 1172.73 \
238.1 1164.27 236.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1164.96 233.85 1157.61 234.81 1163.96 238.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1223.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1223.5,247.5",
		pos="e,1156.1,234.5 1235,268.69 1226.2,263.83 1215,257.58 1205,252 1197.9,248.02 1196.7,245.59 1189,243 1181.1,240.34 1172.7,238.1 1164.3,\
236.21"];
	kallisto_index -> kallisto	[_draw_="c 7 -#000000 B 7 1647.84 268.59 1631.95 254.04 1598.16 223.29 1569 198 1549.46 181.05 1526.58 162 1511.49 149.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1513.27 147.84 1506.31 145.28 1510.16 151.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1606.5 200.6 0 55 14 -kallisto_index ",
		label=kallisto_index,
		lp="1606.5,202.5",
		pos="e,1505.1,144.32 1647.8,268.59 1631.9,254.04 1598.2,223.29 1569,198 1549.5,181.05 1526.6,162 1511.5,149.54"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1336.58 268.56 1327.12 265.52 1316.14 262.29 1306 260 1281.91 254.56 1273.81 261.48 1251 252 1244.84 249.44 1245.22 \
245.41 1239 243 1229.02 239.13 1211.41 236.11 1191.08 233.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1191.58 231.35 1184.35 233.02 1191.05 236.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1287.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="1287.5,247.5",
		pos="e,1182.8,232.86 1336.6,268.56 1327.1,265.52 1316.1,262.29 1306,260 1281.9,254.56 1273.8,261.48 1251,252 1244.8,249.44 1245.2,245.41 \
1239,243 1229,239.13 1211.4,236.11 1191.1,233.76"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 16 313.85 268.5 324.61 265.31 337.29 261.97 349 260 405.65 250.46 420.82 257.49 478 252 504.55 249.45 933.29 206.81 \
954 190 961.31 184.06 955.71 177.79 961 170 979.94 142.09 1011.11 118.01 1031.6 104 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1032.9 106.07 1037.36 100.14 1030.18 102 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1001 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1001,180",
		pos="e,1038.6,99.301 313.85,268.5 324.61,265.31 337.29,261.97 349,260 405.65,250.46 420.82,257.49 478,252 504.55,249.45 933.29,206.81 \
954,190 961.31,184.06 955.71,177.79 961,170 979.94,142.09 1011.1,118.01 1031.6,104"];
	refFlat -> generate_qc_metrics	[_draw_="c 7 -#000000 B 22 384.23 268.61 389.37 265.26 395.71 261.78 402 260 441.35 248.86 730.89 263.95 770 252 777.07 249.84 777.11 245.7 \
784 243 785.03 242.6 939.9 215.15 941 215 975.51 210.16 986.5 219.58 1019 207 1030.85 202.41 1035.71 201.05 1042 190 1056.67 164.22 \
1056.16 128.49 1054.23 107.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1056.68 107.55 1053.47 100.87 1051.81 108.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1063.5 178.1 0 27 7 -refFlat ",
		label=refFlat,
		lp="1063.5,180",
		pos="e,1053.3,99.365 384.23,268.61 389.37,265.26 395.71,261.78 402,260 441.35,248.86 730.89,263.95 770,252 777.07,249.84 777.11,245.7 \
784,243 785.03,242.6 939.9,215.15 941,215 975.51,210.16 986.5,219.58 1019,207 1030.9,202.41 1035.7,201.05 1042,190 1056.7,164.22 \
1056.2,128.49 1054.2,107.75"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1454.94 268.58 1441.94 265.52 1426.84 262.25 1413 260 1377.73 254.26 1366.29 264.97 1333 252 1326.79 249.58 1327.25 \
245.32 1321 243 1297.03 234.12 1243.31 229.78 1191.06 227.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1191.29 225.25 1184.21 227.43 1191.11 230.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1365 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1365,247.5",
		pos="e,1182.7,227.38 1454.9,268.58 1441.9,265.52 1426.8,262.25 1413,260 1377.7,254.26 1366.3,264.97 1333,252 1326.8,249.58 1327.3,245.32 \
1321,243 1297,234.12 1243.3,229.78 1191.1,227.69"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 463.82 268.63 472.26 265.29 482.45 261.81 492 260 523.56 254.02 751.88 265.56 781 252 785.85 249.74 784.19 245.34 \
789 243 795.99 239.6 867 235.25 934.97 231.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 934.86 234.26 941.73 231.46 934.61 229.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 818 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="818,247.5",
		pos="e,943.24,231.39 463.82,268.63 472.26,265.29 482.45,261.81 492,260 523.56,254.02 751.88,265.56 781,252 785.85,249.74 784.19,245.34 \
789,243 795.99,239.6 867,235.25 934.97,231.8"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 585.61 268.55 597.93 265.28 612.56 261.88 626 260 650.45 256.59 825.67 262.52 848 252 852.84 249.72 851.21 245.39 \
856 243 870.82 235.6 901.67 231.32 935.13 228.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 934.9 231.35 941.71 228.43 934.56 226.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 865.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="865.5,247.5",
		pos="e,943.22,228.33 585.61,268.55 597.93,265.28 612.56,261.88 626,260 650.45,256.59 825.67,262.52 848,252 852.84,249.72 851.21,245.39 \
856,243 870.82,235.6 901.67,231.32 935.13,228.88"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 13 79.8 268.57 87.88 265.53 97.27 262.3 106 260 149.81 248.47 307 271.3 307 226 307 226 307 226 307 134 307 95.41 \
588.62 91.16 692.83 90.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 692.68 93.36 699.67 90.9 692.67 88.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 336 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="336,180",
		pos="e,701.19,90.896 79.802,268.57 87.88,265.53 97.273,262.3 106,260 149.81,248.47 307,271.3 307,226 307,226 307,226 307,134 307,95.408 \
588.62,91.159 692.83,90.908"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 13 195.58 268.5 206.85 265.42 219.95 262.17 232 260 266.64 253.75 547 261.2 547 226 547 226 547 226 547 134 547 104.34 \
638.8 95.13 692.72 92.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 692.64 94.73 699.52 91.94 692.4 89.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 591.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="591.5,180",
		pos="e,701.03,91.868 195.58,268.5 206.85,265.42 219.95,262.17 232,260 266.64,253.75 547,261.2 547,226 547,226 547,226 547,134 547,104.34 \
638.8,95.127 692.72,92.273"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 694.43 268.59 703.68 265.32 714.73 261.92 725 260 758.03 253.84 845.72 266.57 876 252 880.82 249.68 879.23 245.42 \
884 243 894.17 237.84 913.1 234.25 934.97 231.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 934.95 234.2 941.65 231.02 934.42 229.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 917 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="917,247.5",
		pos="e,943.15,230.86 694.43,268.59 703.68,265.32 714.73,261.92 725,260 758.03,253.84 845.72,266.57 876,252 880.82,249.68 879.23,245.42 \
884,243 894.17,237.84 913.1,234.25 934.97,231.74"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 7 1182.86 220.39 1272.14 216.31 1385.75 207.74 1429 190 1450.23 181.29 1469.94 163.34 1482.2 150.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1483.91 152.28 1486.87 145.48 1480.31 148.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1473 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="1473,180",
		pos="e,1487.9,144.36 1182.9,220.39 1272.1,216.31 1385.8,207.74 1429,190 1450.2,181.29 1469.9,163.34 1482.2,150.52"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 844 170.5 844 189.5 954 189.5 954 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 899 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="899,180",
		rects="844,170.5,954,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 1030.6 215.5 1004.43 208.64 967.47 198.95 939.37 191.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 940.19 189.27 932.8 189.86 938.95 194.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1006.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1006.5,202.5",
		pos="e,931.33,189.48 1030.6,215.5 1004.4,208.64 967.47,198.95 939.37,191.59"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 738 125.5 738 144.5 876 144.5 876 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 807 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="807,135",
		rects="738,125.5,876,144.5",
		width=1.9167];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 7 826.02 125.59 855.76 112.42 915.02 86.03 965 63 968.48 61.39 972.15 59.69 975.75 58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 976.8 60.21 982.08 55.01 974.71 55.78 ",
		pos="e,983.45,54.367 826.02,125.59 855.76,112.42 915.02,86.029 965,63 968.48,61.395 972.15,59.687 975.75,57.995"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 791.98 125.5 780.95 119.26 765.78 110.68 753.32 103.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 754.6 101.54 747.3 100.22 752.19 105.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 784.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="784.5,112.5",
		pos="e,745.98,99.478 791.98,125.5 780.95,119.26 765.78,110.68 753.32,103.63"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 880 125.5 880 144.5 972 144.5 972 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 926 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="926,135",
		rects="880,125.5,972,144.5",
		width=1.2778];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 7 933.29 125.63 938.9 119.75 947.16 112.21 956 108 962.68 104.82 969.87 102.23 977.21 100.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 977.61 102.55 983.75 98.4 976.36 97.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 965.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="965.5,112.5",
		pos="e,985.22,98.015 933.29,125.63 938.9,119.75 947.16,112.21 956,108 962.68,104.82 969.87,102.23 977.21,100.12"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 760.83 80.5 784.72 73.7 818.38 64.12 844.16 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 844.71 59.17 850.77 54.89 843.37 54.45 ",
		pos="e,852.23,54.478 760.83,80.505 784.72,73.702 818.38,64.118 844.16,56.776"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 731 80.71 731 75.59 731 68.85 731 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 733.45 62.78 731 55.78 728.55 62.78 ",
		pos="e,731,54.265 731,80.709 731,75.593 731,68.848 731,62.666"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 1053.16 80.71 1053.87 75.59 1054.81 68.85 1055.67 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1058.1 63.04 1056.64 55.76 1053.24 62.36 ",
		pos="e,1056.8,54.265 1053.2,80.709 1053.9,75.593 1054.8,68.848 1055.7,62.666"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 1063.26 80.5 1071.22 74.5 1082.06 66.32 1091.19 59.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1092.44 61.56 1096.55 55.39 1089.49 57.65 ",
		pos="e,1097.8,54.478 1063.3,80.505 1071.2,74.497 1082.1,66.32 1091.2,59.435"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 1489.76 80.5 1480.22 74.38 1467.16 66 1456.3 59.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1457.7 57.01 1450.48 55.3 1455.05 61.14 ",
		pos="e,1449.2,54.478 1489.8,80.505 1480.2,74.38 1467.2,65.999 1456.3,59.031"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 7 1467.07 125.57 1458.1 122.84 1448.13 119.81 1439 117 1370.54 95.95 1290.66 70.98 1245.94 56.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1246.86 54.69 1239.45 54.93 1245.4 59.36 ",
		pos="e,1238,54.478 1467.1,125.57 1458.1,122.84 1448.1,119.81 1439,117 1370.5,95.951 1290.7,70.98 1245.9,56.964"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 13 1471.06 125.57 1457.92 119.97 1442.08 111.51 1431 100 1421.08 89.69 1428.07 80.07 1417 71 1406 61.98 1399.66 66.99 \
1386 63 1379.72 61.16 1373.05 59.09 1366.66 57.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1367.62 54.76 1360.2 54.92 1366.1 59.42 ",
		pos="e,1358.8,54.45 1471.1,125.57 1457.9,119.97 1442.1,111.51 1431,100 1421.1,89.686 1428.1,80.075 1417,71 1406,61.978 1399.7,66.991 \
1386,63 1379.7,61.165 1373.1,59.086 1366.7,57.027"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 7 1539.46 129.5 1555.18 126.92 1570.17 122.96 1575 117 1587.85 101.14 1578.11 77.02 1569.17 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1571.47 60.45 1565.74 55.75 1567.29 63 ",
		pos="e,1565,54.46 1539.5,129.5 1555.2,126.92 1570.2,122.96 1575,117 1587.8,101.14 1578.1,77.017 1569.2,61.381"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 1496.1 125.77 1496.82 120.65 1497.85 113.92 1499 108 1499.03 107.82 1499.07 107.64 1499.11 107.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1501.47 108.11 1500.59 100.75 1496.69 107.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1538.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="1538.5,112.5",
		pos="e,1500.9,99.273 1496.1,125.77 1496.8,120.65 1497.9,113.92 1499,108 1499,107.82 1499.1,107.64 1499.1,107.46"];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 7 892.29 170.57 887.28 164.81 879.95 157.46 872 153 868.06 150.79 863.82 148.86 859.47 147.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 860.39 144.9 852.97 144.9 858.77 149.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 892.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="892.5,157.5",
		pos="e,851.54,144.4 892.29,170.57 887.28,164.81 879.95,157.46 872,153 868.06,150.79 863.82,148.86 859.47,147.17"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 904.21 170.71 907.64 165.24 912.25 157.9 916.34 151.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 918.36 152.78 920.01 145.55 914.21 150.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 923.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="923.5,157.5",
		pos="e,920.81,144.27 904.21,170.71 907.64,165.24 912.25,157.9 916.34,151.38"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 762.5 170.5 762.5 189.5 839.5 189.5 839.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 801 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="801,180",
		rects="762.5,170.5,839.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 4 802.16 170.71 802.87 165.59 803.81 158.85 804.67 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 807.1 153.04 805.64 145.76 802.24 152.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 837.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="837.5,157.5",
		pos="e,805.85,144.27 802.16,170.71 802.87,165.59 803.81,158.85 804.67,152.67"];
}