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			label=minimum_fold_change,
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			rects="3970,366.5,4098,385.5",
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		alleles	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 4102.5 366.5 4102.5 385.5 4151.5 385.5 4151.5 366.5 ",
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			label=variants_to_table_fields,
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			rects="320.5,366.5,453.5,385.5",
			width=1.8472];
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			label=readcount_minimum_mapping_quality,
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			rects="1266.5,366.5,1471.5,385.5",
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	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1136 313.5 1136 332.5 1276 332.5 1276 313.5 ",
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	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1504.37 366.53 1494.25 363.6 1482.66 360.44 1472 358 1409.64 343.74 1337.6 334.99 1284.22 329.95 ",
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		pos="e,1275.8,329.17 1504.4,366.53 1494.2,363.6 1482.7,360.44 1472,358 1409.6,343.74 1337.6,334.99 1284.2,329.95"];
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2924 88.5 2924 107.5 3002 107.5 3002 88.5 ",
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		height=0.27778,
		label="run pVACseq",
		pos="2963,98",
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		width=1.0833];
	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 10 3005.47 366.7 3004.88 356.61 3004 339.06 3004 324 3004 324 3004 324 3004 142 3004 129.72 2995.13 119.55 2985.64 \
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		label=expn_val,
		lp="3022,233",
		pos="e,2978.7,107.35 3005.5,366.7 3004.9,356.61 3004,339.06 3004,324 3004,324 3004,324 3004,142 3004,129.72 2995.1,119.55 2985.6,112.2"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 4208.28 366.68 4198.54 357.36 4185 341.3 4185 324 4185 324 4185 324 4185 142 4185 58.09 4081.66 122.48 3998 116 \
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		label=normal_sample_name,
		lp="4230,233",
		pos="e,3001.8,99.005 4208.3,366.68 4198.5,357.36 4185,341.3 4185,324 4185,324 4185,324 4185,142 4185,58.089 4081.7,122.48 3998,116 3802.1,\
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	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 13 4325.19 366.54 4318.09 356.87 4308 340.24 4308 324 4308 324 4308 324 4308 142 4308 94.09 4141.79 119.25 4094 116 \
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		label=epitope_lengths,
		lp="4341.5,233",
		pos="e,3001.9,99.031 4325.2,366.54 4318.1,356.87 4308,340.24 4308,324 4308,324 4308,324 4308,142 4308,94.095 4141.8,119.25 4094,116 3878.2,\
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	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 731.5 178.5 731.5 197.5 874.5 197.5 874.5 178.5 ",
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		height=0.27778,
		label="add expression info to vcf",
		pos="803,188",
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	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 536.66 366.69 544.65 357.14 556 340.63 556 324 556 324 556 324 556 232 556 214.71 651.13 202.32 723.32 195.41 ",
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		label=expression_file,
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		pos="e,731.56,194.63 536.66,366.69 544.65,357.14 556,340.63 556,324 556,324 556,324 556,232 556,214.71 651.13,202.32 723.32,195.41"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 10 1994.53 366.5 2001.33 356.78 2011 340.12 2011 324 2011 324 2011 324 2011 142 2011 96.2 2723.51 97.46 2915.72 98.64 ",
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		label=phased_proximal_variants_vcf,
		lp="2072,233",
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	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 641.5 35.5 641.5 54.5 798.5 54.5 798.5 35.5 ",
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	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 10 101.17 366.59 139.5 355.12 202 334.76 202 324 202 324 202 324 202 97 202 54.18 485.96 46.81 633.4 45.87 ",
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		label=vep_fields,
		lp="223,210.5",
		pos="e,641.61,45.823 101.17,366.59 139.5,355.12 202,334.76 202,324 202,324 202,324 202,97 202,54.18 485.96,46.81 633.4,45.869"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 970.3 366.6 978.66 363.33 988.65 359.93 998 358 1056.87 345.87 1074.1 361.98 1133 350 1148.76 346.79 1165.72 340.91 \
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		label=sample,
		lp="1178.5,345.5",
		pos="e,1186.9,332.48 970.3,366.6 978.66,363.33 988.65,359.93 998,358 1056.9,345.87 1074.1,361.98 1133,350 1148.8,346.79 1165.7,340.91 \
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	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 16 970.29 366.51 978.64 363.24 988.63 359.84 998 358 1083.99 341.12 1108.04 360.81 1195 350 1235.47 344.97 1283 364.78 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.84 101.39 2922.84 98.95 2915.84 96.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1312 231.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1312,233",
		pos="e,2924.4,98.95 970.29,366.51 978.64,363.24 988.63,359.84 998,358 1084,341.12 1108,360.81 1195,350 1235.5,344.97 1283,364.78 1283,\
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	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 19 930.88 366.63 914.37 359.21 890.88 347.34 873 333 856.04 319.4 858.46 308.95 841 296 833.97 290.79 829.33 294.05 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 852 276.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="852,278",
		pos="e,792.54,197.42 930.88,366.63 914.37,359.21 890.88,347.34 873,333 856.04,319.4 858.46,308.95 841,296 833.97,290.79 829.33,294.05 \
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	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 947 268.5 947 287.5 1191 287.5 1191 268.5 ",
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		label="Add snv and indel bam-readcount files to a vcf",
		pos="1069,278",
		rects="947,268.5,1191,287.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 949.07 366.74 945.85 350.73 941.46 315.32 960 296 962.17 293.74 965.55 291.78 969.82 290.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 970.44 292.46 976.32 287.94 968.91 287.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 978 321.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="978,323",
		pos="e,977.76,287.47 949.07,366.74 945.85,350.73 941.46,315.32 960,296 962.17,293.74 965.55,291.78 969.82,290.09"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 924.5 223.5 924.5 242.5 1067.5 242.5 1067.5 223.5 ",
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		height=0.27778,
		label="add expression info to vcf",
		pos="996,233",
		rects="924.5,223.5,1067.5,242.5",
		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 973.9 366.55 981.54 363.78 990.12 360.71 998 358 1059.01 337.03 1073.15 327.54 1136 313 1148.46 310.12 1184.61 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1075.95 235.62 1068.76 237.45 1075.52 240.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1227 298.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1227,300.5",
		pos="e,1067.3,237.32 973.9,366.55 981.54,363.78 990.12,360.71 998,358 1059,337.03 1073.1,327.54 1136,313 1148.5,310.12 1184.6,314.65 \
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	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 580.5 88.5 580.5 107.5 721.5 107.5 721.5 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 651 95.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="651,98",
		rects="580.5,88.5,721.5,107.5",
		width=1.9583];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 259.8 366.52 280.7 359.21 303 346.2 303 324 303 324 303 324 303 142 303 115.06 469.4 104.82 572.07 101.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 572.16 103.51 579.06 100.81 571.98 98.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 336 231.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="336,233",
		pos="e,580.58,100.76 259.8,366.52 280.7,359.21 303,346.2 303,324 303,324 303,324 303,142 303,115.06 469.4,104.82 572.07,101.06"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 2159.84 366.74 2161.91 356.7 2165 339.19 2165 324 2165 324 2165 324 2165 142 2165 104.16 2744.69 99.59 2915.92 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2228 231.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="2228,233",
		pos="e,2924.2,99.037 2159.8,366.74 2161.9,356.7 2165,339.19 2165,324 2165,324 2165,324 2165,142 2165,104.16 2744.7,99.586 2915.9,99.061"];
	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 13 2292.78 366.52 2315.58 354.03 2355 331.36 2355 324 2355 324 2355 324 2355 142 2355 105.04 2397.6 122.44 2434 116 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.59 101.24 2922.59 98.81 2915.6 96.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2375.5 231.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="2375.5,233",
		pos="e,2924.1,98.814 2292.8,366.52 2315.6,354.03 2355,331.36 2355,324 2355,324 2355,324 2355,142 2355,105.04 2397.6,122.44 2434,116 2525.7,\
99.781 2803.9,98.589 2915.7,98.795"];
	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 13 2392.08 366.55 2410.53 358.76 2432 345.14 2432 324 2432 324 2432 324 2432 142 2432 88.73 2496.18 122.9 2549 116 \
2681.31 98.72 2839.24 97.56 2916.19 98.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.74 100.67 2922.76 98.29 2915.79 95.77 ",
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		label=net_chop_method,
		lp="2468.5,233",
		pos="e,2924.3,98.306 2392.1,366.55 2410.5,358.76 2432,345.14 2432,324 2432,324 2432,324 2432,142 2432,88.732 2496.2,122.9 2549,116 2681.3,\
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	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 672.01 366.66 681.09 363.4 691.93 359.98 702 358 742.57 350.01 996.93 335.34 1128.04 328.17 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 935.5 343.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="935.5,345.5",
		pos="e,1136.5,327.7 672.01,366.66 681.09,363.4 691.93,359.98 702,358 742.57,350.01 996.93,335.34 1128,328.17"];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 10 651 366.7 651 356.6 651 339.05 651 324 651 324 651 324 651 142 651 133.31 651 123.63 651 115.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 653.45 115.76 651 108.76 648.55 115.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 671 231.1 0 40 9 -reference ",
		label=reference,
		lp="671,233",
		pos="e,651,107.24 651,366.7 651,356.6 651,339.05 651,324 651,324 651,324 651,142 651,133.31 651,123.63 651,115.65"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2474.7 366.64 2495.12 355.86 2527 336.96 2527 324 2527 324 2527 324 2527 142 2527 103.27 2803.03 98.95 2915.83 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.8 101.25 2922.79 98.8 2915.79 96.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2550 231.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="2550,233",
		pos="e,2924.3,98.797 2474.7,366.64 2495.1,355.86 2527,336.96 2527,324 2527,324 2527,324 2527,142 2527,103.27 2803,98.948 2915.8,98.801"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 2542.68 366.66 2560.11 355.55 2588 335.91 2588 324 2588 324 2588 324 2588 142 2588 109.37 2815.04 101.48 2915.8 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.81 102.04 2922.77 99.47 2915.73 97.14 ",
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		label=tdna_cov,
		lp="2606.5,233",
		pos="e,2924.3,99.441 2542.7,366.66 2560.1,355.55 2588,335.91 2588,324 2588,324 2588,324 2588,142 2588,109.37 2815,101.48 2915.8,99.592"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 10 2629.92 366.66 2635.25 356.81 2643 339.77 2643 324 2643 324 2643 324 2643 142 2643 114.81 2826.75 104.14 2915.77 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.67 103.02 2922.57 100.3 2915.48 98.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2687.5 231.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="2687.5,233",
		pos="e,2924.1,100.24 2629.9,366.66 2635.2,356.81 2643,339.77 2643,324 2643,324 2643,324 2643,142 2643,114.81 2826.8,104.14 2915.8,100.56"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 2753.01 366.81 2759.53 357.1 2769 340.2 2769 324 2769 324 2769 324 2769 142 2769 112 2858.57 102.91 2915.98 100.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.81 102.63 2922.7 99.88 2915.59 97.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2809.5 231.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="2809.5,233",
		pos="e,2924.2,99.814 2753,366.81 2759.5,357.1 2769,340.2 2769,324 2769,324 2769,324 2769,142 2769,112 2858.6,102.91 2916,100.17"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 2848 366.52 2858.58 357.32 2873 341.56 2873 324 2873 324 2873 324 2873 142 2873 120.58 2894.01 109.82 2915.73 \
104.42 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2890.5 231.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="2890.5,233",
		pos="e,2924,102.6 2848,366.52 2858.6,357.32 2873,341.56 2873,324 2873,324 2873,324 2873,142 2873,120.58 2894,109.82 2915.7,104.42"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 2921.53 366.7 2922.12 356.61 2923 339.06 2923 324 2923 324 2923 324 2923 142 2923 129.86 2931.66 119.71 2940.92 \
112.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2942.19 114.42 2946.42 108.33 2939.32 110.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2958 231.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="2958,233",
		pos="e,2947.6,107.44 2921.5,366.7 2922.1,356.61 2923,339.06 2923,324 2923,324 2923,324 2923,142 2923,129.86 2931.7,119.71 2940.9,112.32"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 748.01 366.73 745.53 344.33 740.03 283.17 752 268 778.52 234.4 818.96 276.97 845 243 855.01 229.95 854.19 219.64 \
845 206 844.18 204.79 843.27 203.66 842.26 202.62 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 784 276.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="784,278",
		pos="e,835.75,197.47 748.01,366.73 745.53,344.33 740.03,283.17 752,268 778.52,234.4 818.96,276.97 845,243 855.01,229.95 854.19,219.64 \
845,206 844.18,204.79 843.27,203.66 842.26,202.62"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 754.67 366.63 766.66 349.76 796.4 311.89 832 296 852.56 286.82 913.46 299.18 933 288 942.42 282.61 939.31 275.66 \
947 268 955.02 260.01 965.14 252.64 974.09 246.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 975.35 248.92 979.98 243.12 972.75 244.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 864 298.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="864,300.5",
		pos="e,981.26,242.32 754.67,366.63 766.66,349.76 796.4,311.89 832,296 852.56,286.82 913.46,299.18 933,288 942.42,282.61 939.31,275.66 \
947,268 955.02,260.01 965.14,252.64 974.09,246.82"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 10 3076.63 366.59 3071.89 356.68 3065 339.59 3065 324 3065 324 3065 324 3065 142 3065 116.14 3036.81 105.58 3010.07 \
101.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.62 98.99 3003.35 100.48 3009.96 103.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3091.5 231.1 0 53 11 -netmhc_stab ",
		label=netmhc_stab,
		lp="3091.5,233",
		pos="e,3001.9,100.28 3076.6,366.59 3071.9,356.68 3065,339.59 3065,324 3065,324 3065,324 3065,142 3065,116.14 3036.8,105.58 3010.1,101.39"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 10 3153.9 366.56 3149.46 356.62 3143 339.51 3143 324 3143 324 3143 324 3143 142 3143 114.63 3063.26 104.64 3009.93 \
101.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.27 98.59 3003.13 100.6 3009.96 103.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3164 231.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="3164,233",
		pos="e,3001.6,100.5 3153.9,366.56 3149.5,356.62 3143,339.51 3143,324 3143,324 3143,324 3143,142 3143,114.63 3063.3,104.64 3009.9,101.03"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 3220.9 366.56 3216.46 356.62 3210 339.51 3210 324 3210 324 3210 324 3210 142 3210 121.95 3082.04 108.49 3010.32 \
102.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.55 100.07 3003.37 101.95 3010.15 104.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3228 231.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="3228,233",
		pos="e,3001.9,101.82 3220.9,366.56 3216.5,356.62 3210,339.51 3210,324 3210,324 3210,324 3210,142 3210,121.95 3082,108.49 3010.3,102.51"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 3337.41 366.5 3323.2 357.9 3305 343.15 3305 324 3305 324 3305 324 3305 142 3305 112.66 3104.27 103.04 3010.37 \
100.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.48 97.69 3003.41 99.93 3010.34 102.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3376 231.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="3376,233",
		pos="e,3001.9,99.889 3337.4,366.5 3323.2,357.9 3305,343.15 3305,324 3305,324 3305,324 3305,142 3305,112.66 3104.3,103.04 3010.4,100.14"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 3513.98 366.74 3503.95 357.47 3490 341.45 3490 324 3490 324 3490 324 3490 142 3490 118.03 3139.04 104.55 3009.93 \
100.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.34 97.96 3003.26 100.18 3010.18 102.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3543 231.1 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="3543,233",
		pos="e,3001.8,100.14 3514,366.74 3504,357.47 3490,341.45 3490,324 3490,324 3490,324 3490,142 3490,118.03 3139,104.55 3009.9,100.4"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 3632.63 366.59 3627.89 356.68 3621 339.59 3621 324 3621 324 3621 324 3621 142 3621 111.35 3160.33 101.89 3009.9 \
99.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.25 97.17 3003.22 99.51 3010.18 102.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3646.5 231.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="3646.5,233",
		pos="e,3001.7,99.492 3632.6,366.59 3627.9,356.68 3621,339.59 3621,324 3621,324 3621,324 3621,142 3621,111.35 3160.3,101.89 3009.9,99.613"];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 1640.64 366.58 1624.43 363.65 1605.91 360.48 1589 358 1484.01 342.61 1361.74 333.22 1284.12 328.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1284.47 325.88 1277.33 327.89 1284.16 330.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1561.5 343.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="1561.5,345.5",
		pos="e,1275.8,327.8 1640.6,366.58 1624.4,363.65 1605.9,360.48 1589,358 1484,342.61 1361.7,333.22 1284.1,328.32"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 3712.08 366.66 3706.75 356.81 3699 339.77 3699 324 3699 324 3699 324 3699 142 3699 107.36 3172.6 100.56 3010.16 \
99.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.32 96.83 3003.31 99.23 3010.29 101.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3722.5 231.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="3722.5,233",
		pos="e,3001.8,99.218 3712.1,366.66 3706.8,356.81 3699,339.77 3699,324 3699,324 3699,324 3699,142 3699,107.36 3172.6,100.56 3010.2,99.281"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 3782.63 366.59 3777.89 356.68 3771 339.59 3771 324 3771 324 3771 324 3771 142 3771 103.66 3183.38 99.44 3010.37 \
99.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.49 96.58 3003.49 99.01 3010.48 101.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3788 231.1 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="3788,233",
		pos="e,3002,99.011 3782.6,366.59 3777.9,356.68 3771,339.59 3771,324 3771,324 3771,324 3771,142 3771,103.66 3183.4,99.442 3010.4,99.029"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 1221.03 366.58 1218.51 359.45 1214.83 349.02 1211.74 340.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1214.06 339.48 1209.42 333.69 1209.44 341.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1224.5 343.6 0 19 3 -bam ",
		label=bam,
		lp="1224.5,345.5",
		pos="e,1208.9,332.26 1221,366.58 1218.5,359.45 1214.8,349.02 1211.7,340.27"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 3881.09 366.72 3869.62 357.68 3854 342.06 3854 324 3854 324 3854 324 3854 142 3854 99.36 3194.45 98.26 3010.27 \
98.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.36 96.34 3003.37 98.81 3010.38 101.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3908.5 231.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="3908.5,233",
		pos="e,3001.9,98.813 3881.1,366.72 3869.6,357.68 3854,342.06 3854,324 3854,324 3854,324 3854,142 3854,99.362 3194.5,98.263 3010.3,98.787"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 13 4023.98 366.74 4013.95 357.47 4000 341.45 4000 324 4000 324 4000 324 4000 142 4000 92.55 3828.33 119.41 3779 116 \
3627.95 105.57 3160.43 100.71 3010.08 99.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.43 96.94 3003.41 99.33 3010.39 101.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4046 231.1 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="4046,233",
		pos="e,3001.9,99.313 4024,366.74 4014,357.47 4000,341.45 4000,324 4000,324 4000,324 4000,142 4000,92.55 3828.3,119.41 3779,116 3627.9,\
105.57 3160.4,100.71 3010.1,99.384"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 13 4123.45 366.51 4119.6 356.52 4114 339.35 4114 324 4114 324 4114 324 4114 142 4114 91.23 3937.66 119.36 3887 116 \
3713.9 104.52 3173.88 100.3 3010.38 99.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3010.5 96.82 3003.48 99.23 3010.47 101.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4128 231.1 0 28 7 -alleles ",
		label=alleles,
		lp="4128,233",
		pos="e,3002,99.22 4123.4,366.51 4119.6,356.52 4114,339.35 4114,324 4114,324 4114,324 4114,142 4114,91.226 3937.7,119.36 3887,116 3713.9,\
104.52 3173.9,100.3 3010.4,99.272"];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 415.88 366.53 435.16 358.9 457 345.5 457 324 457 324 457 324 457 142 457 117.1 518.67 106.61 572.47 102.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 572.39 104.66 579.18 101.68 572.01 99.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 468.5 231.1 0 23 6 -fields ",
		label=fields,
		lp="468.5,233",
		pos="e,580.69,101.56 415.88,366.53 435.16,358.9 457,345.5 457,324 457,324 457,324 457,142 457,117.1 518.67,106.61 572.47,102.2"];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1811.96 366.59 1801.33 363.66 1789.17 360.49 1778 358 1511.04 298.54 1442.99 287.95 1172 251 1140.58 246.72 1105.87 \
243.12 1075.63 240.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1075.92 237.92 1068.73 239.74 1075.48 242.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1553.5 298.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="1553.5,300.5",
		pos="e,1067.2,239.6 1812,366.59 1801.3,363.66 1789.2,360.49 1778,358 1511,298.54 1443,287.95 1172,251 1140.6,246.72 1105.9,243.12 1075.6,\
240.36"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 1342.08 366.58 1314.36 357.9 1271.04 344.35 1240.75 334.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1241.81 332.64 1234.4 332.89 1240.35 337.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1330.5 343.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="1330.5,345.5",
		pos="e,1233,332.43 1342.1,366.58 1314.4,357.9 1271,344.35 1240.7,334.87"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 1136.06 319.42 1066.38 316.5 968.89 311.32 963 305 960.27 302.07 960.41 299.04 963 296 964.84 293.84 967.75 291.95 \
971.44 290.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 972.25 292.62 978 287.93 970.58 288.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1015 298.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="1015,300.5",
		pos="e,979.42,287.42 1136.1,319.42 1066.4,316.5 968.89,311.32 963,305 960.27,302.07 960.41,299.04 963,296 964.84,293.84 967.75,291.95 \
971.44,290.3"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1136.22 319.73 1110.52 317.5 1085.38 313.21 1076 305 1073.19 302.54 1071.45 299.09 1070.39 295.49 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1082.5 298.6 0 13 3 -vcf ",
		label=vcf,
		lp="1082.5,300.5",
		pos="e,1069,287.28 1136.2,319.73 1110.5,317.5 1085.4,313.21 1076,305 1073.2,302.54 1071.5,299.09 1070.4,295.49"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 1136.24 317.04 1123.13 314.45 1109.83 310.62 1098 305 1094.59 303.38 1088.64 298.23 1083.01 292.94 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1147 298.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="1147,300.5",
		pos="e,1077.2,287.29 1136.2,317.04 1123.1,314.45 1109.8,310.62 1098,305 1094.6,303.38 1088.6,298.23 1083,292.94"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 798 133.5 798 152.5 860 152.5 860 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 829 140.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="829,143",
		rects="798,133.5,860,152.5",
		width=0.86111];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 4 798.4 134.61 769.63 127.66 726.27 117.18 694.02 109.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 694.93 107.09 687.55 107.83 693.78 111.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 761.5 118.6 0 13 3 -vcf ",
		label=vcf,
		lp="761.5,120.5",
		pos="e,686.08,107.47 798.4,134.61 769.63,127.66 726.27,117.18 694.02,109.39"];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 859.8 139.5 928.39 134.06 1098.95 121.21 1242 116 1581.55 103.64 2676.07 99.82 2916.16 99.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2915.83 101.58 2922.83 99.11 2915.82 96.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1260.5 118.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="1260.5,120.5",
		pos="e,2924.3,99.103 859.8,139.5 928.39,134.06 1098.9,121.21 1242,116 1581.6,103.64 2676.1,99.825 2916.2,99.126"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 819.71 133.82 801.06 117.39 758.89 80.25 735.81 59.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 737.59 58.23 730.72 55.44 734.35 61.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 794.5 96.1 0 13 3 -vcf ",
		label=vcf,
		lp="794.5,98",
		pos="e,729.58,54.438 819.71,133.82 801.06,117.39 758.89,80.25 735.81,59.928"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 662.39 88.58 673.25 80.56 689.74 68.36 702.3 59.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 703.43 61.3 707.6 55.16 700.52 57.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691.5 73.6 0 13 3 -tsv ",
		label=tsv,
		lp="691.5,75.5",
		pos="e,708.82,54.265 662.39,88.578 673.25,80.558 689.74,68.365 702.3,59.079"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 2924.23 95.91 2847.32 93.31 2670.15 85.26 2523 63 2511.28 61.23 2498.69 58.77 2487.08 56.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2487.67 53.9 2480.31 54.79 2486.62 58.69 ",
		pos="e,2478.8,54.467 2924.2,95.905 2847.3,93.315 2670.2,85.26 2523,63 2511.3,61.227 2498.7,58.773 2487.1,56.28"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 2924.38 94.26 2866.43 89.79 2753.66 79.72 2659 63 2648.99 61.23 2638.29 58.87 2628.33 56.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2629.03 54.13 2621.65 54.83 2627.86 58.89 ",
		pos="e,2620.2,54.47 2924.4,94.26 2866.4,89.792 2753.7,79.718 2659,63 2649,61.233 2638.3,58.875 2628.3,56.479"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 2924.18 89.8 2889.46 83.24 2837.21 73.06 2792 63 2782.96 60.99 2773.3 58.7 2764.15 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2764.77 54.09 2757.39 54.8 2763.6 58.85 ",
		pos="e,2755.9,54.433 2924.2,89.801 2889.5,83.238 2837.2,73.058 2792,63 2783,60.99 2773.3,58.697 2764.1,56.461"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 4 2943.84 88.58 2924.79 80.2 2895.37 67.27 2873.96 57.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2874.96 55.62 2867.57 55.04 2872.99 60.1 ",
		pos="e,2866.2,54.434 2943.8,88.578 2924.8,80.199 2895.4,67.267 2874,57.853"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 4 2963 88.58 2963 81.52 2963 71.24 2963 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2965.45 62.78 2963 55.78 2960.55 62.78 ",
		pos="e,2963,54.265 2963,88.578 2963,81.523 2963,71.24 2963,62.547"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 4 2984.14 88.58 3005.44 80.09 3038.48 66.92 3062.18 57.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3062.83 59.86 3068.43 54.99 3061.02 55.31 ",
		pos="e,3069.8,54.434 2984.1,88.578 3005.4,80.089 3038.5,66.925 3062.2,57.482"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 7 3001.82 91.05 3041.47 84.78 3104.73 74.28 3159 63 3168.38 61.05 3178.4 58.75 3187.86 56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3188.29 58.89 3194.52 54.85 3187.13 54.13 ",
		pos="e,3196,54.495 3001.8,91.046 3041.5,84.783 3104.7,74.284 3159,63 3168.4,61.051 3178.4,58.747 3187.9,56.474"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 7 3001.88 94.39 3064.21 89.91 3190.22 79.59 3296 63 3307.74 61.16 3320.35 58.7 3332.01 56.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3332.51 58.64 3338.83 54.76 3331.47 53.85 ",
		pos="e,3340.3,54.443 3001.9,94.394 3064.2,89.912 3190.2,79.59 3296,63 3307.7,61.159 3320.4,58.705 3332,56.235"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 7 2924.15 97.42 2828.9 97.87 2576.4 95.61 2369 63 2358.39 61.33 2347.02 58.94 2336.53 56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2337.19 54.11 2329.81 54.85 2336.04 58.87 ",
		pos="e,2328.3,54.492 2924.1,97.417 2828.9,97.869 2576.4,95.606 2369,63 2358.4,61.332 2347,58.939 2336.5,56.473"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 799.05 178.67 790.67 159.64 773.77 112.69 798 88 824.02 61.49 2098.47 69.76 2135 63 2141.72 61.76 2148.75 59.67 \
2155.27 57.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2156.08 59.69 2161.77 54.94 2154.36 55.1 ",
		pos="e,2163.2,54.408 799.05,178.67 790.67,159.64 773.77,112.69 798,88 824.02,61.49 2098.5,69.755 2135,63 2141.7,61.757 2148.8,59.67 2155.3,\
57.376"];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 808.01 178.71 811.32 173.24 815.76 165.9 819.7 159.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 821.69 160.82 823.22 153.56 817.5 158.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 824.5 163.6 0 13 3 -vcf ",
		label=vcf,
		lp="824.5,165.5",
		pos="e,824,152.27 808.01,178.71 811.32,173.24 815.76,165.9 819.7,159.38"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1054.58 268.5 1043.98 262.26 1029.4 253.68 1017.44 246.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1018.97 244.69 1011.7 243.25 1016.48 248.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1045.5 253.6 0 13 3 -vcf ",
		label=vcf,
		lp="1045.5,255.5",
		pos="e,1010.4,242.48 1054.6,268.5 1044,262.26 1029.4,253.68 1017.4,246.63"];
	add_vep_fields_to_table -> annotated_tsv;
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 957.87 223.5 926.68 216.56 882.45 206.7 849.24 199.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 849.89 196.94 842.53 197.81 848.83 201.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 922.5 208.6 0 13 3 -vcf ",
		label=vcf,
		lp="922.5,210.5",
		pos="e,841.05,197.48 957.87,223.5 926.68,216.56 882.45,206.7 849.24,199.3"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 773 223.5 773 242.5 845 242.5 845 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 809 230.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="809,233",
		rects="773,223.5,845,242.5",
		width=1];
	default1 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 807.84 223.71 807.13 218.59 806.19 211.85 805.33 205.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 807.76 205.36 804.36 198.76 802.9 206.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 826.5 208.6 0 41 9 -data_type ",
		label=data_type,
		lp="826.5,210.5",
		pos="e,804.15,197.27 807.84,223.71 807.13,218.59 806.19,211.85 805.33,205.67"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 874.5 313.5 874.5 332.5 921.5 332.5 921.5 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 898 320.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="898,323",
		rects="874.5,313.5,921.5,332.5",
		width=0.65278];
	default2 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 896.86 313.54 896.6 307.77 897.36 300.4 902 296 904.38 293.74 925.8 290.96 952.56 288.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.78 290.75 959.51 287.64 952.31 285.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 922.5 298.6 0 41 9 -data_type ",
		label=data_type,
		lp="922.5,300.5",
		pos="e,961.02,287.49 896.86,313.54 896.6,307.77 897.36,300.4 902,296 904.38,293.74 925.8,290.96 952.56,288.31"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 883 268.5 883 287.5 933 287.5 933 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 908 275.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="908,278",
		rects="883,268.5,933,287.5",
		width=0.69444];
	default3 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 903.76 268.85 901.49 263.23 899.91 255.91 904 251 906.41 248.1 910.97 245.7 916.82 243.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 917.36 246.1 923.4 241.8 916 241.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 924.5 253.6 0 41 9 -data_type ",
		label=data_type,
		lp="924.5,255.5",
		pos="e,924.86,241.38 903.76,268.85 901.49,263.23 899.91,255.91 904,251 906.41,248.1 910.97,245.7 916.82,243.7"];
}