digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 436 593 436 0 ",
		bb="0,0,436,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 530 24 585 415 585 415 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 573 0 84 15 -Workflow Inputs ",
			bb="24,530,415,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 538.5 32.5 557.5 95.5 557.5 95.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 64 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="64,548",
			rects="32.5,538.5,95.5,557.5",
			width=0.875];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 538.5 333.5 557.5 406.5 557.5 406.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 545.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="370,548",
			rects="333.5,538.5,406.5,557.5",
			width=1.0139];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 260.5 538.5 260.5 557.5 329.5 557.5 329.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 295 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="295,548",
			rects="260.5,538.5,329.5,557.5",
			width=0.95833];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 100 538.5 100 557.5 174 557.5 174 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 137 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="137,548",
			rects="100,538.5,174,557.5",
			width=1.0278];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 178 538.5 178 557.5 256 557.5 256 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 217 545.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="217,548",
			rects="178,538.5,256,557.5",
			width=1.0833];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 15 8 15 63 190 63 190 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 69 15 0 92 16 -Workflow Outputs ",
			bb="15,8,190,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="69,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 23.5 35.5 23.5 54.5 94.5 54.5 94.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="59,45",
			rects="23.5,35.5,94.5,54.5",
			width=0.98611];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 98.5 35.5 98.5 54.5 181.5 54.5 181.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 140 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="140,45",
			rects="98.5,35.5,181.5,54.5",
			width=1.1528];
	}
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 107.5 350.5 107.5 369.5 236.5 369.5 236.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 172 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="172,360",
		rects="107.5,350.5,236.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 10 61.02 538.53 54.87 519.48 42.8 472.4 61 440 83.17 400.53 112.97 415.69 148 387 152.14 383.61 156.24 379.51 159.85 \
375.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.6 377.31 164.38 370.43 157.92 374.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 81 448.1 0 40 9 -reference ",
		label=reference,
		lp="81,450",
		pos="e,165.38,369.29 61.019,538.53 54.867,519.48 42.797,472.4 61,440 83.175,400.53 112.97,415.69 148,387 152.14,383.61 156.24,379.51 \
159.85,375.59"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 49.5 80.5 49.5 99.5 150.5 99.5 150.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="100,90",
		rects="49.5,80.5,150.5,99.5",
		width=1.4028];
	reference -> filter	[_draw_="c 7 -#000000 B 10 39.44 538.66 21.39 530.79 0 517.03 0 496 0 496 0 496 0 134 0 112.54 19.68 101.66 41.57 96.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 41.91 98.62 48.23 94.74 40.87 93.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 20 313.1 0 40 9 -reference ",
		label=reference,
		lp="20,315",
		pos="e,49.707,94.413 39.439,538.66 21.391,530.79 0,517.03 0,496 0,496 0,496 0,134 0,112.54 19.676,101.66 41.572,96.192"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 29.5 215.5 29.5 234.5 170.5 234.5 170.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="100,225",
		rects="29.5,215.5,170.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 59.35 538.62 54.32 528.74 47 511.68 47 496 47 496 47 496 47 269 47 255.36 57.72 245.29 69.51 238.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 70.54 240.57 75.57 235.12 68.24 236.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 67 380.6 0 40 9 -reference ",
		label=reference,
		lp="67,382.5",
		pos="e,76.908,234.41 59.355,538.62 54.321,528.74 47,511.68 47,496 47,496 47,496 47,269 47,255.36 57.716,245.29 69.51,238.34"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 154.5 440.5 154.5 459.5 287.5 459.5 287.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 221 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="221,450",
		rects="154.5,440.5,287.5,459.5",
		width=1.8472];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 63.78 538.87 63.88 525.64 66.11 499.46 81 485 91.67 474.64 122.61 466.57 152.71 460.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 152.8 463.37 159.25 459.71 151.93 458.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 101 493.1 0 40 9 -reference ",
		label=reference,
		lp="101,495",
		pos="e,160.74,459.44 63.777,538.87 63.881,525.64 66.107,499.46 81,485 91.666,474.64 122.61,466.57 152.71,460.9"];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 385.39 538.66 399.1 529.99 417 515.02 417 496 417 496 417 496 417 134 417 108.22 250.19 97.21 158.58 93.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.84 90.67 151.74 92.82 158.63 95.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 313.1 0 19 3 -bam ",
		label=bam,
		lp="426.5,315",
		pos="e,150.23,92.75 385.39,538.66 399.1,529.99 417,515.02 417,496 417,496 417,496 417,134 417,108.22 250.19,97.212 158.58,93.114"];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 369.99 538.5 369.51 525.22 366.6 499.57 352 485 336.95 469.98 316.17 461.33 295.6 456.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 296.27 454.06 288.91 454.98 295.23 458.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 386 493.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="386,495",
		pos="e,287.43,454.66 369.99,538.5 369.51,525.22 366.6,499.57 352,485 336.95,469.98 316.17,461.33 295.6,456.43"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 299.15 538.57 304.77 525.83 312.91 501.42 302 485 295.21 474.78 284.69 467.63 273.45 462.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 274.41 460.37 267 460.05 272.6 464.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 329 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="329,495",
		pos="e,265.6,459.49 299.15,538.57 304.77,525.83 312.91,501.42 302,485 295.21,474.78 284.69,467.63 273.45,462.62"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 13 133.8 538.75 130.66 530.37 125.92 516.95 123 505 107.59 442.05 100 425.81 100 361 100 361 100 361 100 269 100 \
260.31 100 250.63 100 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 242.76 100 235.76 97.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 124.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="124.5,382.5",
		pos="e,100,234.24 133.8,538.75 130.66,530.37 125.92,516.95 123,505 107.59,442.05 100,425.81 100,361 100,361 100,361 100,269 100,260.31 \
100,250.63 100,242.65"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123 485.5 123 504.5 245 504.5 245 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 184 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="184,495",
		rects="123,485.5,245,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 144.76 538.58 151.81 530.93 162.36 519.48 170.74 510.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.42 512.19 175.36 505.38 168.81 508.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="190.5,517.5",
		pos="e,176.38,504.26 144.76,538.58 151.81,530.93 162.36,519.48 170.74,510.39"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 10 224.56 538.74 231.33 530.76 240.81 518.01 245 505 250.05 489.34 253.7 482.54 246 468 245.49 467.03 244.9 466.11 \
244.24 465.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 246 463.53 239.27 460.41 242.58 467.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 275.5 493.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="275.5,495",
		pos="e,238.19,459.35 224.56,538.74 231.33,530.76 240.81,518.01 245,505 250.05,489.34 253.7,482.54 246,468 245.49,467.03 244.9,466.11 \
244.24,465.24"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 123.5 305.5 123.5 324.5 188.5 324.5 188.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 156 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="156,315",
		rects="123.5,305.5,188.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 168.92 350.71 166.97 345.47 164.38 338.53 162.04 332.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 164.34 331.39 159.6 325.68 159.75 333.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 171.5 335.6 0 13 4 -file ",
		label=file,
		lp="171.5,337.5",
		pos="e,159.08,324.27 168.92,350.71 166.97,345.47 164.38,338.53 162.04,332.24"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 92.09 80.71 86.54 74.88 78.96 66.93 72.46 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 74.53 58.74 67.93 55.36 70.98 62.12 ",
		pos="e,66.881,54.265 92.095,80.709 86.536,74.879 78.961,66.934 72.46,60.117"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 107.71 80.71 113.14 74.88 120.53 66.93 126.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 128.31 62.17 131.28 55.37 124.72 58.83 ",
		pos="e,132.31,54.265 107.71,80.709 113.14,74.879 120.53,66.934 126.87,60.117"];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 69 125.5 69 144.5 131 144.5 131 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="100,135",
		rects="69,125.5,131,144.5",
		width=0.86111];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 100 125.71 100 120.59 100 113.85 100 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 107.78 100 100.78 97.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,112.5",
		pos="e,100,99.265 100,125.71 100,120.59 100,113.85 100,107.67"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 35.5 170.5 35.5 189.5 164.5 189.5 164.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 100 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="100,180",
		rects="35.5,170.5,164.5,189.5",
		width=1.7917];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 100 215.71 100 210.59 100 203.85 100 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 197.78 100 190.78 97.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,202.5",
		pos="e,100,189.27 100,215.71 100,210.59 100,203.85 100,197.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 116 260.5 116 279.5 178 279.5 178 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 147 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="147,270",
		rects="116,260.5,178,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 154.26 305.71 153.17 300.47 151.72 293.53 150.4 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 152.87 287.1 149.04 280.75 148.08 288.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 158.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="158.5,292.5",
		pos="e,148.73,279.27 154.26,305.71 153.17,300.47 151.72,293.53 150.4,287.24"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 7 186.17 485.59 187.89 480.13 190.73 473.12 195 468 196.04 466.76 197.19 465.57 198.41 464.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 199.74 466.52 203.76 460.29 196.73 462.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 222 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="222,472.5",
		pos="e,204.95,459.36 186.17,485.59 187.89,480.13 190.73,473.12 195,468 196.04,466.76 197.19,465.57 198.41,464.45"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 183.5 395.5 183.5 414.5 232.5 414.5 232.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 208 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="208,405",
		rects="183.5,395.5,232.5,414.5",
		width=0.68056];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 218.49 440.71 216.91 435.47 214.81 428.53 212.91 422.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 215.31 421.71 210.94 415.71 210.62 423.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 267.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="267.5,427.5",
		pos="e,210.5,414.27 218.49,440.71 216.91,435.47 214.81,428.53 212.91,422.24"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 137.94 260.71 131.44 254.76 122.53 246.61 114.98 239.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 116.97 238.2 110.15 235.29 113.66 241.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 133.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="133.5,247.5",
		pos="e,109.03,234.27 137.94,260.71 131.44,254.76 122.53,246.61 114.98,239.7"];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 100 170.71 100 165.59 100 158.85 100 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 102.45 152.78 100 145.78 97.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 106.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="106.5,157.5",
		pos="e,100,144.27 100,170.71 100,165.59 100,158.85 100,152.67"];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 4 201.06 395.71 196.28 390 189.8 382.26 184.17 375.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 186.26 374.22 179.89 370.43 182.51 377.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="242,382.5",
		pos="e,178.92,369.27 201.06,395.71 196.28,390 189.8,382.26 184.17,375.54"];
}