digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 837 233 837 0 ",
		bb="0,0,837,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 33 170 33 225 728 225 728 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 83 213 0 84 15 -Workflow Inputs ",
			bb="33,170,728,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="83,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 41.5 178.5 41.5 197.5 134.5 197.5 134.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 88 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="88,188",
			rects="41.5,178.5,134.5,197.5",
			width=1.2917];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 320.5 178.5 320.5 197.5 377.5 197.5 377.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 349 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
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			label=diagram,
			pos="349,188",
			rects="320.5,178.5,377.5,197.5",
			width=0.79167];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 139 178.5 139 197.5 239 197.5 239 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 189 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="189,188",
			rects="139,178.5,239,197.5",
			width=1.3889];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 382 178.5 382 197.5 468 197.5 468 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 425 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
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			label=reference_cnn,
			pos="425,188",
			rects="382,178.5,468,197.5",
			width=1.1944];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 472 178.5 472 197.5 546 197.5 546 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 509 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="509,188",
			rects="472,178.5,546,197.5",
			width=1.0278];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 243.5 178.5 243.5 197.5 316.5 197.5 316.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 280 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="280,188",
			rects="243.5,178.5,316.5,197.5",
			width=1.0139];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 550 178.5 550 197.5 604 197.5 604 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 577 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
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			label=method,
			pos="577,188",
			rects="550,178.5,604,197.5",
			width=0.75];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 608.5 178.5 608.5 197.5 719.5 197.5 719.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 664 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="664,188",
			rects="608.5,178.5,719.5,197.5",
			width=1.5417];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 218.5 54.5 218.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="153,45",
			rects="87.5,35.5,218.5,54.5",
			width=1.8194];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 222.5 35.5 222.5 54.5 371.5 54.5 371.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="297,45",
			rects="222.5,35.5,371.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 376 35.5 376 54.5 450 54.5 450 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 413 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="413,45",
			rects="376,35.5,450,54.5",
			width=1.0278];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454 35.5 454 54.5 582 54.5 582 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 518 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="518,45",
			rects="454,35.5,582,54.5",
			width=1.7778];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 586.5 35.5 586.5 54.5 725.5 54.5 725.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 656 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="656,45",
			rects="586.5,35.5,725.5,54.5",
			width=1.9306];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 729.5 35.5 729.5 54.5 820.5 54.5 820.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 775 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="775,45",
			rects="729.5,35.5,820.5,54.5",
			width=1.2639];
	}
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 63.5 80.5 63.5 99.5 358.5 99.5 358.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 211 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="211,90",
		rects="63.5,80.5,358.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 92.15 178.68 99.02 165.65 113.93 140.33 133 125 145.13 115.25 160.48 107.77 174.35 102.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 175.19 104.64 180.89 99.91 173.48 100.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="165,135",
		pos="e,182.31,99.378 92.15,178.68 99.023,165.65 113.93,140.33 133,125 145.13,115.25 160.48,107.77 174.35,102.34"];
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 374.5 125.5 374.5 144.5 451.5 144.5 451.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 413 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="413,135",
		rects="374.5,125.5,451.5,144.5",
		width=1.0694];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 110.16 178.56 118.76 175.53 128.74 172.29 138 170 184.74 158.43 197.25 159.2 245 153 285.87 147.69 332.52 143.09 \
366.27 140.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.3 142.47 373.06 139.4 365.86 137.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 277 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="277,157.5",
		pos="e,374.56,139.26 110.16,178.56 118.76,175.53 128.74,172.29 138,170 184.74,158.43 197.25,159.2 245,153 285.87,147.69 332.52,143.09 \
366.27,140.01"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 355.74 178.76 362.03 171.42 371.92 160.68 382 153 383.92 151.54 385.99 150.12 388.1 148.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.29 150.92 394.07 145.25 386.8 146.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 399 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="399,157.5",
		pos="e,395.38,144.48 355.74,178.76 362.03,171.42 371.92,160.68 382,153 383.92,151.54 385.99,150.12 388.1,148.77"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 190.88 178.82 194.48 163.09 202.43 128.4 207.19 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 209.55 108.28 208.73 100.91 204.78 107.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="229.5,135",
		pos="e,209.07,99.438 190.88,178.82 194.48,163.09 202.43,128.4 207.19,107.63"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 4 423.02 178.58 421.36 171.52 418.94 161.24 416.89 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 419.28 151.99 415.29 145.74 414.51 153.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 448.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="448.5,157.5",
		pos="e,414.94,144.26 423.02,178.58 421.36,171.52 418.94,161.24 416.89,152.55"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 503.84 178.73 498.55 170.93 489.6 159.5 479 153 472.98 149.31 466.18 146.42 459.3 144.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 460.07 141.82 452.67 142.19 458.69 146.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 513.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="513.5,157.5",
		pos="e,451.21,141.77 503.84,178.73 498.55,170.93 489.6,159.5 479,153 472.98,149.31 466.18,146.42 459.3,144.15"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 278.49 178.64 275.88 165.99 269.56 141.7 257 125 250.72 116.65 241.84 109.42 233.55 103.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 234.99 101.82 227.77 100.11 232.35 105.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 290 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="290,135",
		pos="e,226.5,99.293 278.49,178.64 275.88,165.99 269.56,141.7 257,125 250.72,116.65 241.84,109.42 233.55,103.8"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 288.52 178.63 297.04 170.77 310.87 159.29 325 153 337.83 147.29 352.55 143.49 366.24 140.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.61 143.39 373.11 139.81 365.8 138.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 348 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="348,157.5",
		pos="e,374.6,139.55 288.52,178.63 297.04,170.77 310.87,159.29 325,153 337.83,147.29 352.55,143.49 366.24,140.97"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 570.4 178.74 563.49 170.73 551.86 158.93 539 153 514.34 141.63 484.3 137.26 459.73 135.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.9 133.35 452.79 135.46 459.67 138.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 569 155.6 0 32 6 -method ",
		label=method,
		lp="569,157.5",
		pos="e,451.28,135.39 570.4,178.74 563.49,170.73 551.86,158.93 539,153 514.34,141.63 484.3,137.26 459.73,135.79"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 648.68 178.6 633.32 170.6 608.73 158.91 586 153 544.09 142.1 494.81 138.08 459.59 136.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.99 134.21 452.91 136.41 459.82 139.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 651.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="651.5,157.5",
		pos="e,451.4,136.35 648.68,178.6 633.32,170.6 608.73,158.91 586,153 544.09,142.1 494.81,138.08 459.59,136.65"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 157.82 80.56 135.63 76.34 109.77 70.51 87 63 82.64 61.56 78.1 59.76 73.77 57.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.02 55.74 67.63 55.06 72.98 60.2 ",
		pos="e,66.258,54.426 157.82,80.557 135.63,76.341 109.77,70.512 87,63 82.636,61.56 78.103,59.756 73.768,57.864"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 10 407.79 125.73 399.53 113.41 382.19 90.59 361 80 305.72 52.38 283.79 74.09 223 63 213.1 61.19 202.51 58.84 192.64 \
56.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 193.4 54.13 186.01 54.84 192.23 58.89 ",
		pos="e,184.54,54.482 407.79,125.73 399.53,113.41 382.19,90.588 361,80 305.72,52.376 283.79,74.088 223,63 213.1,61.194 202.51,58.844 192.64,\
56.47"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 412.22 125.72 410.49 112.25 405.13 85.62 389 71 382.89 65.46 367.58 60.45 351.17 56.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 351.92 54.04 344.54 54.82 350.79 58.81 ",
		pos="e,343.07,54.47 412.22,125.72 410.49,112.25 405.13,85.616 389,71 382.89,65.461 367.58,60.445 351.17,56.385"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 413 125.56 413 111.14 413 81.48 413 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 415.45 62.8 413 55.8 410.55 62.8 ",
		pos="e,413,54.284 413,125.56 413,111.14 413,81.476 413,62.727"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 423.07 125.56 441.22 110.35 479.6 78.18 501.6 59.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.16 61.63 506.96 55.26 500.02 57.87 ",
		pos="e,508.12,54.284 423.07,125.56 441.22,110.35 479.6,78.18 501.6,59.747"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 436.3 125.56 480.3 109.63 575.61 75.11 624.97 57.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 625.6 59.61 631.35 54.93 623.93 55.01 ",
		pos="e,632.77,54.412 436.3,125.56 480.3,109.63 575.61,75.112 624.97,57.237"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 451.41 126.72 510.79 115.14 628.23 90.96 726 63 731.95 61.3 738.24 59.28 744.26 57.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 744.99 59.59 750.8 54.98 743.39 54.96 ",
		pos="e,752.23,54.487 451.41,126.72 510.79,115.14 628.23,90.956 726,63 731.95,61.298 738.24,59.284 744.26,57.249"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 374.51 129.32 353.05 126.41 325.9 122.22 302 117 296.47 115.79 270.54 108.36 247.77 101.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 248.74 99.48 241.34 99.87 247.37 104.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="317.5,112.5",
		pos="e,239.88,99.45 374.51,129.32 353.05,126.41 325.9,122.22 302,117 296.47,115.79 270.54,108.36 247.77,101.74"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 378.95 125.57 369.8 123.06 359.96 120.13 351 117 341.41 113.65 339.78 110.74 330 108 320.17 105.24 309.75 102.92 \
299.33 100.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.79 98.56 292.47 99.74 298.93 103.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 366 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="366,112.5",
		pos="e,290.98,99.473 378.95,125.57 369.8,123.06 359.96,120.13 351,117 341.41,113.65 339.78,110.74 330,108 320.17,105.24 309.75,102.92 \
299.33,100.96"];
}