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			rects="321.5,35.5,392.5,54.5",
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		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 521.5 35.5 521.5 54.5 630.5 54.5 630.5 35.5 ",
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			width=1.5139];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 476.5 35.5 476.5 54.5 517.5 54.5 517.5 35.5 ",
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	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 67 125.5 67 144.5 449 144.5 449 125.5 ",
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		pos="258,135",
		rects="67,125.5,449,144.5",
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	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 174.05 313.71 175.24 303.63 177 286.1 177 271 177 271 177 271 177 179 177 163.68 188.44 153.8 202.73 147.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 203.38 149.81 209 144.97 201.59 145.25 ",
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		label=assay_non_cpg_sites,
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		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 397 177.5 0 67 14 -Biscuit pileup ",
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		label="Biscuit pileup",
		pos="397,180",
		rects="355.5,170.5,438.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 10 289.46 313.71 300.48 297.64 326.98 262.15 358 243 368.65 236.43 376.46 244.15 385 235 394.4 224.93 397.03 209.19 \
397.53 197.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 399.98 197.64 397.57 190.62 395.08 197.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 378 245.6 0 40 9 -reference ",
		label=reference,
		lp="378,247.5",
		pos="e,397.57,189.11 289.46,313.71 300.48,297.64 326.98,262.15 358,243 368.65,236.43 376.46,244.15 385,235 394.4,224.93 397.03,209.19 \
397.53,197.3"];
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 516.5 260.5 516.5 279.5 759.5 279.5 759.5 260.5 ",
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		pos="638,270",
		rects="516.5,260.5,759.5,279.5",
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	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 306.5 313.53 315.56 310.42 326.16 307.14 336 305 367.03 298.25 378.81 311.61 407 297 411.75 294.54 410.2 290.38 \
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	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 281.9 313.76 279.53 303.73 276 286.24 276 271 276 271 276 271 276 179 276 169.51 272.22 159.69 268.13 151.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.26 150.62 264.65 145.77 266.01 153.06 ",
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		label=reference,
		lp="296,225",
		pos="e,263.89,144.46 281.9,313.76 279.53,303.73 276,286.24 276,271 276,271 276,271 276,179 276,169.51 272.22,159.69 268.13,151.84"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 443 170.5 443 189.5 583 189.5 583 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 513 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="513,180",
		rects="443,170.5,583,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 312.17 313.54 323.98 309.4 337.59 303.83 349 297 406.88 262.39 405.55 231.65 464 198 467.48 196 471.22 194.18 \
475.05 192.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 475.91 194.83 481.52 189.98 474.11 190.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 429 245.6 0 40 9 -reference ",
		label=reference,
		lp="429,247.5",
		pos="e,482.93,189.42 312.17,313.54 323.98,309.4 337.59,303.83 349,297 406.88,262.39 405.55,231.65 464,198 467.48,196 471.22,194.18 475.05,\
192.54"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 539.5 125.5 539.5 144.5 640.5 144.5 640.5 125.5 ",
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		fillcolor="#F3CEA1",
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		label="Bisulfite QC tools",
		pos="590,135",
		rects="539.5,125.5,640.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 306.71 313.66 324.06 305.66 345 291.71 345 271 345 271 345 271 345 179 345 138.16 478.12 149.88 531.56 145.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 531.52 147.83 538.2 144.61 530.97 142.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 365 223.1 0 40 9 -reference ",
		label=reference,
		lp="365,225",
		pos="e,539.71,144.44 306.71,313.66 324.06,305.66 345,291.71 345,271 345,271 345,271 345,179 345,138.16 478.12,149.88 531.56,145.36"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 911.61 313.52 882.2 305.85 836.9 294.75 797 288 779.67 285.07 761.19 282.55 743.19 280.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 743.69 278 736.46 279.63 743.13 282.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 873 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="873,292.5",
		pos="e,734.95,279.46 911.61,313.52 882.2,305.85 836.9,294.75 797,288 779.67,285.07 761.19,282.55 743.19,280.41"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1051.65 313.53 1040.17 310.6 1027.05 307.44 1015 305 933.6 288.51 840.69 280.02 767.47 275.64 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 973.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="973.5,292.5",
		pos="e,759.1,275.15 1051.6,313.53 1040.2,310.6 1027,307.44 1015,305 933.6,288.51 840.69,280.02 767.47,275.64"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1279.82 313.59 1267.28 310.4 1252.53 307.06 1239 305 1077.78 280.5 889.81 273.24 767.6 271.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 767.83 268.85 760.79 271.2 767.75 273.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1202.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1202.5,292.5",
		pos="e,759.28,271.17 1279.8,313.59 1267.3,310.4 1252.5,307.06 1239,305 1077.8,280.5 889.81,273.24 767.6,271.3"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 445.09 313.5 457.24 309.54 470.77 304.11 482 297 486.78 293.98 485.91 290.46 491 288 496.82 285.19 506.02 282.83 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 517.4 283.27 523.9 279.71 516.6 278.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 527 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="527,292.5",
		pos="e,525.4,279.47 445.09,313.5 457.24,309.54 470.77,304.11 482,297 486.78,293.98 485.91,290.46 491,288 496.82,285.19 506.02,282.83 \
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	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 174 80.5 174 99.5 342 99.5 342 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 258 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="258,90",
		rects="174,80.5,342,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 62.21 313.71 61.32 303.62 60 286.08 60 271 60 271 60 271 60 134 60 110.46 114.12 99.78 165.77 94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 165.76 97.41 172.52 94.36 165.33 92.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 92.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="92.5,202.5",
		pos="e,174.03,94.223 62.212,313.71 61.323,303.62 60,286.08 60,271 60,271 60,271 60,134 60,110.46 114.12,99.781 165.77,94.949"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 544.51 313.6 552.72 305.93 565.8 294.79 579 288 583.25 285.81 587.82 283.87 592.47 282.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 593.06 284.55 598.9 279.97 591.48 279.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 608 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="608,292.5",
		pos="e,600.33,279.48 544.51,313.6 552.72,305.93 565.8,294.79 579,288 583.25,285.81 587.82,283.87 592.47,282.16"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 638 313.58 638 306.52 638 296.24 638 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 640.45 287.78 638 280.78 635.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 656.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="656.5,292.5",
		pos="e,638,279.26 638,313.58 638,306.52 638,296.24 638,287.55"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 758.22 313.58 734.04 305.01 696.43 291.7 669.73 282.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 670.66 279.97 663.24 279.94 669.02 284.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 753 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="753,292.5",
		pos="e,661.81,279.43 758.22,313.58 734.04,305.01 696.43,291.7 669.73,282.24"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1404.35 313.53 1377.99 301.26 1333 279.13 1333 271 1333 271 1333 271 1333 179 1333 144.79 824.51 137.76 648.84 \
136.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 649.02 133.9 642 136.29 648.98 138.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1361.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1361.5,225",
		pos="e,640.49,136.28 1404.4,313.53 1378,301.26 1333,279.13 1333,271 1333,271 1333,271 1333,179 1333,144.79 824.51,137.76 648.84,136.34"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 418.55 170.53 429.61 165 442.17 156.63 449 145 464.05 119.38 462 83.34 459.06 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 461.52 62.43 457.99 55.91 456.68 63.21 ",
		pos="e,457.75,54.413 418.55,170.53 429.61,165 442.17,156.63 449,145 464.05,119.38 462,83.342 459.06,62.556"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 369.54 170.5 347.74 163.76 317.1 154.28 293.45 146.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 294.26 144.65 286.85 144.93 292.81 149.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 345.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="345.5,157.5",
		pos="e,285.4,144.48 369.54,170.5 347.74,163.76 317.1,154.28 293.45,146.97"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 435.13 170.5 466.32 163.56 510.55 153.7 543.76 146.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 544.17 148.72 550.47 144.81 543.11 143.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 516.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="516.5,157.5",
		pos="e,551.95,144.48 435.13,170.5 466.32,163.56 510.55,153.7 543.76,146.3"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 463.5 80.5 463.5 99.5 582.5 99.5 582.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 523 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="523,90",
		rects="463.5,80.5,582.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 517.99 80.71 514.68 75.24 510.24 67.9 506.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 508.5 60.28 502.78 55.56 504.31 62.82 ",
		pos="e,502,54.265 517.99,80.709 514.68,75.236 510.24,67.899 506.3,61.381"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 510 215.5 510 234.5 620 234.5 620 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 565 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="565,225",
		rects="510,215.5,620,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 623.58 260.5 612.98 254.26 598.4 245.68 586.44 238.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 587.97 236.69 580.7 235.25 585.48 240.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 619.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="619.5,247.5",
		pos="e,579.39,234.48 623.58,260.5 612.98,254.26 598.4,245.68 586.44,238.63"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 331.51 125.64 338.66 123.38 345.62 120.55 352 117 376.14 103.56 395.95 77.57 406.85 61.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 408.71 62.68 410.41 55.46 404.58 60.05 ",
		pos="e,411.22,54.187 331.51,125.64 338.66,123.38 345.62,120.55 352,117 376.14,103.56 395.95,77.568 406.85,61.038"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 258 125.71 258 120.59 258 113.85 258 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 260.45 107.78 258 100.78 255.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 304.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="304.5,112.5",
		pos="e,258,99.265 258,125.71 258,120.59 258,113.85 258,107.67"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 513.36 170.56 513.88 159.91 515 141.04 517 125 517.72 119.22 518.76 112.94 519.77 107.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 522.11 108.17 521 100.84 517.29 107.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 527.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="527.5,135",
		pos="e,521.28,99.348 513.36,170.56 513.88,159.91 515,141.04 517,125 517.72,119.22 518.76,112.94 519.77,107.36"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 531.81 215.5 505 208.64 467.14 198.95 438.36 191.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.98 189.22 431.59 189.85 437.76 193.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 505.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="505.5,202.5",
		pos="e,430.12,189.48 531.81,215.5 505,208.64 467.14,198.95 438.36,191.59"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 554.73 215.5 547.6 209.62 537.96 201.64 529.74 194.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 531.37 193.02 524.42 190.44 528.25 196.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 552.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="552.5,202.5",
		pos="e,523.25,189.48 554.73,215.5 547.6,209.62 537.96,201.64 529.74,194.84"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 570.48 215.71 574.61 209.04 580.04 199.29 583 190 586.86 177.88 588.59 163.58 589.37 152.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 591.82 152.88 589.76 145.76 586.92 152.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 596.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="596.5,180",
		pos="e,589.84,144.25 570.48,215.71 574.61,209.04 580.04,199.29 583,190 586.86,177.88 588.59,163.58 589.37,152.74"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 589.1 125.55 587.92 114.9 585.69 96.04 583 80 582.03 74.23 580.79 67.94 579.62 62.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 582.09 62.16 578.22 55.83 577.3 63.19 ",
		pos="e,577.9,54.351 589.1,125.55 587.92,114.9 585.69,96.036 583,80 582.03,74.227 580.79,67.941 579.62,62.361"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 277.56 80.5 292.47 74.03 313.2 65.02 329.74 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 330.65 60.12 336.09 55.08 328.7 55.62 ",
		pos="e,337.48,54.478 277.56,80.505 292.47,74.026 313.2,65.024 329.74,57.84"];
}