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	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3142 125.5 3142 144.5 3220 144.5 3220 125.5 ",
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		height=0.27778,
		label="run pVACseq",
		pos="3181,135",
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		width=1.0833];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 3694.35 403.62 3689.32 393.74 3682 376.68 3682 361 3682 361 3682 361 3682 179 3682 156.36 3352.9 142.17 3228.16 \
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		label=alleles,
		lp="3696,270",
		pos="e,3219.9,137.31 3694.4,403.62 3689.3,393.74 3682,376.68 3682,361 3682,361 3682,361 3682,179 3682,156.36 3352.9,142.17 3228.2,137.61"];
	run_reference_proteome_similarity -> pvacseq	[_draw_="c 7 -#000000 B 10 3798.56 403.6 3781 395.64 3760 381.77 3760 361 3760 361 3760 361 3760 179 3760 152.4 3366.36 140.43 3228.22 137.05 ",
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		label=run_reference_proteome_similarity,
		lp="3831,270",
		pos="e,3219.9,136.85 3798.6,403.6 3781,395.64 3760,381.77 3760,361 3760,361 3760,361 3760,179 3760,152.4 3366.4,140.43 3228.2,137.05"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 3948.9 403.59 3941.51 393.95 3931 377.37 3931 361 3931 361 3931 361 3931 179 3931 143.64 3392.76 137.33 3228.21 \
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		label=normal_vaf,
		lp="3954,270",
		pos="e,3219.7,136.17 3948.9,403.59 3941.5,393.95 3931,377.37 3931,361 3931,361 3931,361 3931,179 3931,143.64 3392.8,137.33 3228.2,136.23"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 4018.99 403.81 4012.47 394.1 4003 377.2 4003 361 4003 361 4003 361 4003 179 4003 139.94 3403.18 136.23 3228.31 \
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		label=trna_vaf,
		lp="4020,270",
		pos="e,3219.8,135.97 4019,403.81 4012.5,394.1 4003,377.2 4003,361 4003,361 4003,361 4003,179 4003,139.94 3403.2,136.23 3228.3,135.98"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 757 350.5 757 369.5 897 369.5 897 350.5 ",
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		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam_readcount workflow",
		pos="827,360",
		rects="757,350.5,897,369.5",
		width=1.9444];
	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 756.57 403.69 755.76 396.09 755.91 384.99 762 378 763.24 376.57 764.59 375.25 766.03 374.04 ",
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		label=min_base_quality,
		lp="797.5,382.5",
		pos="e,772.81,369.37 756.57,403.69 755.76,396.09 755.91,384.99 762,378 763.24,376.57 764.59,375.25 766.03,374.04"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 1898.91 403.72 1910.38 394.68 1926 379.06 1926 361 1926 361 1926 361 1926 179 1926 122.26 1994.6 159.23 2051 153 \
2159.5 141.01 2933.37 137.02 3133.73 136.18 ",
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		label=normal_sample_name,
		lp="1971,270",
		pos="e,3142,136.15 1898.9,403.72 1910.4,394.68 1926,379.06 1926,361 1926,361 1926,361 1926,179 1926,122.26 1994.6,159.23 2051,153 2159.5,\
141.01 2933.4,137.02 3133.7,136.18"];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 641.52 403.58 648.99 400.47 657.78 397.18 666 395 690.3 388.56 698.31 395.41 722 387 729.33 384.4 729.73 380.76 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 758.45 373.83 764.68 369.81 757.3 369.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 746.5 380.6 0 19 3 -bam ",
		label=bam,
		lp="746.5,382.5",
		pos="e,766.15,369.45 641.52,403.58 648.99,400.47 657.78,397.18 666,395 690.3,388.56 698.31,395.41 722,387 729.33,384.4 729.73,380.76 \
737,378 743.77,375.43 750.97,373.23 758.25,371.36"];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 1997.46 403.54 2015.49 392.48 2044 373.08 2044 361 2044 361 2044 361 2044 179 2044 152.36 2072.08 159.13 2098 \
153 2148.99 140.94 2932.4 136.99 3133.99 136.17 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2062 268.1 0 36 8 -tdna_vaf ",
		label=tdna_vaf,
		lp="2062,270",
		pos="e,3142.3,136.14 1997.5,403.54 2015.5,392.48 2044,373.08 2044,361 2044,361 2044,361 2044,179 2044,152.36 2072.1,159.13 2098,153 2149,\
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	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 13 2077.23 403.79 2085.81 394.33 2098 377.91 2098 361 2098 361 2098 361 2098 179 2098 95.97 2200.23 159.58 2283 153 \
2450.69 139.68 2973.62 136.74 3133.85 136.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.6 138.59 3140.59 136.12 3133.58 133.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2134.5 268.1 0 73 15 -net_chop_method ",
		label=net_chop_method,
		lp="2134.5,270",
		pos="e,3142.1,136.11 2077.2,403.79 2085.8,394.33 2098,377.91 2098,361 2098,361 2098,361 2098,179 2098,95.97 2200.2,159.58 2283,153 2450.7,\
139.68 2973.6,136.74 3133.9,136.14"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 10 2215.38 403.64 2223.07 394.04 2234 377.5 2234 361 2234 361 2234 361 2234 179 2234 133.46 2941.98 134.53 3133.64 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.58 138.1 3140.6 135.69 3133.61 133.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2295 268.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="2295,270",
		pos="e,3142.1,135.7 2215.4,403.64 2223.1,394.04 2234,377.5 2234,361 2234,361 2234,361 2234,179 2234,133.46 2942,134.53 3133.6,135.65"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 996.91 403.52 988.11 400.33 977.7 396.99 968 395 922.59 385.69 907.38 403.34 864 387 857.76 384.65 857.42 381.88 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 847.95 372.15 840.79 370.22 845.18 376.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 896.5 380.6 0 65 15 -reference_fasta ",
		label=reference_fasta,
		lp="896.5,382.5",
		pos="e,839.54,369.36 996.91,403.52 988.11,400.33 977.7,396.99 968,395 922.59,385.69 907.38,403.34 864,387 857.76,384.65 857.42,381.88 \
852,378 850.24,376.75 848.41,375.45 846.56,374.17"];
	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1173.5 125.5 1173.5 144.5 1332.5 144.5 1332.5 125.5 ",
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		height=0.27778,
		label="SelectVariants (GATK 4.1.8.1)",
		pos="1253,135",
		rects="1173.5,125.5,1332.5,144.5",
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	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 13 1042.55 403.51 1050.91 400.7 1060.33 397.62 1069 395 1124.11 378.33 1194 418.57 1194 361 1194 361 1194 361 1194 \
179 1194 164.8 1205.3 154.8 1218 148.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1218.95 150.3 1224.21 145.07 1216.83 145.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1214 268.1 0 40 9 -reference ",
		label=reference,
		lp="1214,270",
		pos="e,1225.6,144.42 1042.6,403.51 1050.9,400.7 1060.3,397.62 1069,395 1124.1,378.33 1194,418.57 1194,361 1194,361 1194,361 1194,179 \
1194,164.8 1205.3,154.8 1218,148.03"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 2391.58 403.73 2393.35 393.67 2396 376.16 2396 361 2396 361 2396 361 2396 179 2396 141.86 2963.76 136.79 3133.58 \
136.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.57 138.56 3140.56 136.08 3133.55 133.66 ",
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		label=maximum_transcript_support_level,
		lp="2467,270",
		pos="e,3142.1,136.07 2391.6,403.73 2393.4,393.67 2396,376.16 2396,361 2396,361 2396,361 2396,179 2396,141.86 2963.8,136.79 3133.6,136.11"];
	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 991.5 215.5 991.5 234.5 1134.5 234.5 1134.5 215.5 ",
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		height=0.27778,
		label="add expression info to vcf",
		pos="1063,225",
		rects="991.5,215.5,1134.5,234.5",
		width=1.9861];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1232.89 403.81 1236.15 393.84 1241 376.4 1241 361 1241 361 1241 361 1241 269 1241 247.21 1189.97 236.43 1142.56 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1271.5 313.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="1271.5,315",
		pos="e,1134.4,230.24 1232.9,403.81 1236.1,393.84 1241,376.4 1241,361 1241,361 1241,361 1241,269 1241,247.21 1190,236.43 1142.6,231.11"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 13 2558.47 403.73 2564.39 393.95 2573 376.98 2573 361 2573 361 2573 361 2573 179 2573 112.65 2654.02 160.02 2720 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.49 138.04 3140.5 135.62 3133.51 133.14 ",
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		label=minimum_fold_change,
		lp="2619,270",
		pos="e,3142,135.63 2558.5,403.73 2564.4,393.95 2573,376.98 2573,361 2573,361 2573,361 2573,179 2573,112.65 2654,160.02 2720,153 2870.5,\
136.99 3050.1,135.35 3133.7,135.59"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 4258.36 403.59 4252.92 400.76 4246.73 397.65 4241 395 4204.8 378.3 4158 400.86 4158 361 4158 361 4158 361 4158 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3228.4 133.13 3221.42 135.63 3228.43 138.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4175.5 268.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="4175.5,270",
		pos="e,3219.9,135.64 4258.4,403.59 4252.9,400.76 4246.7,397.65 4241,395 4204.8,378.3 4158,400.86 4158,361 4158,361 4158,361 4158,179 \
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	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 13 4322.45 403.53 4301.42 392.8 4269 374.13 4269 361 4269 361 4269 361 4269 179 4269 96.41 4167.33 159.57 4085 153 \
3916.09 139.53 3389.17 136.69 3228.19 136.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3228.42 133.68 3221.42 136.11 3228.41 138.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4289.5 268.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="4289.5,270",
		pos="e,3219.9,136.1 4322.4,403.53 4301.4,392.8 4269,374.13 4269,361 4269,361 4269,361 4269,179 4269,96.41 4167.3,159.57 4085,153 3916.1,\
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	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 4397.07 403.59 4382.57 395.05 4364 380.34 4364 361 4364 361 4364 361 4364 179 4364 96.41 4262.33 159.49 4180 153 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4387.5 268.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="4387.5,270",
		pos="e,3219.8,136.02 4397.1,403.59 4382.6,395.05 4364,380.34 4364,361 4364,361 4364,361 4364,179 4364,96.41 4262.3,159.49 4180,153 3991.6,\
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	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1116.65 403.62 1121.68 393.74 1129 376.68 1129 361 1129 361 1129 361 1129 269 1129 254.23 1117.25 244.27 1103.67 \
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		label=sample_name,
		lp="1158,315",
		pos="e,1096,234.37 1116.6,403.62 1121.7,393.74 1129,376.68 1129,361 1129,361 1129,361 1129,269 1129,254.23 1117.3,244.27 1103.7,237.69"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 1092.69 403.61 1084.34 400.35 1074.34 396.94 1065 395 1037.31 389.24 964.53 396.78 938 387 931.74 384.69 932.12 \
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		label=sample,
		lp="953.5,382.5",
		pos="e,896.91,368.72 1092.7,403.61 1084.3,400.35 1074.3,396.94 1065,395 1037.3,389.24 964.53,396.78 938,387 931.74,384.69 932.12,380.64 \
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	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 812 305.5 812 324.5 1056 324.5 1056 305.5 ",
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	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 13 1090.18 403.5 1082.31 400.6 1073.32 397.47 1065 395 1018.18 381.11 994.35 402.61 958 370 945.03 358.36 952.68 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 946.47 330.48 940.78 325.72 942.26 332.98 ",
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		label=sample_name,
		lp="987,360",
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	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 871.5 260.5 871.5 279.5 1014.5 279.5 1014.5 260.5 ",
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		label="add expression info to vcf",
		pos="943,270",
		rects="871.5,260.5,1014.5,279.5",
		width=1.9861];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 1105.64 403.83 1096.08 391.2 1077.96 365.9 1067 342 1059.85 326.41 1068.11 317.15 1056 305 1045.44 294.41 1031.72 \
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		label=sample_name,
		lp="1096,337.5",
		pos="e,1009.6,279.47 1105.6,403.83 1096.1,391.2 1078,365.9 1067,342 1059.8,326.41 1068.1,317.15 1056,305 1045.4,294.41 1031.7,287.09 \
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	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 1132.32 403.66 1140.5 400.57 1150.09 397.27 1159 395 1207.8 382.6 1383 411.35 1383 361 1383 361 1383 361 1383 \
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		label=sample_name,
		lp="1412,270",
		pos="e,3142.2,135.88 1132.3,403.66 1140.5,400.57 1150.1,397.27 1159,395 1207.8,382.6 1383,411.35 1383,361 1383,361 1383,361 1383,179 \
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	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 338.09 403.59 349.32 400.32 362.69 396.91 375 395 414.13 388.92 514.82 397.48 553 387 602.09 373.52 606.2 350.51 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 684.5 335.6 0 61 15 -expression_file ",
		label=expression_file,
		lp="684.5,337.5",
		pos="e,878.99,279.47 338.09,403.59 349.32,400.32 362.69,396.91 375,395 414.13,388.92 514.82,397.48 553,387 602.09,373.52 606.2,350.51 \
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	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 4475.69 403.8 4465.36 394.59 4451 378.61 4451 361 4451 361 4451 361 4451 179 4451 99.93 4353.81 159.41 4275 153 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4469 268.1 0 36 8 -expn_val ",
		label=expn_val,
		lp="4469,270",
		pos="e,3219.8,135.92 4475.7,403.8 4465.4,394.59 4451,378.61 4451,361 4451,361 4451,361 4451,179 4451,99.929 4353.8,159.41 4275,153 4067,\
136.09 3409.9,135.69 3228.1,135.91"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 13 4567.27 403.5 4554.14 394.71 4537 379.66 4537 361 4537 361 4537 361 4537 179 4537 101.69 4442.05 159.35 4365 153 \
4138.5 134.34 3420.05 135.23 3228.38 135.82 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4581.5 268.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="4581.5,270",
		pos="e,3219.9,135.85 4567.3,403.5 4554.1,394.71 4537,379.66 4537,361 4537,361 4537,361 4537,179 4537,101.69 4442.1,159.35 4365,153 4138.5,\
134.34 3420.1,135.23 3228.4,135.82"];
	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 13 4679.77 403.79 4671.19 394.33 4659 377.91 4659 361 4659 361 4659 361 4659 179 4659 132.86 4499.03 156.2 4453 153 \
4207.97 135.95 3428.47 135.7 3228.24 135.92 ",
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		label=netmhc_stab,
		lp="4685.5,270",
		pos="e,3220,135.93 4679.8,403.79 4671.2,394.33 4659,377.91 4659,361 4659,361 4659,361 4659,179 4659,132.86 4499,156.2 4453,153 4208,135.95 \
3428.5,135.7 3228.2,135.92"];
	epitope_lengths_class_ii -> pvacseq	[_draw_="c 7 -#000000 B 13 4786.71 403.61 4774.41 394.69 4758 379.35 4758 361 4758 361 4758 361 4758 179 4758 133.3 4599.59 156.18 4554 153 \
4287.92 134.46 3437.93 135.34 3228.15 135.86 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4808 268.1 0 100 24 -epitope_lengths_class_ii ",
		label=epitope_lengths_class_ii,
		lp="4808,270",
		pos="e,3219.8,135.88 4786.7,403.61 4774.4,394.69 4758,379.35 4758,361 4758,361 4758,361 4758,179 4758,133.3 4599.6,156.18 4554,153 4287.9,\
134.46 3437.9,135.34 3228.1,135.86"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 16 1660.02 403.59 1666.04 400.82 1672.79 397.74 1679 395 1714.33 379.38 1759 399.63 1759 361 1759 361 1759 361 1759 \
179 1759 103.01 1852.27 159.31 1928 153 2168.87 132.94 2935.55 134.89 3133.83 135.76 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1780 268.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="1780,270",
		pos="e,3142.3,135.8 1660,403.59 1666,400.82 1672.8,397.74 1679,395 1714.3,379.38 1759,399.63 1759,361 1759,361 1759,361 1759,179 1759,\
103.01 1852.3,159.31 1928,153 2168.9,132.94 2935.6,134.89 3133.8,135.76"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 2694.53 403.7 2695.12 393.61 2696 376.06 2696 361 2696 361 2696 361 2696 179 2696 135.35 3011.71 134.14 3133.69 \
135.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.59 137.76 3140.62 135.38 3133.64 132.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2750.5 268.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="2750.5,270",
		pos="e,3142.1,135.39 2694.5,403.7 2695.1,393.61 2696,376.06 2696,361 2696,361 2696,361 2696,179 2696,135.35 3011.7,134.14 3133.7,135.31"];
	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1258.5 80.5 1258.5 99.5 1415.5 99.5 1415.5 80.5 ",
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		height=0.27778,
		label="add VEP annotation to report",
		pos="1337,90",
		rects="1258.5,80.5,1415.5,99.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 10 1520.33 403.57 1490.47 393.91 1448 377.3 1448 361 1448 361 1448 361 1448 134 1448 117.81 1437.6 107.5 1423.18 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1469 245.6 0 42 10 -vep_fields ",
		label=vep_fields,
		lp="1469,247.5",
		pos="e,1415.3,97.922 1520.3,403.57 1490.5,393.91 1448,377.3 1448,361 1448,361 1448,361 1448,134 1448,117.81 1437.6,107.5 1423.2,100.99"];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 1353.26 403.53 1331.17 396.45 1309 383.69 1309 361 1309 361 1309 361 1309 179 1309 165.06 1297.96 155.03 1285.68 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1342 268.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="1342,270",
		pos="e,1278.4,144.5 1353.3,403.53 1331.2,396.45 1309,383.69 1309,361 1309,361 1309,361 1309,179 1309,165.06 1298,155.03 1285.7,148.17"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 873.03 403.51 862.17 399.76 850.89 394.45 842 387 838.68 384.22 835.93 380.5 833.74 376.75 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 848.5 380.6 0 13 3 -vcf ",
		label=vcf,
		lp="848.5,382.5",
		pos="e,830,369.29 873.03,403.51 862.17,399.76 850.89,394.45 842,387 838.68,384.22 835.93,380.5 833.74,376.75"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 2816.93 403.61 2835.56 392.62 2865 373.31 2865 361 2865 361 2865 361 2865 179 2865 152.21 3045.64 141.35 3133.77 \
137.65 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2883.5 268.1 0 37 8 -tdna_cov ",
		label=tdna_cov,
		lp="2883.5,270",
		pos="e,3142.3,137.3 2816.9,403.61 2835.6,392.62 2865,373.31 2865,361 2865,361 2865,361 2865,179 2865,152.21 3045.6,141.35 3133.8,137.65"];
	epitope_lengths_class_i -> pvacseq	[_draw_="c 7 -#000000 B 10 2905.36 403.78 2908.03 393.76 2912 376.28 2912 361 2912 361 2912 361 2912 179 2912 156.78 3056.92 144.01 3134.02 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.84 141.26 3140.66 138.35 3133.52 136.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2960.5 268.1 0 97 23 -epitope_lengths_class_i ",
		label=epitope_lengths_class_i,
		lp="2960.5,270",
		pos="e,3142.2,138.25 2905.4,403.78 2908,393.76 2912,376.28 2912,361 2912,361 2912,361 2912,179 2912,156.78 3056.9,144.01 3134,138.79"];
	binding_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 3030.65 403.62 3035.68 393.74 3043 376.68 3043 361 3043 361 3043 361 3043 179 3043 159.5 3093.88 147.82 3133.85 \
141.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3134.13 144.1 3140.69 140.65 3133.41 139.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3080 268.1 0 74 17 -binding_threshold ",
		label=binding_threshold,
		lp="3080,270",
		pos="e,3142.2,140.43 3030.6,403.62 3035.7,393.74 3043,376.68 3043,361 3043,361 3043,361 3043,179 3043,159.5 3093.9,147.82 3133.9,141.66"];
	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 10 530.77 403.5 572.4 396.73 623.84 388.2 626 387 630.68 384.41 629.22 380.4 634 378 653.83 368.03 704.52 363.82 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 749.06 364.53 755.97 361.83 748.89 359.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 677.5 380.6 0 87 19 -min_mapping_quality ",
		label=min_mapping_quality,
		lp="677.5,382.5",
		pos="e,757.48,361.78 530.77,403.5 572.4,396.73 623.84,388.2 626,387 630.68,384.41 629.22,380.4 634,378 653.83,368.03 704.52,363.82 748.97,\
362.08"];
	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 3134.31 403.72 3135.8 393.65 3138 376.12 3138 361 3138 361 3138 361 3138 179 3138 166.48 3147.23 156.33 3157.14 \
149.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3158.28 151.22 3162.75 145.3 3155.56 147.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3173 268.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="3173,270",
		pos="e,3164,144.46 3134.3,403.72 3135.8,393.65 3138,376.12 3138,361 3138,361 3138,361 3138,179 3138,166.48 3147.2,156.33 3157.1,149.04"];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 13 114.19 403.55 126.24 400.52 140.2 397.28 153 395 185.48 389.21 448 393.99 448 361 448 361 448 361 448 224 448 \
223.44 958.69 167.95 1166.55 145.38 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 459.5 268.1 0 23 6 -fields ",
		label=fields,
		lp="459.5,270",
		pos="e,1174.7,144.49 114.19,403.55 126.24,400.52 140.2,397.28 153,395 185.48,389.21 448,393.99 448,361 448,361 448,361 448,224 448,223.44 \
958.69,167.95 1166.5,145.38"];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 221.99 403.52 231.06 400.25 241.9 396.85 252 395 273.88 391 431.63 395.92 452 387 466.97 380.45 478 377.34 478 \
361 478 361 478 361 478 269 478 243.97 823.04 232.02 983.15 227.83 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 510 313.1 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="510,315",
		pos="e,991.56,227.61 221.99,403.52 231.06,400.25 241.9,396.85 252,395 273.88,391 431.63,395.92 452,387 466.97,380.45 478,377.34 478,361 \
478,361 478,361 478,269 478,243.97 823.04,232.02 983.15,227.83"];
	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 16 221.49 403.67 230.66 400.34 241.71 396.85 252 395 302.33 385.93 433.11 402 482 387 525.15 373.76 526.56 350.87 \
568 333 658.04 294.17 686.78 300.84 784 288 809.83 284.59 838.09 281.39 863.52 278.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 863.46 281.19 870.17 278.02 862.95 276.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 600 335.6 0 64 15 -expression_tool ",
		label=expression_tool,
		lp="600,337.5",
		pos="e,871.68,277.86 221.49,403.67 230.66,400.34 241.71,396.85 252,395 302.33,385.93 433.11,402 482,387 525.15,373.76 526.56,350.87 568,\
333 658.04,294.17 686.78,300.84 784,288 809.83,284.59 838.09,281.39 863.52,278.72"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 3225.21 403.71 3224.32 393.62 3223 376.08 3223 361 3223 361 3223 361 3223 179 3223 166.45 3213.73 156.2 3203.9 \
148.86 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3248.5 268.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="3248.5,270",
		pos="e,3197.1,144.26 3225.2,403.71 3224.3,393.62 3223,376.08 3223,361 3223,361 3223,361 3223,179 3223,166.45 3213.7,156.2 3203.9,148.86"];
	percentile_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 3320.19 403.54 3313.09 393.87 3303 377.24 3303 361 3303 361 3303 361 3303 179 3303 162.42 3262.41 150.66 3228.06 \
143.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3228.76 141.32 3221.42 142.38 3227.82 146.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3345.5 268.1 0 85 20 -percentile_threshold ",
		label=percentile_threshold,
		lp="3345.5,270",
		pos="e,3219.9,142.09 3320.2,403.54 3313.1,393.87 3303,377.24 3303,361 3303,361 3303,361 3303,179 3303,162.42 3262.4,150.66 3228.1,143.68"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 10 3437.62 403.64 3429.93 394.04 3419 377.5 3419 361 3419 361 3419 361 3419 179 3419 140.57 3297.3 135.11 3227.95 \
135.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3228.27 132.67 3221.28 135.14 3228.29 137.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3459.5 268.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="3459.5,270",
		pos="e,3219.8,135.15 3437.6,403.64 3429.9,394.04 3419,377.5 3419,361 3419,361 3419,361 3419,179 3419,140.57 3297.3,135.11 3228,135.12"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 3569.46 403.53 3554.18 395.13 3535 380.67 3535 361 3535 361 3535 361 3535 179 3535 148.46 3324.74 139.45 3228.31 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3598 268.1 0 126 26 -downstream_sequence_length ",
		label=downstream_sequence_length,
		lp="3598,270",
		pos="e,3219.9,136.72 3569.5,403.53 3554.2,395.13 3535,380.67 3535,361 3535,361 3535,361 3535,179 3535,148.46 3324.7,139.45 3228.3,136.93"];
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 991.64 222.56 831.81 218.87 459 207.43 459 181 459 181 459 181 459 89 459 51.97 1021.07 46.82 1195.81 46.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1195.57 48.56 1202.56 46.08 1195.55 43.66 ",
		pos="e,1204.1,46.079 991.64,222.56 831.81,218.87 459,207.43 459,181 459,181 459,181 459,89 459,51.972 1021.1,46.818 1195.8,46.11"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1125 170.5 1125 189.5 1187 189.5 1187 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1156 177.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="1156,180",
		rects="1125,170.5,1187,189.5",
		width=0.86111];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 1081.37 215.5 1095.26 209.09 1114.5 200.19 1129.97 193.04 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1123.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="1123.5,202.5",
		pos="e,1137.7,189.48 1081.4,215.5 1095.3,209.09 1114.5,200.19 1130,193.04"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 10 757.17 355.25 739.42 352.77 723.73 348.69 718 342 715.4 338.96 715.28 335.94 718 333 724.67 325.78 761.91 321.62 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 803.67 321.68 810.52 318.86 803.4 316.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 770 335.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="770,337.5",
		pos="e,812.04,318.77 757.17,355.25 739.42,352.77 723.73,348.69 718,342 715.4,338.96 715.28,335.94 718,333 724.67,325.78 761.91,321.62 \
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	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 825.95 350.62 825.73 344.9 826.5 337.55 831 333 833.3 330.67 837 328.67 841.66 326.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 842.3 329.3 848.26 324.88 840.85 324.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 880 335.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="880,337.5",
		pos="e,849.7,324.43 825.95,350.62 825.73,344.9 826.5,337.55 831,333 833.3,330.67 837,328.67 841.66,326.93"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 896.87 352.24 909.85 349.78 920.92 346.46 926 342 928.79 339.54 930.62 336.14 931.82 332.6 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 937.5 335.6 0 13 3 -vcf ",
		label=vcf,
		lp="937.5,337.5",
		pos="e,933.62,324.49 896.87,352.24 909.85,349.78 920.92,346.46 926,342 928.79,339.54 930.62,336.14 931.82,332.6"];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 7 1160.62 170.71 1164.3 164.87 1170 157.35 1177 153 1180.41 150.88 1184.05 149.03 1187.82 147.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1188.65 149.71 1194.31 144.92 1186.89 145.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1183.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1183.5,157.5",
		pos="e,1195.7,144.38 1160.6,170.71 1164.3,164.87 1170,157.35 1177,153 1180.4,150.88 1184.1,149.03 1187.8,147.4"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 7 1153.6 170.52 1150.84 158.77 1147.99 137.58 1159 125 1171.47 110.74 1211.61 102.37 1250.61 97.51 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1165.5 133.1 0 13 3 -vcf ",
		label=vcf,
		lp="1165.5,135",
		pos="e,1258.9,96.525 1153.6,170.52 1150.8,158.77 1148,137.58 1159,125 1171.5,110.74 1211.6,102.37 1250.6,97.51"];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 1186.8 173.45 1223.59 167.1 1287.05 157.08 1342 153 1525.09 139.41 2863.64 136.52 3133.62 136.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3133.52 138.52 3140.52 136.06 3133.52 133.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1360.5 155.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="1360.5,157.5",
		pos="e,3142,136.06 1186.8,173.45 1223.6,167.1 1287,157.08 1342,153 1525.1,139.41 2863.6,136.52 3133.6,136.07"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 1269.6 125.5 1282.02 119.14 1299.2 110.35 1313.1 103.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1313.98 105.54 1319.09 100.17 1311.74 101.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1308.5 110.6 0 13 3 -tsv ",
		label=tsv,
		lp="1308.5,112.5",
		pos="e,1320.4,99.478 1269.6,125.5 1282,119.14 1299.2,110.35 1313.1,103.23"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 935.74 305.71 936.83 300.47 938.28 293.53 939.6 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 941.92 288.1 940.96 280.75 937.13 287.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 945.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="945.5,292.5",
		pos="e,941.27,279.27 935.74,305.71 936.83,300.47 938.28,293.53 939.6,287.24"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 966.71 260.5 985.28 253.85 1011.28 244.53 1031.59 237.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1032.15 239.66 1037.92 234.99 1030.5 235.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1019.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="1019.5,247.5",
		pos="e,1039.3,234.48 966.71,260.5 985.28,253.85 1011.3,244.53 1031.6,237.26"];
	add_vep_fields_to_table -> annotated_tsv	[_draw_="c 7 -#000000 B 4 1337 80.71 1337 75.59 1337 68.85 1337 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1339.45 62.78 1337 55.78 1334.55 62.78 ",
		pos="e,1337,54.265 1337,80.709 1337,75.593 1337,68.848 1337,62.666"];
	pvacseq -> pvacseq_predictions	[_draw_="c 7 -#000000 B 4 3142.24 132.04 2918.68 120.73 1793.96 63.81 1508.14 49.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1508.55 46.91 1501.44 49.01 1508.31 51.81 ",
		pos="e,1499.9,48.931 3142.2,132.04 2918.7,120.73 1794,63.81 1508.1,49.347"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1027 260.5 1027 279.5 1099 279.5 1099 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1063 267.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="1063,270",
		rects="1027,260.5,1099,279.5",
		width=1];
	default1 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 1063 260.71 1063 255.59 1063 248.85 1063 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1065.45 242.78 1063 235.78 1060.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1083.5 245.6 0 41 9 -data_type ",
		label=data_type,
		lp="1083.5,247.5",
		pos="e,1063,234.27 1063,260.71 1063,255.59 1063,248.85 1063,242.67"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1017.5 350.5 1017.5 369.5 1064.5 369.5 1064.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1041 357.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="1041,360",
		rects="1017.5,350.5,1064.5,369.5",
		width=0.65278];
	default2 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 4 1019.86 350.5 1003.59 343.97 980.93 334.86 962.98 327.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 963.91 325.38 956.5 325.04 962.08 329.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1017.5 335.6 0 41 9 -data_type ",
		label=data_type,
		lp="1017.5,337.5",
		pos="e,955.1,324.48 1019.9,350.5 1003.6,343.97 980.93,334.86 962.98,327.64"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1070 305.5 1070 324.5 1120 324.5 1120 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1095 312.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="1095,315",
		rects="1070,305.5,1120,324.5",
		width=0.69444];
	default3 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 1088.35 305.52 1083.2 299.59 1075.51 292.03 1067 288 1062.32 285.78 1043.93 282.86 1022.7 280.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1023.2 277.66 1015.94 279.19 1022.57 282.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1099.5 290.6 0 41 9 -data_type ",
		label=data_type,
		lp="1099.5,292.5",
		pos="e,1014.4,279 1088.4,305.52 1083.2,299.59 1075.5,292.03 1067,288 1062.3,285.78 1043.9,282.86 1022.7,280.06"];
	default4	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1455 125.5 1455 144.5 1521 144.5 1521 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1488 132.5 0 50 9 -\"pvacseq\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"pvacseq\"",
		pos="1488,135",
		rects="1455,125.5,1521,144.5",
		width=0.91667];
	default4 -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 7 1478.97 125.58 1472.11 119.67 1462.14 112.12 1452 108 1443.02 104.35 1433.36 101.47 1423.59 99.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1424.2 96.83 1416.85 97.75 1423.18 101.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1479 110.6 0 24 6 -prefix ",
		label=prefix,
		lp="1479,112.5",
		pos="e,1415.4,97.433 1479,125.58 1472.1,119.67 1462.1,112.12 1452,108 1443,104.35 1433.4,101.47 1423.6,99.199"];
}