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		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 937.5 35.5 937.5 54.5 1046.5 54.5 1046.5 35.5 ",
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	}
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1157.5 170.5 1157.5 189.5 1240.5 189.5 1240.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1199 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="1199,180",
		rects="1157.5,170.5,1240.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 4 1197.12 313.6 1197.44 290.82 1198.34 227.55 1198.77 197.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.21 197.72 1198.86 190.69 1196.31 197.66 ",
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	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 570.5 260.5 570.5 279.5 813.5 279.5 813.5 260.5 ",
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		pos="692,270",
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	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1176.51 313.67 1167.34 310.34 1156.29 306.85 1146 305 1095.67 295.93 964.23 314.01 916 297 909.71 294.78 910.24 \
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	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 1171.85 313.62 1116.38 295.13 988.4 252.44 988 252 963.15 224.75 969.17 177.37 974.66 152.43 ",
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		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="1308,135",
		rects="1117,125.5,1499,144.5",
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	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 1217.58 313.58 1233.91 305.38 1254 291.18 1254 271 1254 271 1254 271 1254 179 1254 165.3 1264.76 155.27 1276.68 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1277.75 150.56 1282.82 145.14 1275.48 146.21 ",
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		lp="1274,225",
		pos="e,1284.2,144.44 1217.6,313.58 1233.9,305.38 1254,291.18 1254,271 1254,271 1254,271 1254,179 1254,165.3 1264.8,155.27 1276.7,148.35"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1013 170.5 1013 189.5 1153 189.5 1153 170.5 ",
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		height=0.27778,
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		pos="1083,180",
		rects="1013,170.5,1153,189.5",
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	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 1192.2 313.88 1184.57 300.9 1169.27 274.64 1157 252 1148.19 235.75 1150.54 228.58 1138 215 1129.93 206.26 1119.11 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1110.53 191.27 1103.21 190.12 1108.22 195.59 ",
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		lp="1177,247.5",
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	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 547 313.57 567.78 306.4 598.72 296.01 626 288 633.42 285.82 641.35 283.65 649.06 281.62 ",
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		label=bam,
		lp="635.5,292.5",
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	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 899.74 313.52 887.43 310.45 873.13 307.19 860 305 823.45 298.89 811.55 310.39 777 297 770.78 294.59 771.04 290.82 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 749.71 279.48 742.31 279.84 748.32 284.17 ",
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		label=max_uncalled,
		lp="805.5,292.5",
		pos="e,740.86,279.41 899.74,313.52 887.43,310.45 873.13,307.19 860,305 823.45,298.89 811.55,310.39 777,297 770.78,294.59 771.04,290.82 \
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	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1224 80.5 1224 99.5 1392 99.5 1392 80.5 ",
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		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="1308,90",
		rects="1224,80.5,1392,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 1461.74 313.53 1483.83 306.45 1506 293.69 1506 271 1506 271 1506 271 1506 134 1506 110.46 1451.88 99.78 1400.23 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1400.67 92.53 1393.48 94.36 1400.24 97.41 ",
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		label=reference_sizes,
		lp="1538.5,202.5",
		pos="e,1392,94.223 1461.7,313.53 1483.8,306.45 1506,293.69 1506,271 1506,271 1506,271 1506,134 1506,110.46 1451.9,99.781 1400.2,94.949"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 398.73 313.52 427.09 305.73 471.13 294.47 510 288 528.13 284.98 547.38 282.46 566.31 280.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 566.48 282.81 573.18 279.62 565.96 277.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 553 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="553,292.5",
		pos="e,574.68,279.46 398.73,313.52 427.09,305.73 471.13,294.47 510,288 528.13,284.98 547.38,282.46 566.31,280.36"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 64.81 313.54 71.91 303.87 82 287.24 82 271 82 271 82 271 82 179 82 136.9 720.72 135.23 920.21 135.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 920.01 138.19 927.01 135.76 920.02 133.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 110.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="110.5,225",
		pos="e,928.53,135.76 64.813,313.54 71.909,303.87 82,287.24 82,271 82,271 82,271 82,179 82,136.9 720.72,135.23 920.21,135.74"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1042.47 313.59 1029.15 310.37 1013.42 306.99 999 305 964.61 300.26 875.64 308.82 843 297 836.73 294.73 837.18 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 812.93 279.29 805.54 279.87 811.68 284.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 875 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="875,292.5",
		pos="e,804.08,279.48 1042.5,313.59 1029.2,310.37 1013.4,306.99 999,305 964.61,300.26 875.64,308.82 843,297 836.73,294.73 837.18,290.49 \
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	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 720.81 313.65 711.41 309.89 702.65 304.55 696 297 693.69 294.38 692.4 291 691.74 287.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 732 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="732,292.5",
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	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 645.46 313.6 644.59 306.15 644.57 295.34 650 288 650.98 286.67 652.09 285.45 653.29 284.32 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 668.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="668.5,292.5",
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	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 257.3 313.6 265.48 310.5 275.07 307.21 284 305 375.4 282.42 481.44 274.1 562.5 271.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 562.33 273.79 569.25 271.12 562.17 268.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 389 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="389,292.5",
		pos="e,570.76,271.07 257.3,313.6 265.48,310.5 275.07,307.21 284,305 375.4,282.42 481.44,274.1 562.5,271.34"];
	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 1308 313.7 1308 303.6 1308 286.05 1308 271 1308 271 1308 271 1308 179 1308 170.31 1308 160.63 1308 152.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1310.45 152.76 1308 145.76 1305.55 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1351 223.1 0 86 19 -assay_non_cpg_sites ",
		label=assay_non_cpg_sites,
		lp="1351,225",
		pos="e,1308,144.24 1308,313.7 1308,303.6 1308,286.05 1308,271 1308,271 1308,271 1308,179 1308,170.31 1308,160.63 1308,152.65"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 1169.75 170.52 1148.89 163.83 1123.44 154.13 1117 145 1107.94 132.15 1109.27 87.24 1110.77 62.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1113.2 62.86 1111.23 55.71 1108.31 62.53 ",
		pos="e,1111.3,54.197 1169.8,170.52 1148.9,163.83 1123.4,154.13 1117,145 1107.9,132.15 1109.3,87.236 1110.8,62.556"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1157.82 170.65 1156.53 170.43 1155.26 170.21 1154 170 1127.02 165.54 1119.91 166.82 1093 162 1068.73 157.65 1041.82 \
151.57 1020.24 146.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1021.1 144.08 1013.72 144.81 1019.95 148.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1099.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1099.5,157.5",
		pos="e,1012.3,144.45 1157.8,170.65 1156.5,170.43 1155.3,170.21 1154,170 1127,165.54 1119.9,166.82 1093,162 1068.7,157.65 1041.8,151.57 \
1020.2,146.39"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 7 1209.03 170.62 1216.36 164.89 1226.77 157.54 1237 153 1242.34 150.63 1248.05 148.57 1253.84 146.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1254.24 149.2 1260.28 144.91 1252.88 144.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1243.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1243.5,157.5",
		pos="e,1261.7,144.49 1209,170.62 1216.4,164.89 1226.8,157.54 1237,153 1242.3,150.63 1248.1,148.57 1253.8,146.77"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1026 215.5 1026 234.5 1136 234.5 1136 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1081 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1081,225",
		rects="1026,215.5,1136,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 785.37 260.5 849.11 254.43 935.7 245.65 1017.66 235.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1017.94 237.84 1024.58 234.53 1017.33 232.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 960.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="960.5,247.5",
		pos="e,1026.1,234.34 785.37,260.5 849.11,254.43 935.7,245.65 1017.7,235.4"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 979.7 125.55 980.63 114.89 982.47 96.03 985 80 985.91 74.22 987.14 67.93 988.31 62.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 990.64 63.18 989.74 55.82 985.85 62.14 ",
		pos="e,990.06,54.344 979.7,125.55 980.63,114.89 982.47,96.025 985,80 985.91,74.219 987.14,67.93 988.31,62.351"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 1104.31 215.5 1122.49 208.88 1147.92 199.61 1167.85 192.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1168.58 194.69 1174.31 190 1166.9 190.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1159.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="1159.5,202.5",
		pos="e,1175.7,189.48 1104.3,215.5 1122.5,208.88 1147.9,199.61 1167.8,192.35"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 1034.76 215.5 1019.21 210.49 1003.03 202.55 992 190 991.68 189.63 986.56 168.11 982.84 152.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 985.3 152.08 981.31 145.83 980.53 153.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1001.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="1001.5,180",
		pos="e,980.96,144.36 1034.8,215.5 1019.2,210.49 1003,202.55 992,190 991.68,189.63 986.56,168.11 982.84,152.35"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 1081.39 215.71 1081.62 210.59 1081.94 203.85 1082.22 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1084.67 197.88 1082.55 190.78 1079.77 197.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1091.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="1091.5,202.5",
		pos="e,1082.6,189.27 1081.4,215.71 1081.6,210.59 1081.9,203.85 1082.2,197.67"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 1288.84 80.5 1274.22 74.03 1253.92 65.02 1237.71 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1238.9 55.69 1231.51 55.09 1236.91 60.17 ",
		pos="e,1230.1,54.478 1288.8,80.505 1274.2,74.026 1253.9,65.024 1237.7,57.84"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 985.5 80.5 985.5 99.5 1104.5 99.5 1104.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1045 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="1045,90",
		rects="985.5,80.5,1104.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 1050.01 80.71 1053.32 75.24 1057.76 67.9 1061.7 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1063.69 62.82 1065.22 55.56 1059.5 60.28 ",
		pos="e,1066,54.265 1050,80.709 1053.3,75.236 1057.8,67.899 1061.7,61.381"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 1281.15 125.57 1263.73 119.58 1240.84 110.71 1222 100 1201.59 88.4 1180.58 71.38 1166.97 59.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1168.92 58.02 1162.05 55.23 1165.68 61.69 ",
		pos="e,1160.9,54.225 1281.2,125.57 1263.7,119.58 1240.8,110.71 1222,100 1201.6,88.4 1180.6,71.382 1167,59.563"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 1308 125.71 1308 120.59 1308 113.85 1308 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1310.45 107.78 1308 100.78 1305.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1354.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="1354.5,112.5",
		pos="e,1308,99.265 1308,125.71 1308,120.59 1308,113.85 1308,107.67"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 1080.38 170.72 1078.69 165.57 1076.37 158.84 1074 153 1067.48 136.92 1058.96 119.01 1052.85 106.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1055.2 105.83 1049.9 100.66 1050.82 108.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1080.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="1080.5,135",
		pos="e,1049.2,99.301 1080.4,170.72 1078.7,165.57 1076.4,158.84 1074,153 1067.5,136.92 1059,119.01 1052.8,106.6"];
}