digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 1483 368 1483 0 ",
		bb="0,0,1483,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 1475 360 1475 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,1475,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference_sizes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 313.5 16.5 332.5 109.5 332.5 109.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 63 320.5 0 77 15 -reference_sizes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_sizes,
			pos="63,323",
			rects="16.5,313.5,109.5,332.5",
			width=1.2917];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1121.5 313.5 1121.5 332.5 1264.5 332.5 1264.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1193 320.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="1193,323",
			rects="1121.5,313.5,1264.5,332.5",
			width=1.9861];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 327.5 313.5 327.5 332.5 422.5 332.5 422.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 375 320.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="375,323",
			rects="327.5,313.5,422.5,332.5",
			width=1.3194];
		QCannotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1383.5 313.5 1383.5 332.5 1466.5 332.5 1466.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1425 320.5 0 67 12 -QCannotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=QCannotation,
			pos="1425,323",
			rects="1383.5,313.5,1466.5,332.5",
			width=1.1528];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 723 313.5 723 332.5 809 332.5 809 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 766 320.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="766,323",
			rects="723,313.5,809,332.5",
			width=1.1944];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1269 313.5 1269 332.5 1379 332.5 1379 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1324 320.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="1324,323",
			rects="1269,313.5,1379,332.5",
			width=1.5278];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 813.5 313.5 813.5 332.5 942.5 332.5 942.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 878 320.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="878,323",
			rects="813.5,313.5,942.5,332.5",
			width=1.7917];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 426.5 313.5 426.5 332.5 579.5 332.5 579.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 503 320.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="503,323",
			rects="426.5,313.5,579.5,332.5",
			width=2.125];
		assay_non_cpg_sites	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 204.5 313.5 204.5 332.5 323.5 332.5 323.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 264 320.5 0 103 19 -assay_non_cpg_sites ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=assay_non_cpg_sites,
			pos="264,323",
			rects="204.5,313.5,323.5,332.5",
			width=1.6528];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 947 313.5 947 332.5 1117 332.5 1117 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1032 320.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="1032,323",
			rects="947,313.5,1117,332.5",
			width=2.3611];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 114 313.5 114 332.5 200 332.5 200 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 157 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="157,323",
			rects="114,313.5,200,332.5",
			width=1.1944];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 583.5 313.5 583.5 332.5 718.5 332.5 718.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 651 320.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="651,323",
			rects="583.5,313.5,718.5,332.5",
			width=1.875];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 356 8 356 63 682 63 682 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 410 15 0 92 16 -Workflow Outputs ",
			bb="356,8,682,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="410,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 564.5 35.5 564.5 54.5 673.5 54.5 673.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 619 42.5 0 93 18 -gathered_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gathered_directory,
			pos="619,45",
			rects="564.5,35.5,673.5,54.5",
			width=1.5139];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 439.5 35.5 439.5 54.5 478.5 54.5 478.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 459 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpgs,
			pos="459,45",
			rects="439.5,35.5,478.5,54.5",
			width=0.54167];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 519.5 35.5 519.5 54.5 560.5 54.5 560.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 540 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cram,
			pos="540,45",
			rects="519.5,35.5,560.5,54.5",
			width=0.56944];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 483 35.5 483 54.5 515 54.5 515 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 499 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="499,45",
			rects="483,35.5,515,54.5",
			width=0.44444];
		cpg_bigwig	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 364.5 35.5 364.5 54.5 435.5 54.5 435.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400 42.5 0 55 10 -cpg_bigwig ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpg_bigwig,
			pos="400,45",
			rects="364.5,35.5,435.5,54.5",
			width=0.98611];
	}
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 217 80.5 217 99.5 385 99.5 385 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="301,90",
		rects="217,80.5,385,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 65.36 313.78 68.03 303.76 72 286.28 72 271 72 271 72 271 72 134 72 104.77 144.97 94.84 208.53 91.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.63 94.18 215.52 91.42 208.42 89.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 104.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="104.5,202.5",
		pos="e,217.03,91.354 65.365,313.78 68.031,303.76 72,286.28 72,271 72,271 72,271 72,134 72,104.77 144.97,94.839 208.53,91.732"];
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 644.5 260.5 644.5 279.5 887.5 279.5 887.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 766 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="766,270",
		rects="644.5,260.5,887.5,279.5",
		width=3.375];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 1158.78 313.56 1146.03 310.59 1131.4 307.4 1118 305 1044.98 291.9 962.47 283.6 895.7 278.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 895.89 276.03 888.73 277.95 895.52 280.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1092 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="1092,292.5",
		pos="e,887.22,277.83 1158.8,313.56 1146,310.59 1131.4,307.4 1118,305 1045,291.9 962.47,283.6 895.7,278.47"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 398.07 313.58 407.01 310.55 417.4 307.31 427 305 449.31 299.64 455.45 301.24 478 297 496.33 293.55 500.53 290.65 \
519 288 557.03 282.55 598.62 278.83 636.65 276.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.37 278.77 643.19 275.88 636.05 273.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 552 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="552,292.5",
		pos="e,644.7,275.78 398.07,313.58 407.01,310.55 417.4,307.31 427,305 449.31,299.64 455.45,301.24 478,297 496.33,293.55 500.53,290.65 \
519,288 557.03,282.55 598.62,278.83 636.65,276.3"];
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 110 125.5 110 144.5 492 144.5 492 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="301,135",
		rects="110,125.5,492,144.5",
		width=5.3056];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 371.17 313.53 367.03 303.57 361 286.43 361 271 361 271 361 271 361 179 361 164.75 349.68 154.77 336.88 148.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 337.99 145.85 330.61 145.08 335.9 150.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 381 223.1 0 40 9 -reference ",
		label=reference,
		lp="381,225",
		pos="e,329.24,144.44 371.17,313.53 367.03,303.57 361,286.43 361,271 361,271 361,271 361,179 361,164.75 349.68,154.77 336.88,148.03"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 423.5 170.5 423.5 189.5 506.5 189.5 506.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 465 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="465,180",
		rects="423.5,170.5,506.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 10 378.38 313.68 385.37 297.56 402.95 261.98 429 243 439.12 235.63 447.71 244.38 456 235 464.93 224.9 466.73 209.41 \
466.55 197.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 469.02 197.83 466.2 190.97 464.13 198.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 449 245.6 0 40 9 -reference ",
		label=reference,
		lp="449,247.5",
		pos="e,466.12,189.45 378.38,313.68 385.37,297.56 402.95,261.98 429,243 439.12,235.63 447.71,244.38 456,235 464.93,224.9 466.73,209.41 \
466.55,197.61"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 591.5 125.5 591.5 144.5 692.5 144.5 692.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 642 132.5 0 85 18 -Bisulfite QC tools ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Bisulfite QC tools",
		pos="642,135",
		rects="591.5,125.5,692.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 381.61 313.55 391.02 300.96 407.92 276.18 415 252 425.29 216.86 397.8 196.57 423 170 446.92 144.77 538.82 149.99 \
583.44 145.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 583.57 147.91 590.2 144.6 582.95 143.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437 223.1 0 40 9 -reference ",
		label=reference,
		lp="437,225",
		pos="e,591.7,144.41 381.61,313.55 391.02,300.96 407.92,276.18 415,252 425.29,216.86 397.8,196.57 423,170 446.92,144.77 538.82,149.99 \
583.44,145.46"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 511 170.5 511 189.5 651 189.5 651 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 581 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="581,180",
		rects="511,170.5,651,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 10 395.7 313.67 405.31 309.36 416.66 303.6 426 297 477.32 260.7 473.09 230.33 527 198 530.4 195.96 534.08 194.14 \
537.85 192.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 538.63 194.85 544.27 190.03 536.86 190.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 497 245.6 0 40 9 -reference ",
		label=reference,
		lp="497,247.5",
		pos="e,545.68,189.48 395.7,313.67 405.31,309.36 416.66,303.6 426,297 477.32,260.7 473.09,230.33 527,198 530.4,195.96 534.08,194.14 537.85,\
192.52"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1402.29 313.66 1384.94 305.66 1364 291.71 1364 271 1364 271 1364 271 1364 179 1364 145.87 873.23 138.14 700.93 \
136.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 701.02 134 694 136.38 700.97 138.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1392.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1392.5,225",
		pos="e,692.48,136.37 1402.3,313.66 1384.9,305.66 1364,291.71 1364,271 1364,271 1364,271 1364,179 1364,145.87 873.23,138.14 700.93,136.45"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 766 313.58 766 306.52 766 296.24 766 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 768.45 287.78 766 280.78 763.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 795 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="795,292.5",
		pos="e,766,279.26 766,313.58 766,306.52 766,296.24 766,287.55"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 1298.08 313.56 1287.86 310.49 1275.97 307.23 1265 305 1203.58 292.51 1187.46 293.26 1125 288 1049.12 281.61 964 \
277.44 895.7 274.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 896.05 272.4 888.96 274.59 895.87 277.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1237.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="1237.5,292.5",
		pos="e,887.45,274.53 1298.1,313.56 1287.9,310.49 1276,307.23 1265,305 1203.6,292.51 1187.5,293.26 1125,288 1049.1,281.61 964,277.44 895.7,\
274.84"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 867.17 313.71 856.82 306.12 840.53 295.04 825 288 820.04 285.75 814.71 283.73 809.36 281.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 810.4 279.68 802.99 279.89 808.91 284.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 850.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="850.5,292.5",
		pos="e,801.54,279.44 867.17,313.71 856.82,306.12 840.53,295.04 825,288 820.04,285.75 814.71,283.73 809.36,281.92"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 530.31 313.58 561.23 304.09 608.43 289.75 617 288 631.31 285.07 646.51 282.61 661.51 280.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 661.71 283 668.32 279.65 661.06 278.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 653 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="653,292.5",
		pos="e,669.82,279.45 530.31,313.58 561.23,304.09 608.43,289.75 617,288 631.31,285.07 646.51,282.61 661.51,280.55"];
	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 264.53 313.7 265.12 303.61 266 286.06 266 271 266 271 266 271 266 179 266 167.34 273.84 157.09 282.09 149.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.4 151.62 287.2 145.25 280.26 147.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 309 223.1 0 86 19 -assay_non_cpg_sites ",
		label=assay_non_cpg_sites,
		lp="309,225",
		pos="e,288.36,144.28 264.53,313.7 265.12,303.61 266,286.06 266,271 266,271 266,271 266,179 266,167.34 273.84,157.09 282.09,149.52"];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 990.58 313.53 955.97 306.51 905.32 296.37 861 288 848.57 285.65 835.22 283.21 822.56 280.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 823.17 278.56 815.85 279.74 822.31 283.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 946 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="946,292.5",
		pos="e,814.36,279.47 990.58,313.53 955.97,306.51 905.32,296.37 861,288 848.57,285.65 835.22,283.21 822.56,280.94"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 662.76 313.78 673.96 306.24 691.53 295.19 708 288 713.04 285.8 718.45 283.79 723.86 281.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 724.38 284.39 730.31 279.94 722.9 279.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 736.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="736.5,292.5",
		pos="e,731.75,279.48 662.76,313.78 673.96,306.24 691.53,295.19 708,288 713.04,285.8 718.45,283.79 723.86,281.98"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 320.56 80.5 335.47 74.03 356.2 65.02 372.74 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 373.65 60.12 379.09 55.08 371.7 55.62 ",
		pos="e,380.48,54.478 320.56,80.505 335.47,74.026 356.2,65.024 372.74,57.84"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 565 215.5 565 234.5 675 234.5 675 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 620 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="620,225",
		rects="565,215.5,675,234.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 737.16 260.5 714.16 253.73 681.8 244.2 656.91 236.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 657.64 234.53 650.24 234.91 656.26 239.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="717.5,247.5",
		pos="e,648.78,234.48 737.16,260.5 714.16,253.73 681.8,244.2 656.91,236.87"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 374.51 125.64 381.66 123.38 388.62 120.55 395 117 419.14 103.56 438.95 77.57 449.85 61.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 451.71 62.68 453.41 55.46 447.58 60.05 ",
		pos="e,454.22,54.187 374.51,125.64 381.66,123.38 388.62,120.55 395,117 419.14,103.56 438.95,77.568 449.85,61.038"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 301 125.71 301 120.59 301 113.85 301 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 303.45 107.78 301 100.78 298.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 347.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="347.5,112.5",
		pos="e,301,99.265 301,125.71 301,120.59 301,113.85 301,107.67"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 473.99 170.71 480.24 164.35 488.12 154.98 492 145 502.62 117.69 502.22 82.97 500.75 62.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.2 62.58 500.15 55.82 498.32 63 ",
		pos="e,500.02,54.31 473.99,170.71 480.24,164.35 488.12,154.98 492,145 502.62,117.69 502.22,82.974 500.75,62.745"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 4 432.6 170.5 406.43 163.64 369.47 153.95 341.37 146.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 342.19 144.27 334.8 144.86 340.95 149.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 403.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="403.5,157.5",
		pos="e,333.33,144.48 432.6,170.5 406.43,163.64 369.47,153.95 341.37,146.59"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 4 499.97 170.5 528.45 163.58 568.79 153.79 599.2 146.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 599.41 148.87 605.63 144.84 598.25 144.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 575.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="575.5,157.5",
		pos="e,607.1,144.48 499.97,170.5 528.45,163.58 568.79,153.79 599.2,146.4"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 589.38 215.5 564.75 208.67 530.01 199.03 503.5 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 504.42 189.39 497.02 189.88 503.11 194.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 565.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="565.5,202.5",
		pos="e,495.56,189.48 589.38,215.5 564.75,208.67 530.01,199.03 503.5,191.68"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 631.15 215.54 638.32 209.36 647.02 200.28 651 190 655.71 177.83 652.78 163.18 649.05 152.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 651.36 151.39 646.56 145.74 646.79 153.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 662.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="662.5,180",
		pos="e,646.02,144.33 631.15,215.54 638.32,209.36 647.02,200.28 651,190 655.71,177.83 652.78,163.18 649.05,152.22"];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 612.48 215.71 607.3 210 600.28 202.26 594.18 195.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.03 193.93 589.51 190.39 592.4 197.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 612.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="612.5,202.5",
		pos="e,588.5,189.27 612.48,215.71 607.3,210 600.28,202.26 594.18,195.54"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 7 639.83 125.58 637.09 114.95 632.22 96.11 628 80 626.5 74.26 624.84 67.99 623.36 62.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 625.78 61.98 621.62 55.84 621.05 63.24 ",
		pos="e,621.23,54.38 639.83,125.58 637.09,114.95 632.22,96.114 628,80 626.5,74.263 624.84,67.985 623.36,62.403"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 506.5 80.5 506.5 99.5 625.5 99.5 625.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 566 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="566,90",
		rects="506.5,80.5,625.5,99.5",
		width=1.6528];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 7 577.25 170.53 574.44 163.76 570.79 153.96 569 145 566.52 132.61 565.82 118.32 565.71 107.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 568.16 107.66 565.73 100.65 563.26 107.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 579.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="579.5,135",
		pos="e,565.74,99.141 577.25,170.53 574.44,163.76 570.79,153.96 569,145 566.52,132.61 565.82,118.32 565.71,107.56"];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 560.99 80.71 557.68 75.24 553.24 67.9 549.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.5 60.28 545.78 55.56 547.31 62.82 ",
		pos="e,545,54.265 560.99,80.709 557.68,75.236 553.24,67.899 549.3,61.381"];
}
