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		label=adapters,
		lp="1014.5,247.5",
		pos="e,860.86,228.09 1251.6,268.52 1241.1,265.25 1228.6,261.85 1217,260 1168.5,252.25 1042.3,268.38 996,252 989.71,249.78 990.25,245.33 \
984,243 962.6,235.03 916,230.75 869.27,228.48"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 73.79 268.71 74.68 258.62 76 241.08 76 226 76 226 76 226 76 134 76 111.38 130.73 100.63 179.67 95.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 179.86 97.98 186.59 94.85 179.38 93.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 116 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="116,180",
		pos="e,188.09,94.706 73.788,268.71 74.677,258.62 76,241.08 76,226 76,226 76,226 76,134 76,111.38 130.73,100.63 179.67,95.534"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 973.98 268.66 964.91 265.4 954.07 261.99 944 260 892.43 249.83 875.28 270.3 826 252 819.75 249.68 820.04 245.82 \
814 243 808.93 240.64 803.5 238.59 797.98 236.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 798.71 234.48 791.31 234.84 797.32 239.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 859 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="859,247.5",
		pos="e,789.86,234.41 973.98,268.66 964.91,265.4 954.07,261.99 944,260 892.43,249.83 875.28,270.3 826,252 819.75,249.68 820.04,245.82 \
814,243 808.93,240.64 803.5,238.59 797.98,236.81"];
	stringtie	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1287 80.5 1287 99.5 1347 99.5 1347 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1317 87.5 0 44 9 -StringTie ",
		height=0.27778,
		label=StringTie,
		pos="1317,90",
		rects="1287,80.5,1347,99.5",
		width=0.83333];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 10 1898.8 268.52 1858.65 257.15 1794 237.13 1794 226 1794 226 1794 226 1794 134 1794 90.04 1468.45 89.37 1355.24 \
90.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1355.33 88.01 1348.35 90.53 1355.38 92.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1838.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1838.5,180",
		pos="e,1346.8,90.549 1898.8,268.52 1858.6,257.15 1794,237.13 1794,226 1794,226 1794,226 1794,134 1794,90.037 1468.4,89.365 1355.2,90.461"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1372.15 268.58 1359.94 265.27 1345.38 261.84 1332 260 1300.06 255.62 1072.44 262.61 1042 252 1035.71 249.8 1036.26 \
245.29 1030 243 1000.81 232.31 932.36 227.98 869.4 226.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 869.52 223.91 862.47 226.2 869.41 228.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1051.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1051.5,247.5",
		pos="e,860.95,226.16 1372.1,268.58 1359.9,265.27 1345.4,261.84 1332,260 1300.1,255.62 1072.4,262.61 1042,252 1035.7,249.8 1036.3,245.29 \
1030,243 1000.8,232.31 932.36,227.98 869.4,226.36"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 579.1 268.73 583.56 260.7 591.48 248.89 602 243 606.89 240.26 614.52 237.96 623.76 236.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 623.96 238.48 630.37 234.76 623.04 233.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 638.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="638.5,247.5",
		pos="e,631.86,234.48 579.1,268.73 583.56,260.7 591.48,248.89 602,243 606.89,240.26 614.52,237.96 623.76,236.02"];
	sample_name -> stringtie	[_draw_="c 7 -#000000 B 13 1802.19 268.64 1793.92 265.46 1784.13 262.11 1775 260 1740.38 252.01 1457 261.53 1457 226 1457 226 1457 226 1457 \
134 1457 112.59 1396.42 100.74 1354.96 95.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1355.45 92.73 1348.19 94.26 1354.82 97.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1486 178.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="1486,180",
		pos="e,1346.7,94.069 1802.2,268.64 1793.9,265.46 1784.1,262.11 1775,260 1740.4,252.01 1457,261.53 1457,226 1457,226 1457,226 1457,134 \
1457,112.59 1396.4,100.74 1355,95.139"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 673.72 268.63 673.93 260.98 675.48 249.85 682 243 683.48 241.45 685.09 240.03 686.8 238.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 687.9 240.94 692.57 235.18 685.33 236.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 711 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="711,247.5",
		pos="e,693.85,234.38 673.72,268.63 673.93,260.98 675.48,249.85 682,243 683.48,241.45 685.09,240.03 686.8,238.74"];
	strand -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 221.1 268.5 226.01 265.22 232.02 261.83 238 260 274.38 248.9 374.67 268.39 409 252 413.83 249.69 412.18 245.32 \
417 243 421.59 240.79 524.55 235.65 613.19 231.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 613.05 234.05 619.93 231.28 612.82 229.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 430.5 245.6 0 27 6 -strand ",
		label=strand,
		lp="430.5,247.5",
		pos="e,621.44,231.21 221.1,268.5 226.01,265.22 232.02,261.83 238,260 274.38,248.9 374.67,268.39 409,252 413.83,249.69 412.18,245.32 417,\
243 421.59,240.79 524.55,235.65 613.19,231.59"];
	strand -> generate_qc_metrics	[_draw_="c 7 -#000000 B 10 220.31 268.8 230.64 259.59 245 243.61 245 226 245 226 245 226 245 134 245 125.09 247.06 115.41 249.31 107.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 251.63 108.29 251.38 100.88 246.95 106.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="258.5,180",
		pos="e,251.84,99.432 220.31,268.8 230.64,259.59 245,243.61 245,226 245,226 245,226 245,134 245,125.09 247.06,115.41 249.31,107.49"];
	strand -> kallisto	[_draw_="c 7 -#000000 B 7 222.11 268.54 226.89 265.5 232.54 262.27 238 260 395.22 194.7 594.94 158.17 688.36 143.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 688.48 146.03 695.03 142.54 687.73 141.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 437.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="437.5,202.5",
		pos="e,696.52,142.31 222.11,268.54 226.89,265.5 232.54,262.27 238,260 395.22,194.7 594.94,158.17 688.36,143.57"];
	strand -> stringtie	[_draw_="c 7 -#000000 B 13 221.43 268.53 226.3 265.34 232.19 262 238 260 278.31 246.12 576.47 217.91 619 215 655.61 212.49 1249.5 211.83 \
1279 190 1305.27 170.56 1313.38 130.47 1315.88 107.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1318.31 108.1 1316.5 100.91 1313.43 107.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1309.5 178.1 0 27 6 -strand ",
		label=strand,
		lp="1309.5,180",
		pos="e,1316.6,99.404 221.43,268.53 226.3,265.34 232.19,262 238,260 278.31,246.12 576.47,217.91 619,215 655.61,212.49 1249.5,211.83 1279,\
190 1305.3,170.56 1313.4,130.47 1315.9,107.72"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 741 215.56 741 201.14 741 171.48 741 152.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 743.45 152.8 741 145.8 738.55 152.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 754 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="754,180",
		pos="e,741,144.28 741,215.56 741,201.14 741,171.48 741,152.73"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 958 170.5 958 189.5 1068 189.5 1068 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1013 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="1013,180",
		rects="958,170.5,1068,189.5",
		width=1.5278];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 7 860.69 222.82 925.8 221.05 995.43 216.83 1007 207 1009.82 204.61 1011.47 201.17 1012.39 197.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.8 198.1 1013.28 190.84 1009.94 197.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1023.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="1023.5,202.5",
		pos="e,1013.5,189.34 860.69,222.82 925.8,221.05 995.43,216.83 1007,207 1009.8,204.61 1011.5,201.17 1012.4,197.59"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 573 125.5 573 144.5 665 144.5 665 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 619 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="619,135",
		rects="573,125.5,665,144.5",
		width=1.2778];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 573.27 128.6 512.23 121.39 403.34 108.52 330.14 99.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 330.59 97.46 323.35 99.07 330.01 102.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 478.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="478.5,112.5",
		pos="e,321.85,98.897 573.27,128.6 512.23,121.39 403.34,108.52 330.14,99.877"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 7 321.88 88.43 368.37 86.36 431.2 80.16 484 63 487.46 61.88 490.97 60.33 494.3 58.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 495.46 60.78 500.36 55.21 493.06 56.51 ",
		pos="e,501.68,54.472 321.88,88.435 368.37,86.359 431.2,80.163 484,63 487.46,61.876 490.97,60.328 494.3,58.62"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 296.09 80.5 336.98 72.05 398.64 59.31 434.45 51.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 434.7 54.35 441.06 50.54 433.71 49.55 ",
		pos="e,442.54,50.23 296.09,80.505 336.98,72.053 398.64,59.306 434.45,51.903"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 4 738.6 125.56 734.49 111.07 726 81.21 720.68 62.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 723.04 61.8 718.77 55.74 718.32 63.14 ",
		pos="e,718.35,54.284 738.6,125.56 734.49,111.07 726,81.205 720.68,62.471"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 4 752.51 125.56 773.44 110.21 817.88 77.62 842.9 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 844.29 61.29 848.48 55.18 841.39 57.34 ",
		pos="e,849.7,54.284 752.51,125.56 773.44,110.21 817.88,77.622 842.9,59.271"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 4 726.81 125.56 700.66 110.02 644.77 76.78 614.14 58.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 615.5 56.53 608.23 55.06 613 60.74 ",
		pos="e,606.93,54.284 726.81,125.56 700.66,110.02 644.77,76.78 614.14,58.57"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 4 785.29 126.16 825.41 119.06 884.72 108.57 928.1 100.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 928.32 103.34 934.79 99.71 927.47 98.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 923.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="923.5,112.5",
		pos="e,936.28,99.445 785.29,126.16 825.41,119.06 884.72,108.57 928.1,100.89"];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1112 125.5 1112 144.5 1250 144.5 1250 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1181 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="1181,135",
		rects="1112,125.5,1250,144.5",
		width=1.9167];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 1170.36 125.56 1151.08 110.28 1110.24 77.9 1087.04 59.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1088.64 57.65 1081.63 55.22 1085.6 61.49 ",
		pos="e,1080.4,54.284 1170.4,125.56 1151.1,110.28 1110.2,77.901 1087,59.509"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 1207.87 125.5 1229.2 118.76 1259.17 109.28 1282.31 101.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1282.81 104.38 1288.74 99.93 1281.33 99.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1270.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1270.5,112.5",
		pos="e,1290.2,99.478 1207.9,125.5 1229.2,118.76 1259.2,109.28 1282.3,101.97"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1321.43 80.71 1324.36 75.24 1328.29 67.9 1331.77 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1333.72 62.93 1334.87 55.6 1329.4 60.62 ",
		pos="e,1335.6,54.265 1321.4,80.709 1324.4,75.236 1328.3,67.899 1331.8,61.381"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1291.71 80.5 1271.81 73.82 1243.92 64.45 1222.22 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1223.09 54.87 1215.67 54.96 1221.53 59.51 ",
		pos="e,1214.2,54.478 1291.7,80.505 1271.8,73.82 1243.9,64.449 1222.2,57.16"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 984 80.71 984 75.59 984 68.85 984 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 986.45 62.78 984 55.78 981.55 62.78 ",
		pos="e,984,54.265 984,80.709 984,75.593 984,68.848 984,62.666"];
	merge -> index_bam	[_draw_="c 7 -#000000 B 7 958.11 173.32 894.71 166.72 787.28 155.4 695 145 687.82 144.19 680.27 143.32 672.82 142.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 673.55 140.07 666.31 141.69 672.98 144.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 852.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="852.5,157.5",
		pos="e,664.81,141.51 958.11,173.32 894.71,166.72 787.28,155.4 695,145 687.82,144.19 680.27,143.32 672.82,142.45"];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 4 1046.19 170.5 1073 163.64 1110.86 153.95 1139.64 146.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1140.24 148.96 1146.41 144.85 1139.02 144.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1121.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1121.5,157.5",
		pos="e,1147.9,144.48 1046.2,170.5 1073,163.64 1110.9,153.95 1139.6,146.59"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1201.5 170.5 1201.5 189.5 1278.5 189.5 1278.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1240 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="1240,180",
		rects="1201.5,170.5,1278.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 7 1228.24 170.75 1224.33 167.99 1219.97 164.88 1216 162 1210.4 157.94 1204.34 153.46 1198.85 149.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1200.59 147.62 1193.51 145.4 1197.66 151.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1249.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="1249.5,157.5",
		pos="e,1192.3,144.5 1228.2,170.75 1224.3,167.99 1220,164.88 1216,162 1210.4,157.94 1204.3,153.46 1198.9,149.38"];
}