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			label=readcount_minimum_base_quality,
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			rects="3148.5,366.5,3333.5,385.5",
			width=2.5694];
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			label=trna_vaf,
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			rects="147.5,366.5,208.5,385.5",
			width=0.84722];
		top_score_metric	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 212.5 366.5 212.5 385.5 313.5 385.5 313.5 366.5 ",
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			label=top_score_metric,
			pos="263,376",
			rects="212.5,366.5,313.5,385.5",
			width=1.4028];
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			fillcolor="#94DDF4",
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			label=transcript_expression_file,
			pos="2859,376",
			rects="2788,366.5,2930,385.5",
			width=1.9722];
	}
	pvacseq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1186 88.5 1186 107.5 1264 107.5 1264 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1225 95.5 0 62 11 -run pVACseq ",
		height=0.27778,
		label="run pVACseq",
		pos="1225,98",
		rects="1186,88.5,1264,107.5",
		width=1.0833];
	tdna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 361.62 366.67 383.19 354.13 421 331.14 421 324 421 324 421 324 421 142 421 103.85 1005.71 99.5 1177.86 99.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1177.71 101.49 1184.71 99.02 1177.7 96.59 ",
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		label=tdna_vaf,
		lp="439,233",
		pos="e,1186.2,99.021 361.62,366.67 383.19,354.13 421,331.14 421,324 421,324 421,324 421,142 421,103.85 1005.7,99.497 1177.9,99.041"];
	add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3098.5 223.5 3098.5 242.5 3241.5 242.5 3241.5 223.5 ",
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		label="add expression info to vcf",
		pos="3170,233",
		rects="3098.5,223.5,3241.5,242.5",
		width=1.9861];
	gene_expression_file -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2991.74 366.67 2988.06 351.15 2982.62 317.42 2998 296 3019.34 266.28 3056.33 250.76 3090.55 242.67 ",
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		label=expression_file,
		lp="3028.5,300.5",
		pos="e,3098.7,240.86 2991.7,366.67 2988.1,351.15 2982.6,317.42 2998,296 3019.3,266.28 3056.3,250.76 3090.6,242.67"];
	downstream_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1561.09 366.72 1549.62 357.68 1534 342.06 1534 324 1534 324 1534 324 1534 142 1534 115.89 1358.68 104.72 1272.16 \
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		label=downstream_sequence_length,
		lp="1597,233",
		pos="e,1263.8,100.42 1561.1,366.72 1549.6,357.68 1534,342.06 1534,324 1534,324 1534,324 1534,142 1534,115.89 1358.7,104.72 1272.2,100.79"];
	tumor_rna_bam_readcount	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3364 313.5 3364 332.5 3504 332.5 3504 313.5 ",
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		fillcolor="#F3CEA1",
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		label="bam_readcount workflow",
		pos="3434,323",
		rects="3364,313.5,3504,332.5",
		width=1.9444];
	rnaseq_bam -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 3385.58 366.58 3394.45 358.78 3407.8 347.04 3418.24 337.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3419.83 339.73 3423.46 333.26 3416.59 336.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3422.5 343.6 0 19 3 -bam ",
		label=bam,
		lp="3422.5,345.5",
		pos="e,3424.6,332.26 3385.6,366.58 3394.4,358.78 3407.8,347.04 3418.2,337.86"];
	peptide_sequence_length -> pvacseq	[_draw_="c 7 -#000000 B 10 1712.45 366.51 1697.7 358.01 1679 343.41 1679 324 1679 324 1679 324 1679 142 1679 101.45 1388.23 98.26 1272.09 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.21 96.16 1265.22 98.63 1272.23 101.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1732 231.1 0 106 23 -peptide_sequence_length ",
		label=peptide_sequence_length,
		lp="1732,233",
		pos="e,1263.7,98.64 1712.4,366.51 1697.7,358.01 1679,343.41 1679,324 1679,324 1679,324 1679,142 1679,101.45 1388.2,98.263 1272.1,98.608"];
	normal_cov -> pvacseq	[_draw_="c 7 -#000000 B 13 531.74 366.77 537.96 357.02 547 340.09 547 324 547 324 547 324 547 142 547 108.81 584.42 122.33 617 116 671.33 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 570.5 231.1 0 47 10 -normal_cov ",
		label=normal_cov,
		lp="570.5,233",
		pos="e,1186.2,99.349 531.74,366.77 537.96,357.02 547,340.09 547,324 547,324 547,324 547,142 547,108.81 584.42,122.33 617,116 671.33,105.45 \
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	netmhc_stab -> pvacseq	[_draw_="c 7 -#000000 B 13 609.1 366.76 611.47 356.73 615 339.24 615 324 615 324 615 324 615 142 615 87.86 680.28 122.74 734 116 818.87 105.35 \
1072.14 100.95 1177.84 99.55 ",
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		label=netmhc_stab,
		lp="641.5,233",
		pos="e,1186.1,99.44 609.1,366.76 611.47,356.73 615,339.24 615,324 615,324 615,324 615,142 615,87.863 680.28,122.74 734,116 818.87,105.35 \
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	add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3098.5 178.5 3098.5 197.5 3241.5 197.5 3241.5 178.5 ",
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		height=0.27778,
		label="add expression info to vcf",
		pos="3170,188",
		rects="3098.5,178.5,3241.5,197.5",
		width=1.9861];
	expression_tool -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 13 3768.56 366.57 3759.95 363.64 3750.1 360.47 3741 358 3705.71 348.43 3580 360.57 3580 324 3580 324 3580 324 3580 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3249.96 187.04 3242.93 189.39 3249.89 191.94 ",
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		label=expression_tool,
		lp="3612,278",
		pos="e,3241.4,189.37 3768.6,366.57 3760,363.64 3750.1,360.47 3741,358 3705.7,348.43 3580,360.57 3580,324 3580,324 3580,324 3580,232 3580,\
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	expression_tool -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 19 3771.52 366.62 3762.35 363.28 3751.3 359.8 3741 358 3667.2 345.12 3478.52 357.68 3404 350 3381.97 347.73 3376.97 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3174.92 250.21 3171.31 243.73 3170.09 251.05 ",
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		label=expression_tool,
		lp="3226,300.5",
		pos="e,3171.1,242.24 3771.5,366.62 3762.3,363.28 3751.3,359.8 3741,358 3667.2,345.12 3478.5,357.68 3404,350 3382,347.73 3377,343.74 3355,\
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	n_threads -> pvacseq	[_draw_="c 7 -#000000 B 13 699.98 366.58 713.95 357.95 732 343.09 732 324 732 324 732 324 732 142 732 85.69 800.14 123.1 856 116 970.93 101.4 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1177.53 101.21 1184.53 98.75 1177.52 96.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 752.5 231.1 0 41 9 -n_threads ",
		label=n_threads,
		lp="752.5,233",
		pos="e,1186,98.745 699.98,366.58 713.95,357.95 732,343.09 732,324 732,324 732,324 732,142 732,85.69 800.14,123.1 856,116 970.93,101.4 \
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	variants_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3934.5 88.5 3934.5 107.5 4075.5 107.5 4075.5 88.5 ",
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		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="4005,98",
		rects="3934.5,88.5,4075.5,107.5",
		width=1.9583];
	variants_to_table_genotype_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4132.02 366.58 4118.05 357.95 4100 343.09 4100 324 4100 324 4100 324 4100 142 4100 126.74 4089.7 116.86 4075.88 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4133 231.1 0 66 15 -genotype_fields ",
		label=genotype_fields,
		lp="4133,233",
		pos="e,4068.4,107.46 4132,366.58 4118.1,357.95 4100,343.09 4100,324 4100,324 4100,324 4100,142 4100,126.74 4089.7,116.86 4075.9,110.49"];
	sample_name -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 13 3120.79 366.57 3129.06 363.38 3138.85 360.04 3148 358 3185.9 349.55 3196.7 356.38 3235 350 3251.69 347.22 3255.31 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3356.04 335.41 3362.76 332.27 3355.55 330.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3287.5 343.6 0 31 6 -sample ",
		label=sample,
		lp="3287.5,345.5",
		pos="e,3364.3,332.12 3120.8,366.57 3129.1,363.38 3138.9,360.04 3148,358 3185.9,349.55 3196.7,356.38 3235,350 3251.7,347.22 3255.3,343.81 \
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	sample_name -> pvacseq	[_draw_="c 7 -#000000 B 13 3090.7 366.58 3085.72 362.08 3079.98 356.2 3076 350 3062.19 328.45 3073.09 315.06 3056 296 3030.6 267.67 2914.3 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.36 96.51 1265.37 98.96 1272.37 101.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3006 231.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="3006,233",
		pos="e,1263.9,98.959 3090.7,366.58 3085.7,362.08 3080,356.2 3076,350 3062.2,328.45 3073.1,315.06 3056,296 3030.6,267.67 2914.3,192.87 \
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	sample_name -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 3093.34 366.69 3085.35 357.14 3074 340.63 3074 324 3074 324 3074 324 3074 232 3074 216.9 3084.02 207.07 3097.58 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3098.48 202.95 3104.03 198.04 3096.63 198.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3103 276.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="3103,278",
		pos="e,3105.4,197.47 3093.3,366.69 3085.4,357.14 3074,340.63 3074,324 3074,324 3074,324 3074,232 3074,216.9 3084,207.07 3097.6,200.68"];
	sample_name -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 10 3102.04 366.61 3104.2 351.56 3110.18 319.36 3124 296 3126.56 291.67 3128.76 291.85 3132 288 3142.43 275.6 3152.93 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3162.17 250.85 3163.93 243.64 3158.06 248.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3153 298.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="3153,300.5",
		pos="e,3164.8,242.37 3102,366.61 3104.2,351.56 3110.2,319.36 3124,296 3126.6,291.67 3128.8,291.85 3132,288 3142.4,275.6 3152.9,260.42 \
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	add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 3194 268.5 3194 287.5 3438 287.5 3438 268.5 ",
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		fillcolor="#F3CEA1",
		height=0.27778,
		label="Add snv and indel bam-readcount files to a vcf",
		pos="3316,278",
		rects="3194,268.5,3438,287.5",
		width=3.3889];
	sample_name -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 13 3121.83 366.65 3129.91 363.63 3139.3 360.38 3148 358 3187.27 347.26 3197.92 348.12 3238 341 3259.29 337.21 3268.25 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3313.66 295.99 3313.48 288.57 3308.99 294.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3331 321.1 0 58 11 -sample_name ",
		label=sample_name,
		lp="3331,323",
		pos="e,3313.9,287.13 3121.8,366.65 3129.9,363.63 3139.3,360.38 3148,358 3187.3,347.26 3197.9,348.12 3238,341 3259.3,337.21 3268.3,345.36 \
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	net_chop_method -> pvacseq	[_draw_="c 7 -#000000 B 10 793.58 366.58 809.91 358.38 830 344.18 830 324 830 324 830 324 830 142 830 107.37 1073.05 100.61 1177.84 99.31 ",
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		label=net_chop_method,
		lp="866.5,233",
		pos="e,1186,99.211 793.58,366.58 809.91,358.38 830,344.18 830,324 830,324 830,324 830,142 830,107.37 1073,100.61 1177.8,99.305"];
	normal_sample_name -> pvacseq	[_draw_="c 7 -#000000 B 10 897.74 366.77 903.96 357.02 913 340.09 913 324 913 324 913 324 913 142 913 115.61 1090.46 104.57 1177.71 100.73 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 958 231.1 0 90 18 -normal_sample_name ",
		label=normal_sample_name,
		lp="958,233",
		pos="e,1186.1,100.37 897.74,366.77 903.96,357.02 913,340.09 913,324 913,324 913,324 913,142 913,115.61 1090.5,104.57 1177.7,100.73"];
	exclude_nas -> pvacseq	[_draw_="c 7 -#000000 B 10 1010.61 366.68 1023.2 357.82 1040 342.53 1040 324 1040 324 1040 324 1040 142 1040 113.69 1123.21 104.01 1178.02 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1065.5 231.1 0 51 11 -exclude_nas ",
		label=exclude_nas,
		lp="1065.5,233",
		pos="e,1186.2,100.25 1010.6,366.68 1023.2,357.82 1040,342.53 1040,324 1040,324 1040,324 1040,142 1040,113.69 1123.2,104.01 1178,100.71"];
	alleles -> pvacseq	[_draw_="c 7 -#000000 B 10 1080.59 366.5 1094.8 357.9 1113 343.15 1113 324 1113 324 1113 324 1113 142 1113 112.46 1147.38 102.45 1178.04 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1177.86 101.88 1184.63 98.87 1177.46 96.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1127 231.1 0 28 7 -alleles ",
		label=alleles,
		lp="1127,233",
		pos="e,1186.1,98.743 1080.6,366.5 1094.8,357.9 1113,343.15 1113,324 1113,324 1113,324 1113,142 1113,112.46 1147.4,102.45 1178,99.403"];
	detect_variants_vcf -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 4 3468.23 366.58 3462.14 359 3453.06 347.71 3445.78 338.65 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3460.5 343.6 0 13 3 -vcf ",
		label=vcf,
		lp="3460.5,345.5",
		pos="e,3440.6,332.26 3468.2,366.58 3462.1,359 3453.1,347.71 3445.8,338.65"];
	trna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1132.02 366.74 1142.05 357.47 1156 341.45 1156 324 1156 324 1156 324 1156 142 1156 127.11 1167.71 117.19 1181.48 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1182.39 112.95 1187.89 107.98 1180.49 108.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1173.5 231.1 0 35 8 -trna_cov ",
		label=trna_cov,
		lp="1173.5,233",
		pos="e,1189.3,107.4 1132,366.74 1142,357.47 1156,341.45 1156,324 1156,324 1156,324 1156,142 1156,127.11 1167.7,117.19 1181.5,110.68"];
	reference_fasta -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3984.41 366.64 3975.51 363.38 3964.89 359.97 3955 358 3872.55 341.59 3636.06 331.11 3512.04 326.58 ",
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		label=reference_fasta,
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		pos="e,3503.7,326.28 3984.4,366.64 3975.5,363.38 3964.9,359.97 3955,358 3872.6,341.59 3636.1,331.11 3512,326.58"];
	reference_fasta -> variants_to_table	[_draw_="c 7 -#000000 B 10 4005 366.7 4005 356.6 4005 339.05 4005 324 4005 324 4005 324 4005 142 4005 133.31 4005 123.63 4005 115.65 ",
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		label=reference,
		lp="4025,233",
		pos="e,4005,107.24 4005,366.7 4005,356.6 4005,339.05 4005,324 4005,324 4005,324 4005,142 4005,133.31 4005,123.63 4005,115.65"];
	tdna_cov -> pvacseq	[_draw_="c 7 -#000000 B 10 1190.65 366.62 1195.68 356.74 1203 339.68 1203 324 1203 324 1203 324 1203 142 1203 131.86 1207.91 121.7 1213.09 \
113.8 ",
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		label=tdna_cov,
		lp="1221.5,233",
		pos="e,1217.8,107.25 1190.6,366.62 1195.7,356.74 1203,339.68 1203,324 1203,324 1203,324 1203,142 1203,131.86 1207.9,121.7 1213.1,113.8"];
	epitope_lengths -> pvacseq	[_draw_="c 7 -#000000 B 10 1263.08 366.66 1257.75 356.81 1250 339.77 1250 324 1250 324 1250 324 1250 142 1250 131.69 1244.56 121.64 1238.75 \
113.85 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1283.5 231.1 0 67 15 -epitope_lengths ",
		label=epitope_lengths,
		lp="1283.5,233",
		pos="e,1233.5,107.39 1263.1,366.66 1257.8,356.81 1250,339.77 1250,324 1250,324 1250,324 1250,142 1250,131.69 1244.6,121.64 1238.8,113.85"];
	phased_proximal_variants_vcf -> pvacseq	[_draw_="c 7 -#000000 B 10 1391.09 366.72 1379.62 357.68 1364 342.06 1364 324 1364 324 1364 324 1364 142 1364 122.31 1312.44 110.65 1272.13 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1425 231.1 0 122 28 -phased_proximal_variants_vcf ",
		label=phased_proximal_variants_vcf,
		lp="1425,233",
		pos="e,1263.7,103.33 1391.1,366.72 1379.6,357.68 1364,342.06 1364,324 1364,324 1364,324 1364,142 1364,122.31 1312.4,110.65 1272.1,104.55"];
	additional_report_columns -> pvacseq	[_draw_="c 7 -#000000 B 10 2026.75 366.51 1979.99 355.59 1907 336.54 1907 324 1907 324 1907 324 1907 142 1907 110.13 1426.24 101.46 1272.01 \
99.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.16 97.06 1265.13 99.42 1272.1 101.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1961.5 231.1 0 109 25 -additional_report_columns ",
		label=additional_report_columns,
		lp="1961.5,233",
		pos="e,1263.6,99.4 2026.8,366.51 1980,355.59 1907,336.54 1907,324 1907,324 1907,324 1907,142 1907,110.13 1426.2,101.46 1272,99.504"];
	variants_to_table_fields -> variants_to_table	[_draw_="c 7 -#000000 B 10 4282.94 366.57 4263.83 358.91 4242 345.45 4242 324 4242 324 4242 324 4242 142 4242 109.15 4152.73 100.43 4083.77 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4253.5 231.1 0 23 6 -fields ",
		label=fields,
		lp="4253.5,233",
		pos="e,4075.5,98.395 4282.9,366.57 4263.8,358.91 4242,345.45 4242,324 4242,324 4242,324 4242,142 4242,109.15 4152.7,100.43 4083.8,98.587"];
	normal_vaf -> pvacseq	[_draw_="c 7 -#000000 B 10 2157.9 366.65 2129.49 354.54 2081 332.61 2081 324 2081 324 2081 324 2081 142 2081 101.17 1451.52 98.74 1272.17 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2104 231.1 0 46 10 -normal_vaf ",
		label=normal_vaf,
		lp="2104,233",
		pos="e,1263.7,98.892 2157.9,366.65 2129.5,354.54 2081,332.61 2081,324 2081,324 2081,324 2081,142 2081,101.17 1451.5,98.745 1272.2,98.883"];
	net_chop_threshold -> pvacseq	[_draw_="c 7 -#000000 B 13 2257.07 366.59 2242.57 358.05 2224 343.34 2224 324 2224 324 2224 324 2224 142 2224 93.87 2057 119.41 2009 116 \
1864.53 105.72 1418.67 100.79 1272.18 99.41 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2264.5 231.1 0 81 18 -net_chop_threshold ",
		label=net_chop_threshold,
		lp="2264.5,233",
		pos="e,1263.8,99.334 2257.1,366.59 2242.6,358.05 2224,343.34 2224,324 2224,324 2224,324 2224,142 2224,93.874 2057,119.41 2009,116 1864.5,\
105.72 1418.7,100.79 1272.2,99.412"];
	minimum_fold_change -> pvacseq	[_draw_="c 7 -#000000 B 13 2384.71 366.61 2372.41 357.69 2356 342.35 2356 324 2356 324 2356 324 2356 142 2356 87.91 2167.98 119.41 2114 116 \
1947.89 105.51 1430.83 100.63 1271.93 99.35 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2402 231.1 0 92 19 -minimum_fold_change ",
		label=minimum_fold_change,
		lp="2402,233",
		pos="e,1263.8,99.287 2384.7,366.61 2372.4,357.69 2356,342.35 2356,324 2356,324 2356,324 2356,142 2356,87.913 2168,119.41 2114,116 1947.9,\
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	readcount_minimum_mapping_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3585.34 366.51 3544.38 359.86 3493.71 351.48 3489 350 3482.8 348.06 3469.85 341.97 3458.08 336.18 ",
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		label=min_mapping_quality,
		lp="3532.5,345.5",
		pos="e,3450.6,332.46 3585.3,366.51 3544.4,359.86 3493.7,351.48 3489,350 3482.8,348.06 3469.9,341.97 3458.1,336.18"];
	prediction_algorithms -> pvacseq	[_draw_="c 7 -#000000 B 13 2517 366.52 2506.42 357.32 2492 341.56 2492 324 2492 324 2492 324 2492 142 2492 84.16 2290.75 119.38 2233 116 \
2042.49 104.85 1445.12 100.36 1272.28 99.27 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2536.5 231.1 0 89 21 -prediction_algorithms ",
		label=prediction_algorithms,
		lp="2536.5,233",
		pos="e,1263.9,99.223 2517,366.52 2506.4,357.32 2492,341.56 2492,324 2492,324 2492,324 2492,142 2492,84.155 2290.7,119.38 2233,116 2042.5,\
104.85 1445.1,100.36 1272.3,99.275"];
	maximum_transcript_support_level -> pvacseq	[_draw_="c 7 -#000000 B 10 2679.57 366.62 2670.13 357.25 2657 341.14 2657 324 2657 324 2657 324 2657 142 2657 106.53 1519.43 100.13 1272.09 \
99.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.2 96.71 1265.19 99.13 1272.18 101.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2728 231.1 0 142 32 -maximum_transcript_support_level ",
		label=maximum_transcript_support_level,
		lp="2728,233",
		pos="e,1263.7,99.124 2679.6,366.62 2670.1,357.25 2657,341.14 2657,324 2657,324 2657,324 2657,142 2657,106.53 1519.4,100.13 1272.1,99.157"];
	add_vep_fields_to_table	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3637.5 35.5 3637.5 54.5 3794.5 54.5 3794.5 35.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3716 42.5 0 141 28 -add VEP annotation to report ",
		height=0.27778,
		label="add VEP annotation to report",
		pos="3716,45",
		rects="3637.5,35.5,3794.5,54.5",
		width=2.1806];
	vep_to_table_fields -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 10 3872.97 366.53 3833.74 353.59 3764 329.76 3764 324 3764 324 3764 324 3764 97 3764 80.89 3751.15 67.8 3738.74 58.91 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3785 208.6 0 42 10 -vep_fields ",
		label=vep_fields,
		lp="3785,210.5",
		pos="e,3732,54.418 3873,366.53 3833.7,353.59 3764,329.76 3764,324 3764,324 3764,324 3764,97 3764,80.893 3751.1,67.8 3738.7,58.914"];
	fasta_size -> pvacseq	[_draw_="c 7 -#000000 B 13 53.92 366.66 59.25 356.81 67 339.77 67 324 67 324 67 324 67 142 67 101.64 114.12 122.16 154 116 255.86 100.28 \
984.55 99.04 1177.97 98.99 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 88 231.1 0 42 10 -fasta_size ",
		label=fasta_size,
		lp="88,233",
		pos="e,1186.2,98.986 53.919,366.66 59.248,356.81 67,339.77 67,324 67,324 67,324 67,142 67,101.64 114.12,122.16 154,116 255.86,100.28 \
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	readcount_minimum_base_quality -> tumor_rna_bam_readcount	[_draw_="c 7 -#000000 B 7 3260.4 366.62 3278.78 358.97 3307.33 347.84 3333 341 3342.96 338.35 3353.6 336.02 3364.09 334.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3364.52 336.42 3370.96 332.75 3363.63 331.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3368.5 343.6 0 71 16 -min_base_quality ",
		label=min_base_quality,
		lp="3368.5,345.5",
		pos="e,3372.5,332.47 3260.4,366.62 3278.8,358.97 3307.3,347.84 3333,341 3343,338.35 3353.6,336.02 3364.1,334.01"];
	trna_vaf -> pvacseq	[_draw_="c 7 -#000000 B 13 124.43 366.62 133.87 357.25 147 341.14 147 324 147 324 147 324 147 142 147 116.16 173.9 122.14 199 116 247.01 \
104.25 982.99 100.09 1177.92 99.2 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 164 231.1 0 34 8 -trna_vaf ",
		label=trna_vaf,
		lp="164,233",
		pos="e,1186.3,99.161 124.43,366.62 133.87,357.25 147,341.14 147,324 147,324 147,324 147,142 147,116.16 173.9,122.14 199,116 247.01,104.25 \
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	expn_val -> pvacseq	[_draw_="c 7 -#000000 B 13 183.47 366.73 189.39 356.95 198 339.98 198 324 198 324 198 324 198 142 198 73.03 282.33 122.47 351 116 513.64 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1177.61 101.44 1184.61 98.99 1177.61 96.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 216 231.1 0 36 8 -expn_val ",
		label=expn_val,
		lp="216,233",
		pos="e,1186.1,98.986 183.47,366.73 189.39,356.95 198,339.98 198,324 198,324 198,324 198,142 198,73.025 282.33,122.47 351,116 513.64,100.69 \
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	top_score_metric -> pvacseq	[_draw_="c 7 -#000000 B 10 275.22 366.79 286.98 357.81 303 342.23 303 324 303 324 303 324 303 142 303 97.74 989.99 97.85 1177.96 98.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1177.74 101.16 1184.75 98.74 1177.76 96.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 338 231.1 0 70 16 -top_score_metric ",
		label=top_score_metric,
		lp="338,233",
		pos="e,1186.3,98.749 275.22,366.79 286.98,357.81 303,342.23 303,324 303,324 303,324 303,142 303,97.737 989.99,97.85 1178,98.709"];
	transcript_expression_file -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 2863.6 366.7 2878.99 339.92 2931.67 255.63 3002 223 3029.51 210.23 3061.74 202.24 3090.58 197.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3090.62 199.73 3097.12 196.17 3089.82 194.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2968.5 276.1 0 61 15 -expression_file ",
		label=expression_file,
		lp="2968.5,278",
		pos="e,3098.6,195.92 2863.6,366.7 2879,339.92 2931.7,255.63 3002,223 3029.5,210.23 3061.7,202.24 3090.6,197.25"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3364.21 313.92 3345.08 311.14 3328.56 307.98 3325 305 3322.07 302.55 3320.1 299.1 3318.76 295.51 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3377 298.6 0 104 23 -indel_bam_readcount_tsv ",
		label=indel_bam_readcount_tsv,
		lp="3377,300.5",
		pos="e,3316.7,287.29 3364.2,313.92 3345.1,311.14 3328.6,307.98 3325,305 3322.1,302.55 3320.1,299.1 3318.8,295.51"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3433.67 313.73 3432.98 307.91 3431.07 300.39 3426 296 3423.19 293.57 3418.73 291.48 3413.19 289.69 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3437.5 298.6 0 13 3 -vcf ",
		label=vcf,
		lp="3437.5,300.5",
		pos="e,3405,287.44 3433.7,313.73 3433,307.91 3431.1,300.39 3426,296 3423.2,293.57 3418.7,291.48 3413.2,289.69"];
	tumor_rna_bam_readcount -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3441.88 313.52 3446.02 308.04 3449.39 301.01 3445 296 3443.23 293.99 3440.69 292.2 3437.53 290.62 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3496 298.6 0 98 21 -snv_bam_readcount_tsv ",
		label=snv_bam_readcount_tsv,
		lp="3496,300.5",
		pos="e,3429.7,287.46 3441.9,313.52 3446,308.04 3449.4,301.01 3445,296 3443.2,293.99 3440.7,292.2 3437.5,290.62"];
	pvacseq -> mhc_i_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1204.19 88.58 1183.31 80.13 1150.98 67.04 1127.67 57.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1128.65 55.36 1121.24 55 1126.81 59.9 ",
		pos="e,1119.8,54.434 1204.2,88.578 1183.3,80.126 1151,67.039 1127.7,57.605"];
	pvacseq -> mhc_i_all_epitopes	[_draw_="c 7 -#000000 B 4 1225 88.58 1225 81.52 1225 71.24 1225 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1227.45 62.78 1225 55.78 1222.55 62.78 ",
		pos="e,1225,54.265 1225,88.578 1225,81.523 1225,71.24 1225,62.547"];
	pvacseq -> mhc_ii_filtered_epitopes	[_draw_="c 7 -#000000 B 4 1245.97 88.58 1267.02 80.13 1299.61 67.04 1323.1 57.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1324.01 59.88 1329.59 55 1322.18 55.33 ",
		pos="e,1331,54.434 1246,88.578 1267,80.126 1299.6,67.039 1323.1,57.605"];
	pvacseq -> combined_filtered_epitopes	[_draw_="c 7 -#000000 B 7 1263.92 90.65 1303.34 84.11 1366.02 73.44 1420 63 1430.89 60.89 1442.58 58.49 1453.57 56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1453.99 58.58 1460.33 54.73 1452.97 53.79 ",
		pos="e,1461.8,54.415 1263.9,90.646 1303.3,84.11 1366,73.438 1420,63 1430.9,60.895 1442.6,58.492 1453.6,56.169"];
	pvacseq -> mhc_ii_all_epitopes	[_draw_="c 7 -#000000 B 7 1263.86 95.53 1329.08 92.55 1464.48 84.2 1577 63 1585.46 61.41 1594.45 59.16 1602.83 56.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1603.46 59.2 1609.5 54.9 1602.1 54.49 ",
		pos="e,1611,54.482 1263.9,95.53 1329.1,92.554 1464.5,84.197 1577,63 1585.5,61.407 1594.4,59.163 1602.8,56.828"];
	pvacseq -> mhc_ii_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1263.88 96.53 1344.57 95.05 1535.89 88.86 1694 63 1704.46 61.29 1715.67 58.88 1726.01 56.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1726.41 58.84 1732.62 54.8 1725.24 54.08 ",
		pos="e,1734.1,54.436 1263.9,96.534 1344.6,95.053 1535.9,88.861 1694,63 1704.5,61.289 1715.7,58.881 1726,56.415"];
	pvacseq -> mhc_i_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1263.7 97.55 1360.38 98.33 1620 96.83 1833 63 1843.19 61.38 1854.08 59.01 1864.13 56.54 ",
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		pos="e,1872.3,54.469 1263.7,97.549 1360.4,98.334 1620,96.831 1833,63 1843.2,61.382 1854.1,59.008 1864.1,56.545"];
	pvacseq -> combined_all_epitopes	[_draw_="c 7 -#000000 B 7 1186.25 95.03 1121.87 91.34 988.97 82.01 878 63 868.02 61.29 857.36 58.93 847.47 56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 848.23 54.18 840.84 54.85 847.03 58.93 ",
		pos="e,839.37,54.484 1186.2,95.027 1121.9,91.342 988.97,82.006 878,63 868.02,61.292 857.36,58.933 847.47,56.515"];
	pvacseq -> combined_ranked_epitopes	[_draw_="c 7 -#000000 B 7 1186.11 90.59 1147.07 84.05 1085.26 73.42 1032 63 1021.25 60.9 1009.7 58.49 998.85 56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 999.55 53.82 992.19 54.74 998.52 58.61 ",
		pos="e,990.71,54.417 1186.1,90.589 1147.1,84.052 1085.3,73.417 1032,63 1021.2,60.897 1009.7,58.495 998.85,56.172"];
	variants_to_table -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3956.95 88.52 3906.11 79.55 3825.96 65.41 3772.22 55.92 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3909.5 73.6 0 13 3 -tsv ",
		label=tsv,
		lp="3909.5,75.5",
		pos="e,3764.2,54.499 3957,88.521 3906.1,79.55 3826,65.405 3772.2,55.921"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3559 133.5 3559 152.5 3621 152.5 3621 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3590 140.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="3590,143",
		rects="3559,133.5,3621,152.5",
		width=0.86111];
	index -> pvacseq	[_draw_="c 7 -#000000 B 7 3559.06 140.31 3469.76 135.52 3203.9 121.8 2983 116 2303.95 98.18 1476.92 98.5 1272.41 98.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.49 96.43 1265.5 98.9 1272.5 101.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3251.5 118.6 0 37 9 -input_vcf ",
		label=input_vcf,
		lp="3251.5,120.5",
		pos="e,1264,98.899 3559.1,140.31 3469.8,135.52 3203.9,121.8 2983,116 2304,98.179 1476.9,98.495 1272.4,98.882"];
	index -> variants_to_table	[_draw_="c 7 -#000000 B 4 3620.85 138.8 3684.95 132.16 3834.22 116.7 3926.67 107.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3926.67 109.58 3933.38 106.42 3926.16 104.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3840.5 118.6 0 13 3 -vcf ",
		label=vcf,
		lp="3840.5,120.5",
		pos="e,3934.9,106.26 3620.9,138.8 3684.9,132.16 3834.2,116.7 3926.7,107.12"];
	index -> add_vep_fields_to_table	[_draw_="c 7 -#000000 B 4 3600.74 133.82 3622.49 117.25 3671.89 79.61 3698.4 59.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3699.64 61.55 3703.72 55.36 3696.67 57.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3665.5 96.1 0 13 3 -vcf ",
		label=vcf,
		lp="3665.5,98",
		pos="e,3704.9,54.438 3600.7,133.82 3622.5,117.25 3671.9,79.611 3698.4,59.409"];
	add_vep_fields_to_table -> annotated_tsv;
	add_transcript_expression_data_to_vcf -> annotated_vcf	[_draw_="c 7 -#000000 B 10 3167.85 178.57 3163.4 163.04 3151.54 130.21 3128 116 3026.48 54.71 2178.27 86.37 2062 63 2055.42 61.68 2048.53 \
59.6 2042.11 57.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2043.13 55.11 2035.71 54.97 2041.42 59.71 ",
		pos="e,2034.3,54.446 3167.9,178.57 3163.4,163.04 3151.5,130.21 3128,116 3026.5,54.709 2178.3,86.371 2062,63 2055.4,61.677 2048.5,59.602 \
2042.1,57.35"];
	add_transcript_expression_data_to_vcf -> index	[_draw_="c 7 -#000000 B 4 3241.25 179.71 3330.53 170.56 3480.38 155.22 3550.98 148 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3550.96 150.46 3557.68 147.31 3550.46 145.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3423.5 163.6 0 13 3 -vcf ",
		label=vcf,
		lp="3423.5,165.5",
		pos="e,3559.2,147.16 3241.2,179.71 3330.5,170.56 3480.4,155.22 3551,148"];
	add_gene_expression_data_to_vcf -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3170 223.71 3170 218.59 3170 211.85 3170 205.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3172.45 205.78 3170 198.78 3167.55 205.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3176.5 208.6 0 13 3 -vcf ",
		label=vcf,
		lp="3176.5,210.5",
		pos="e,3170,197.27 3170,223.71 3170,218.59 3170,211.85 3170,205.67"];
	add_tumor_rna_bam_readcount_to_vcf -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3287.16 268.5 3264.16 261.73 3231.8 252.2 3206.91 244.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3207.64 242.53 3200.24 242.91 3206.26 247.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3262.5 253.6 0 13 3 -vcf ",
		label=vcf,
		lp="3262.5,255.5",
		pos="e,3198.8,242.48 3287.2,268.5 3264.2,261.73 3231.8,252.2 3206.9,244.87"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3246 223.5 3246 242.5 3318 242.5 3318 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3282 230.5 0 56 12 -\"transcript\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"transcript\"",
		pos="3282,233",
		rects="3246,223.5,3318,242.5",
		width=1];
	default1 -> add_transcript_expression_data_to_vcf	[_draw_="c 7 -#000000 B 4 3259.87 223.5 3242.69 216.91 3218.7 207.7 3199.82 200.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3200.91 198.24 3193.49 198.02 3199.15 202.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3256.5 208.6 0 41 9 -data_type ",
		label=data_type,
		lp="3256.5,210.5",
		pos="e,3192.1,197.48 3259.9,223.5 3242.7,216.91 3218.7,207.7 3199.8,200.45"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3442 268.5 3442 287.5 3492 287.5 3492 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3467 275.5 0 34 6 -\"gene\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"gene\"",
		pos="3467,278",
		rects="3442,268.5,3492,287.5",
		width=0.69444];
	default2 -> add_gene_expression_data_to_vcf	[_draw_="c 7 -#000000 B 7 3442.08 268.96 3440.71 268.61 3439.34 268.29 3438 268 3428.69 265.98 3323.12 252.81 3247.3 243.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3247.89 241.08 3240.64 242.65 3247.29 245.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3393.5 253.6 0 41 9 -data_type ",
		label=data_type,
		lp="3393.5,255.5",
		pos="e,3239.1,242.47 3442.1,268.96 3440.7,268.61 3439.3,268.29 3438,268 3428.7,265.98 3323.1,252.81 3247.3,243.47"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 3236.5 313.5 3236.5 332.5 3283.5 332.5 3283.5 313.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3260 320.5 0 31 5 -\"RNA\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"RNA\"",
		pos="3260,323",
		rects="3236.5,313.5,3283.5,332.5",
		width=0.65278];
	default3 -> add_tumor_rna_bam_readcount_to_vcf	[_draw_="c 7 -#000000 B 7 3259.17 313.83 3259.05 308.19 3259.86 300.87 3264 296 3265.22 294.56 3266.57 293.24 3268.02 292.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3269.19 294.19 3273.64 288.25 3266.46 290.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3284.5 298.6 0 41 9 -data_type ",
		label=data_type,
		lp="3284.5,300.5",
		pos="e,3274.9,287.41 3259.2,313.83 3259.1,308.19 3259.9,300.87 3264,296 3265.2,294.56 3266.6,293.24 3268,292.03"];
}