digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 553 413 553 0 ",
		bb="0,0,553,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 545 405 545 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,545,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 97.5 377.5 97.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 57 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="57,368",
			rects="16.5,358.5,97.5,377.5",
			width=1.125];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 102 358.5 102 377.5 170 377.5 170 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 136 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="136,368",
			rects="102,358.5,170,377.5",
			width=0.94444];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 406.5 358.5 406.5 377.5 469.5 377.5 469.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 438 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="438,368",
			rects="406.5,358.5,469.5,377.5",
			width=0.875];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 358.5 333.5 377.5 402.5 377.5 402.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 368 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="368,368",
			rects="333.5,358.5,402.5,377.5",
			width=0.95833];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 473.5 358.5 473.5 377.5 536.5 377.5 536.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 505 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="505,368",
			rects="473.5,358.5,536.5,377.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 174 358.5 174 377.5 252 377.5 252 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 213 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="213,368",
			rects="174,358.5,252,377.5",
			width=1.0833];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 256.5 358.5 256.5 377.5 329.5 377.5 329.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 293 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="293,368",
			rects="256.5,358.5,329.5,377.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 360 8 360 63 480 63 480 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 414 15 0 92 16 -Workflow Outputs ",
			bb="360,8,480,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="414,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 368.5 35.5 368.5 54.5 471.5 54.5 471.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="420,45",
			rects="368.5,35.5,471.5,54.5",
			width=1.4306];
	}
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 374 215.5 374 234.5 466 234.5 466 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="420,225",
		rects="374,215.5,466,234.5",
		width=1.2778];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 59.3 358.74 64.29 342.39 77.78 305.94 103 288 144.5 258.48 286.68 239.64 365.79 231.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 365.97 233.63 372.68 230.46 365.46 228.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 130.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="130.5,292.5",
		pos="e,374.18,230.3 59.295,358.74 64.292,342.39 77.782,305.94 103,288 144.5,258.48 286.68,239.64 365.79,231.18"];
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 229 305.5 229 324.5 321 324.5 321 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 275 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="275,315",
		rects="229,305.5,321,324.5",
		width=1.2778];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 143.82 358.57 151.67 350.65 164.51 339.14 178 333 191.27 326.96 206.46 323.06 220.82 320.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 221.14 322.97 227.66 319.45 220.37 318.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 199.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="199.5,337.5",
		pos="e,229.16,319.21 143.82,358.57 151.67,350.65 164.51,339.14 178,333 191.27,326.96 206.46,323.06 220.82,320.54"];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 10 424.2 358.6 416.44 353.82 406.62 347.67 398 342 392.13 338.14 391.53 335.6 385 333 367.49 326.02 347.35 321.89 \
329.13 319.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 329.65 317.05 322.41 318.63 329.06 321.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 418 335.6 0 40 9 -reference ",
		label=reference,
		lp="418,337.5",
		pos="e,320.91,318.45 424.2,358.6 416.44,353.82 406.62,347.67 398,342 392.13,338.14 391.53,335.6 385,333 367.49,326.02 347.35,321.89 329.13,\
319.45"];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 7 437.36 358.61 436.82 351.72 435.97 341.72 435 333 431.44 300.84 425.87 263.45 422.61 242.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 425.07 242.34 421.57 235.8 420.23 243.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 450 290.6 0 40 9 -reference ",
		label=reference,
		lp="450,292.5",
		pos="e,421.33,234.3 437.36,358.61 436.82,351.72 435.97,341.72 435,333 431.44,300.84 425.87,263.45 422.61,242.47"];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 7 360.64 358.6 353.5 350.94 342.02 339.8 330 333 326.29 330.9 322.29 329.03 318.2 327.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 319.1 325.09 311.69 324.95 317.4 329.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 364 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="364,337.5",
		pos="e,310.27,324.43 360.64,358.6 353.5,350.94 342.02,339.8 330,333 326.29,330.9 322.29,329.03 318.2,327.37"];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 502.33 358.79 497.34 344.01 485.77 312.22 471 288 460.23 270.33 444.79 252.29 433.73 240.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.7 238.78 429.12 235.35 432.12 242.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 494.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="494.5,292.5",
		pos="e,428.09,234.24 502.33,358.79 497.34,344.01 485.77,312.22 471,288 460.23,270.33 444.79,252.29 433.73,240.27"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 214.98 358.64 217.2 351 221.5 339.88 229 333 230.94 331.22 233.09 329.61 235.37 328.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 236.15 330.54 241.16 325.06 233.83 326.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="254.5,337.5",
		pos="e,242.49,324.34 214.98,358.64 217.2,351 221.5,339.88 229,333 230.94,331.22 233.09,329.61 235.37,328.18"];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 4 290.03 358.58 287.51 351.45 283.83 341.02 280.74 332.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.06 331.48 278.42 325.69 278.44 333.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="307,337.5",
		pos="e,277.92,324.26 290.03,358.58 287.51,351.45 283.83,341.02 280.74,332.27"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 276 260.5 276 279.5 308 279.5 308 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="292,270",
		rects="276,260.5,308,279.5",
		width=0.44444];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 307.95 263.64 327.67 257.02 361.71 245.58 387.12 237.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 387.74 239.42 393.6 234.87 386.18 234.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 388.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="388.5,247.5",
		pos="e,395.03,234.39 307.95,263.64 327.67,257.02 361.71,245.58 387.12,237.05"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 389 80.5 389 99.5 451 99.5 451 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="420,90",
		rects="389,80.5,451,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 420 80.71 420 75.59 420 68.85 420 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.45 62.78 420 55.78 417.55 62.78 ",
		pos="e,420,54.265 420,80.709 420,75.593 420,68.848 420,62.666"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 378.5 170.5 378.5 189.5 461.5 189.5 461.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="420,180",
		rects="378.5,170.5,461.5,189.5",
		width=1.1528];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 355.5 125.5 355.5 144.5 484.5 144.5 484.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 420 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="420,135",
		rects="355.5,125.5,484.5,144.5",
		width=1.7917];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 420 170.71 420 165.59 420 158.85 420 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.45 152.78 420 145.78 417.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="426.5,157.5",
		pos="e,420,144.27 420,170.71 420,165.59 420,158.85 420,152.67"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 320.98 312.03 344.47 309.95 369.63 305.7 377 297 394.69 276.12 347.09 271.69 316.16 270.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 316.5 268.5 309.46 270.84 316.42 273.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 404 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="404,292.5",
		pos="e,307.95,270.82 320.98,312.03 344.47,309.95 369.63,305.7 377,297 394.69,276.12 347.09,271.69 316.16,270.94"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 10 229.19 313.09 201.5 311.46 169.88 307.31 161 297 158.39 293.97 158.36 291 161 288 174.62 272.5 233.8 270.39 267.78 \
270.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.69 272.95 274.72 270.57 267.74 268.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 185 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="185,292.5",
		pos="e,276.23,270.58 229.19,313.09 201.5,311.46 169.88,307.31 161,297 158.39,293.97 158.36,291 161,288 174.62,272.5 233.8,270.39 267.78,\
270.51"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 229.08 306.04 218.16 302.1 211.36 296.34 218 288 224.2 280.22 248.8 275.71 267.95 273.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 268.11 275.76 274.78 272.53 267.55 270.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="242,292.5",
		pos="e,276.29,272.35 229.08,306.04 218.16,302.1 211.36,296.34 218,288 224.2,280.22 248.8,275.71 267.95,273.31"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 273.45 305.96 272.8 300.66 272.65 293.67 275 288 275.29 287.29 275.63 286.6 276.01 285.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 277.84 287.56 280.18 280.52 273.96 284.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 299 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="299,292.5",
		pos="e,281.11,279.32 273.45,305.96 272.8,300.66 272.65,293.67 275,288 275.29,287.29 275.63,286.6 276.01,285.92"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 310.48 305.62 314.21 303.39 317.53 300.57 320 297 323.74 291.59 320.38 286.47 314.86 282.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 316.18 280.16 308.96 278.49 313.56 284.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 345 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="345,292.5",
		pos="e,307.68,277.68 310.48,305.62 314.21,303.39 317.53,300.57 320,297 323.74,291.59 320.38,286.47 314.86,282.22"];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 420 125.71 420 120.59 420 113.85 420 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.45 107.78 420 100.78 417.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="426.5,112.5",
		pos="e,420,99.265 420,125.71 420,120.59 420,113.85 420,107.67"];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 420 215.71 420 210.59 420 203.85 420 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 422.45 197.78 420 190.78 417.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="426.5,202.5",
		pos="e,420,189.27 420,215.71 420,210.59 420,203.85 420,197.67"];
}