digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 894 233 894 0 ",
		bb="0,0,894,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 99 170 99 225 886 225 886 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 149 213 0 84 15 -Workflow Inputs ",
			bb="99,170,886,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="149,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 107 178.5 107 197.5 193 197.5 193 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 150 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="150,188",
			rects="107,178.5,193,197.5",
			width=1.1944];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 197.5 178.5 197.5 197.5 254.5 197.5 254.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 226 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="226,188",
			rects="197.5,178.5,254.5,197.5",
			width=0.79167];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 686 178.5 686 197.5 786 197.5 786 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 736 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="736,188",
			rects="686,178.5,786,197.5",
			width=1.3889];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 258.5 178.5 258.5 197.5 369.5 197.5 369.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 314 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="314,188",
			rects="258.5,178.5,369.5,197.5",
			width=1.5417];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 374 178.5 374 197.5 428 197.5 428 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 401 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="401,188",
			rects="374,178.5,428,197.5",
			width=0.75];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 432.5 178.5 432.5 197.5 505.5 197.5 505.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 469 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="469,188",
			rects="432.5,178.5,505.5,197.5",
			width=1.0139];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 510 178.5 510 197.5 584 197.5 584 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 547 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="547,188",
			rects="510,178.5,584,197.5",
			width=1.0278];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 588.5 178.5 588.5 197.5 681.5 197.5 681.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 635 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="635,188",
			rects="588.5,178.5,681.5,197.5",
			width=1.2917];
		segment_filter	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 790.5 178.5 790.5 197.5 877.5 197.5 877.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 834 185.5 0 71 14 -segment_filter ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=segment_filter,
			pos="834,188",
			rects="790.5,178.5,877.5,197.5",
			width=1.2083];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 408 35.5 408 54.5 482 54.5 482 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 445 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="445,45",
			rects="408,35.5,482,54.5",
			width=1.0278];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 486 35.5 486 54.5 614 54.5 614 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 550 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="550,45",
			rects="486,35.5,614,54.5",
			width=1.7778];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 618.5 35.5 618.5 54.5 749.5 54.5 749.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 684 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="684,45",
			rects="618.5,35.5,749.5,54.5",
			width=1.8194];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 155.5 54.5 155.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 86 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="86,45",
			rects="16.5,35.5,155.5,54.5",
			width=1.9306];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 159.5 35.5 159.5 54.5 308.5 54.5 308.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 234 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="234,45",
			rects="159.5,35.5,308.5,54.5",
			width=2.0694];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 312.5 35.5 312.5 54.5 403.5 54.5 403.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 358 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="358,45",
			rects="312.5,35.5,403.5,54.5",
			width=1.2639];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 753.5 35.5 753.5 54.5 820.5 54.5 820.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 787 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="787,45",
			rects="753.5,35.5,820.5,54.5",
			width=0.93056];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 406.5 125.5 406.5 144.5 483.5 144.5 483.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 445 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="445,135",
		rects="406.5,125.5,483.5,144.5",
		width=1.0694];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 160.62 178.57 171.54 170.43 189.41 158.53 207 153 241.46 142.17 339.45 138.2 398.4 136.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.34 139.23 405.29 136.62 398.23 134.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 236.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="236.5,157.5",
		pos="e,406.8,136.59 160.62,178.57 171.54,170.43 189.41,158.53 207,153 241.46,142.17 339.45,138.2 398.4,136.78"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 237.92 178.74 250.15 170.71 270.01 158.91 289 153 324.7 141.89 366.95 137.81 398.48 136.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.25 138.87 405.15 136.15 398.06 133.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="306,157.5",
		pos="e,406.66,136.09 237.92,178.74 250.15,170.71 270.01,158.91 289,153 324.7,141.89 366.95,137.81 398.48,136.41"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 525.5 80.5 525.5 99.5 820.5 99.5 820.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 673 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="673,90",
		rects="525.5,80.5,820.5,99.5",
		width=4.0972];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 735.62 178.64 734.68 166 731.4 141.71 720 125 714.21 116.51 705.56 109.38 697.26 103.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 698.66 101.87 691.41 100.27 696.08 106.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 756.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="756.5,135",
		pos="e,690.13,99.473 735.62,178.64 734.68,166 731.4,141.71 720,125 714.21,116.51 705.56,109.38 697.26,103.88"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 316.36 178.54 319.04 170.61 324.22 159.08 333 153 343.58 145.67 372.6 141.39 398.45 138.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.44 141.42 405.19 138.37 398.01 136.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 372.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="372.5,157.5",
		pos="e,406.7,138.24 316.36,178.54 319.04,170.61 324.22,159.08 333,153 343.58,145.67 372.6,141.39 398.45,138.96"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 404.3 178.77 407.52 171.42 412.97 160.68 420 153 421.09 151.81 422.28 150.66 423.53 149.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 424.85 151.63 428.88 145.41 421.85 147.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 436 155.6 0 32 6 -method ",
		label=method,
		lp="436,157.5",
		pos="e,430.08,144.49 404.3,178.77 407.52,171.42 412.97,160.68 420,153 421.09,151.81 422.28,150.66 423.53,149.56"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 4 465.04 178.58 461.61 171.3 456.57 160.59 452.4 151.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 454.73 150.92 449.53 145.63 450.3 153.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 480 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="480,157.5",
		pos="e,448.89,144.26 465.04,178.58 461.61,171.3 456.57,160.59 452.4,151.73"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 536.68 178.7 524.86 169.25 506.66 154.86 503 153 498.69 150.8 494.05 148.84 489.34 147.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 490.23 144.83 482.82 144.89 488.66 149.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 538.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="538.5,157.5",
		pos="e,481.39,144.4 536.68,178.7 524.86,169.25 506.66,154.86 503,153 498.69,150.8 494.05,148.84 489.34,147.11"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 10 610.29 178.51 598.92 174.2 585.45 168.5 574 162 568.2 158.71 568.16 155.56 562 153 539.9 143.81 513.66 139.47 \
491.63 137.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 492.1 135.04 484.92 136.92 491.71 139.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 606 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="606,157.5",
		pos="e,483.42,136.8 610.29,178.51 598.92,174.2 585.45,168.5 574,162 568.2,158.71 568.16,155.56 562,153 539.9,143.81 513.66,139.47 491.63,\
137.46"];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 638.2 178.55 642.75 166.6 651.38 144.08 659 125 661.35 119.11 663.99 112.66 666.34 106.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 668.5 108.17 668.92 100.76 663.97 106.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="691,135",
		pos="e,669.5,99.363 638.2,178.55 642.75,166.6 651.38,144.08 659,125 661.35,119.11 663.99,112.66 666.34,106.98"];
	segment_filter -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 829.74 178.85 822.4 165.59 806.09 139.37 785 125 769.2 114.23 749.89 106.78 731.78 101.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 732.41 99.31 725.02 99.88 731.15 104.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 835.5 133.1 0 59 14 -segment_filter ",
		label=segment_filter,
		lp="835.5,135",
		pos="e,723.55,99.486 829.74,178.85 822.4,165.59 806.09,139.37 785,125 769.2,114.23 749.89,106.78 731.78,101.67"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 445 125.56 445 111.14 445 81.48 445 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 447.45 62.8 445 55.8 442.55 62.8 ",
		pos="e,445,54.284 445,125.56 445,111.14 445,81.476 445,62.727"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 452.67 125.72 464.54 113.14 488.33 88.81 511 71 516.42 66.74 522.59 62.52 528.4 58.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 529.54 60.98 534.19 55.2 526.95 56.82 ",
		pos="e,535.47,54.395 452.67,125.72 464.54,113.14 488.33,88.814 511,71 516.42,66.737 522.59,62.524 528.4,58.806"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 10 456.98 125.62 478.16 110.83 520.33 81.52 524 80 562.02 64.28 574.79 71.7 615 63 624.23 61 634.12 58.68 643.43 \
56.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 643.77 58.84 649.98 54.79 642.59 54.09 ",
		pos="e,651.45,54.424 456.98,125.62 478.16,110.83 520.33,81.516 524,80 562.02,64.276 574.79,71.703 615,63 624.23,61.002 634.12,58.678 \
643.43,56.402"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 410.58 125.56 344.59 109.39 200.47 74.06 128.56 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 129.43 54.12 122.05 54.84 128.27 58.88 ",
		pos="e,120.58,54.477 410.58,125.56 344.59,109.39 200.47,74.059 128.56,56.434"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 424.77 125.56 386.88 109.76 305.17 75.68 262.01 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 262.97 55.43 255.57 54.99 261.08 59.95 ",
		pos="e,254.17,54.412 424.77,125.56 386.88,109.76 305.17,75.68 262.01,57.683"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 4 436.66 125.56 421.68 110.41 390.09 78.46 371.83 59.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 373.92 58.62 367.25 55.36 370.43 62.06 ",
		pos="e,366.19,54.284 436.66,125.56 421.68,110.41 390.09,78.458 371.83,59.987"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 482.14 125.55 510.69 119.1 547.74 110.86 563 108 576.65 105.44 591.32 102.98 605.34 100.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 605.48 103.22 612.02 99.72 604.72 98.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 578.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="578.5,112.5",
		pos="e,613.51,99.487 482.14,125.55 510.69,119.1 547.74,110.86 563,108 576.65,105.44 591.32,102.98 605.34,100.76"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 483.31 133.39 513.23 132.01 555.54 128.02 591 117 599.16 114.46 600.03 111.1 608 108 613.96 105.68 620.35 103.57 \
626.71 101.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 627.19 104.1 633.27 99.85 625.86 99.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 623 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="623,112.5",
		pos="e,634.72,99.439 483.31,133.39 513.23,132.01 555.54,128.02 591,117 599.16,114.46 600.03,111.1 608,108 613.96,105.68 620.35,103.57 \
626.71,101.69"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 700.34 80.54 715.17 75.76 733.74 69.46 750 63 754 61.41 758.2 59.61 762.26 57.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 763.12 60.1 768.47 54.97 761.08 55.64 ",
		pos="e,769.85,54.337 700.34,80.543 715.17,75.762 733.74,69.46 750,63 754,61.409 758.2,59.613 762.26,57.799"];
}