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		label=strand,
		lp="622.5,247.5",
		pos="e,756.26,231.6 429.1,268.51 434.01,265.24 440.02,261.84 446,260 478.96,249.85 569.91,266.94 601,252 605.82,249.68 604.19,245.35 \
609,243 615.69,239.73 682.71,235.47 747.91,232.03"];
	strand -> kallisto	[_draw_="c 7 -#000000 B 4 421.51 268.6 431.09 245.72 457.75 182 470.3 152 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 472.55 152.98 472.99 145.57 468.03 151.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 463.5 200.6 0 27 6 -strand ",
		label=strand,
		lp="463.5,202.5",
		pos="e,473.58,144.18 421.51,268.6 431.09,245.72 457.75,182 470.3,152"];
	reference_index -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1403.01 268.51 1393.94 265.23 1383.1 261.83 1373 260 1326.18 251.5 1203.86 267.89 1159 252 1152.72 249.77 1153.26 \
245.31 1147 243 1120.86 233.37 1061.1 229.01 1004.33 227.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1004.56 224.66 997.49 226.89 1004.41 229.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1192 245.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="1192,247.5",
		pos="e,995.98,226.84 1403,268.51 1393.9,265.23 1383.1,261.83 1373,260 1326.2,251.5 1203.9,267.89 1159,252 1152.7,249.77 1153.3,245.31 \
1147,243 1120.9,233.37 1061.1,229.01 1004.3,227.1"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1158.37 268.53 1146.14 265.5 1131.99 262.27 1119 260 1087.28 254.46 1076.93 263.86 1047 252 1040.8 249.55 1041.2 \
245.44 1035 243 1027.64 240.1 1015.69 237.66 1001.55 235.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1002.25 233.22 994.99 234.7 1001.59 238.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1075.5 245.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="1075.5,247.5",
		pos="e,993.49,234.5 1158.4,268.53 1146.1,265.5 1132,262.27 1119,260 1087.3,254.46 1076.9,263.86 1047,252 1040.8,249.55 1041.2,245.44 \
1035,243 1027.6,240.1 1015.7,237.66 1001.6,235.6"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1511.81 268.53 1499.68 265.26 1485.26 261.86 1472 260 1445.8 256.33 1258.96 260.79 1234 252 1227.71 249.79 1228.27 \
245.26 1222 243 1201.57 235.63 1093.98 231.16 1004.12 228.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1004.34 226.22 997.28 228.48 1004.21 231.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1243.5 245.6 0 19 3 -bam ",
		label=bam,
		lp="1243.5,247.5",
		pos="e,995.76,228.44 1511.8,268.53 1499.7,265.26 1485.3,261.86 1472,260 1445.8,256.33 1259,260.79 1234,252 1227.7,249.79 1228.3,245.26 \
1222,243 1201.6,235.63 1094,231.16 1004.1,228.67"];
	trimming_adapters -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 1292.31 268.54 1281.85 265.31 1269.46 261.94 1258 260 1226.18 254.61 1143.32 263.04 1113 252 1106.74 249.72 1107.24 \
245.35 1101 243 1082.65 236.1 1044.24 232 1004.28 229.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1004.64 227.13 997.51 229.17 1004.36 232.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1131.5 245.6 0 37 8 -adapters ",
		label=adapters,
		lp="1131.5,247.5",
		pos="e,996,229.08 1292.3,268.54 1281.9,265.31 1269.5,261.94 1258,260 1226.2,254.61 1143.3,263.04 1113,252 1106.7,249.72 1107.2,245.35 \
1101,243 1082.6,236.1 1044.2,232 1004.3,229.56"];
	read_group_fields -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 13 520.99 268.57 530.8 265.42 542.33 262.1 553 260 571.4 256.37 620.28 260.48 637 252 641.77 249.58 640.2 245.37 \
645 243 655.05 238.03 700.2 234.17 747.96 231.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 747.9 233.84 754.75 231 747.63 228.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 681.5 245.6 0 73 17 -read_group_fields ",
		label=read_group_fields,
		lp="681.5,247.5",
		pos="e,756.26,230.91 520.99,268.57 530.8,265.42 542.33,262.1 553,260 571.4,256.37 620.28,260.48 637,252 641.77,249.58 640.2,245.37 645,\
243 655.05,238.03 700.2,234.17 747.96,231.39"];
	ribosomal_intervals -> generate_qc_metrics	[_draw_="c 7 -#000000 B 25 1690.69 268.53 1680.5 265.56 1668.78 262.38 1658 260 1636.02 255.15 1630.11 256.2 1608 252 1441.67 220.39 1403.35 \
195.61 1236 170 1195.43 163.79 1184.48 168.78 1144 162 1113.28 156.86 1105.37 155.39 1076 145 1056.13 137.97 1052.48 133.04 1033 \
125 1012.46 116.53 1007.37 114.05 986 108 977.32 105.55 968.04 103.28 958.95 101.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 959.52 98.88 952.16 99.8 958.49 103.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1384 178.1 0 80 19 -ribosomal_intervals ",
		label=ribosomal_intervals,
		lp="1384,180",
		pos="e,950.68,99.476 1690.7,268.53 1680.5,265.56 1668.8,262.38 1658,260 1636,255.15 1630.1,256.2 1608,252 1441.7,220.39 1403.4,195.61 \
1236,170 1195.4,163.79 1184.5,168.78 1144,162 1113.3,156.86 1105.4,155.39 1076,145 1056.1,137.97 1052.5,133.04 1033,125 1012.5,116.53 \
1007.4,114.05 986,108 977.32,105.55 968.04,103.28 958.95,101.26"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 10 665.53 268.56 686.69 263.77 709.84 257.62 719 252 723.56 249.2 722.25 245.47 727 243 732.33 240.23 740.59 237.91 \
750.54 235.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 750.9 238.38 757.36 234.74 750.04 233.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 759 245.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="759,247.5",
		pos="e,758.85,234.48 665.53,268.56 686.69,263.77 709.84,257.62 719,252 723.56,249.2 722.25,245.47 727,243 732.33,240.23 740.59,237.91 \
750.54,235.96"];
	transcript_to_gene	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 413.5 80.5 413.5 99.5 556.5 99.5 556.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 485 87.5 0 127 26 -Kallisto: TranscriptToGene ",
		height=0.27778,
		label="Kallisto: TranscriptToGene",
		pos="485,90",
		rects="413.5,80.5,556.5,99.5",
		width=1.9861];
	gene_transcript_lookup_table -> transcript_to_gene	[_draw_="c 7 -#000000 B 10 163.72 268.68 173.46 259.36 187 243.3 187 226 187 226 187 226 187 134 187 111.91 316.94 100.24 405.21 94.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.27 97.32 412.11 94.46 404.98 92.43 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 247.5 178.1 0 121 28 -gene_transcript_lookup_table ",
		label=gene_transcript_lookup_table,
		lp="247.5,180",
		pos="e,413.62,94.366 163.72,268.68 173.46,259.36 187,243.3 187,226 187,226 187,226 187,134 187,111.91 316.94,100.24 405.21,94.867"];
	reference_annotation -> stringtie	[_draw_="c 7 -#000000 B 13 1808.83 268.5 1798.19 265.63 1786.1 262.52 1775 260 1735.3 250.99 1595 266.71 1595 226 1595 226 1595 226 1595 \
134 1595 100.49 1354.94 93.07 1259.48 91.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1259.53 89 1252.49 91.34 1259.45 93.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1639.5 178.1 0 89 20 -reference_annotation ",
		label=reference_annotation,
		lp="1639.5,180",
		pos="e,1251,91.314 1808.8,268.5 1798.2,265.63 1786.1,262.52 1775,260 1735.3,250.99 1595,266.71 1595,226 1595,226 1595,226 1595,134 1595,\
100.49 1354.9,93.073 1259.5,91.449"];
	read_group_id -> bam_to_trimmed_fastq_and_hisat_alignments	[_draw_="c 7 -#000000 B 7 759.48 268.58 778.89 258.67 808.69 243.5 810 243 816.29 240.63 823.03 238.47 829.72 236.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 829.96 239.03 836.06 234.81 828.66 234.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 839 245.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="839,247.5",
		pos="e,837.52,234.41 759.48,268.58 778.89,258.67 808.69,243.5 810,243 816.29,240.63 823.03,238.47 829.72,236.55"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 849 170.5 849 189.5 959 189.5 959 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 904 177.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="904,180",
		rects="849,170.5,959,189.5",
		width=1.5278];
	mark_dup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1076 125.5 1076 144.5 1214 144.5 1214 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1145 132.5 0 122 24 -Mark duplicates and Sort ",
		height=0.27778,
		label="Mark duplicates and Sort",
		pos="1145,135",
		rects="1076,125.5,1214,144.5",
		width=1.9167];
	merge -> mark_dup	[_draw_="c 7 -#000000 B 4 951.61 170.5 991.22 163.44 1047.66 153.37 1089.35 145.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1089.53 148.39 1096 144.74 1088.67 143.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1055.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1055.5,157.5",
		pos="e,1097.5,144.48 951.61,170.5 991.22,163.44 1047.7,153.37 1089.4,145.93"];
	index_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 858 125.5 858 144.5 950 144.5 950 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 904 132.5 0 76 14 -samtools index ",
		height=0.27778,
		label="samtools index",
		pos="904,135",
		rects="858,125.5,950,144.5",
		width=1.2778];
	merge -> index_bam	[_draw_="c 7 -#000000 B 4 904 170.71 904 165.59 904 158.85 904 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 906.45 152.78 904 145.78 901.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 913.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="913.5,157.5",
		pos="e,904,144.27 904,170.71 904,165.59 904,158.85 904,152.67"];
	transcript_to_gene -> gene_abundance	[_draw_="c 7 -#000000 B 4 494.64 80.71 501.56 74.76 511.04 66.61 519.07 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 520.53 61.67 524.24 55.25 517.34 57.96 ",
		pos="e,525.39,54.265 494.64,80.709 501.56,74.76 511.04,66.609 519.07,59.701"];
	generate_qc_metrics -> chart	[_draw_="c 7 -#000000 B 4 894.17 80.71 887.11 74.76 877.44 66.61 869.25 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 870.89 57.88 863.96 55.24 867.73 61.63 ",
		pos="e,862.8,54.265 894.17,80.709 887.11,74.76 877.44,66.609 869.25,59.701"];
	generate_qc_metrics -> metrics	[_draw_="c 7 -#000000 B 4 904 80.71 904 75.59 904 68.85 904 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 906.45 62.78 904 55.78 901.55 62.78 ",
		pos="e,904,54.265 904,80.709 904,75.593 904,68.848 904,62.666"];
	stringtie -> stringtie_transcript_gtf	[_draw_="c 7 -#000000 B 4 1191.14 80.61 1166.78 73.76 1132.24 64.05 1105.93 56.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1106.91 54.39 1099.51 54.85 1105.58 59.11 ",
		pos="e,1098,54.445 1191.1,80.607 1166.8,73.763 1132.2,64.053 1105.9,56.66"];
	stringtie -> stringtie_gene_expression_tsv	[_draw_="c 7 -#000000 B 4 1220.61 80.71 1220.38 75.59 1220.06 68.85 1219.78 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1222.23 62.66 1219.45 55.78 1217.33 62.88 ",
		pos="e,1219.4,54.265 1220.6,80.709 1220.4,75.593 1220.1,68.848 1219.8,62.666"];
	mark_dup -> final_bam	[_draw_="c 7 -#000000 B 4 1127.93 125.56 1096.17 109.86 1027.89 76.1 991.32 58.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 992.73 55.99 985.37 55.08 990.56 60.38 ",
		pos="e,984.02,54.412 1127.9,125.56 1096.2,109.86 1027.9,76.105 991.32,58.021"];
	mark_dup -> stringtie	[_draw_="c 7 -#000000 B 4 1160.02 125.5 1171.05 119.26 1186.22 110.68 1198.68 103.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1199.81 105.8 1204.7 100.22 1197.4 101.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1198.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="1198.5,112.5",
		pos="e,1206,99.478 1160,125.5 1171,119.26 1186.2,110.68 1198.7,103.63"];
	bam_to_trimmed_fastq_and_hisat_alignments -> merge	[_draw_="c 7 -#000000 B 4 881.4 215.71 884.96 210.24 889.74 202.9 893.98 196.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 896.03 197.74 897.79 190.53 891.92 195.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 903.5 200.6 0 23 4 -bams ",
		label=bams,
		lp="903.5,202.5",
		pos="e,898.62,189.27 881.4,215.71 884.96,210.24 889.74,202.9 893.98,196.38"];
	bam_to_trimmed_fastq_and_hisat_alignments -> kallisto	[_draw_="c 7 -#000000 B 4 837.74 215.56 764.1 199.32 602.92 163.77 523.34 146.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 524.28 143.92 516.91 144.8 523.22 148.7 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 729 178.1 0 26 6 -fastqs ",
		label=fastqs,
		lp="729,180",
		pos="e,515.43,144.48 837.74,215.56 764.1,199.32 602.92,163.77 523.34,146.22"];
	index_bam -> generate_qc_metrics	[_draw_="c 7 -#000000 B 4 904 125.71 904 120.59 904 113.85 904 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 906.45 107.78 904 100.78 901.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 913.5 110.6 0 19 3 -bam ",
		label=bam,
		lp="913.5,112.5",
		pos="e,904,99.265 904,125.71 904,120.59 904,113.85 904,107.67"];
	kallisto -> fusion_evidence	[_draw_="c 7 -#000000 B 10 521.5 128.57 536.79 125.88 551.45 122.09 557 117 572.75 102.55 556.4 86.61 571 71 573.55 68.28 588.61 62.49 603.7 \
57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 604.29 59.55 610.09 54.94 602.68 54.92 ",
		pos="e,611.52,54.443 521.5,128.57 536.79,125.88 551.45,122.09 557,117 572.75,102.55 556.4,86.606 571,71 573.55,68.276 588.61,62.487 603.7,\
57.165"];
	kallisto -> transcript_abundance_h5	[_draw_="c 7 -#000000 B 10 521.42 127.71 535.27 125.12 550.45 121.61 564 117 572.47 114.12 573.76 111.49 582 108 630.09 87.65 687.39 68.47 \
723.49 56.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 723.92 59.4 729.86 54.96 722.45 54.73 ",
		pos="e,731.3,54.5 521.42,127.71 535.27,125.12 550.45,121.61 564,117 572.47,114.12 573.76,111.49 582,108 630.09,87.652 687.39,68.467 723.49,\
56.973"];
	kallisto -> transcript_abundance_tsv	[_draw_="c 7 -#000000 B 7 447.24 125.51 434.5 120.29 420.8 112.19 413 100 405.97 89.01 405.69 74.06 406.9 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 409.29 63.22 407.87 55.94 404.44 62.52 ",
		pos="e,408.09,54.446 447.24,125.51 434.5,120.29 420.8,112.19 413,100 405.97,89.015 405.69,74.057 406.9,62.669"];
	kallisto -> transcript_to_gene	[_draw_="c 7 -#000000 B 7 478.1 125.77 478.82 120.65 479.85 113.92 481 108 481.03 107.82 481.07 107.64 481.11 107.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 483.47 108.11 482.59 100.75 478.69 107.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 520.5 110.6 0 79 19 -transcript_table_h5 ",
		label=transcript_table_h5,
		lp="520.5,112.5",
		pos="e,482.92,99.273 478.1,125.77 478.82,120.65 479.85,113.92 481,108 481.03,107.82 481.07,107.64 481.11,107.46"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1106.5 170.5 1106.5 189.5 1183.5 189.5 1183.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1145 177.5 0 61 12 -\"coordinate\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"coordinate\"",
		pos="1145,180",
		rects="1106.5,170.5,1183.5,189.5",
		width=1.0694];
	default1 -> mark_dup	[_draw_="c 7 -#000000 B 4 1145 170.71 1145 165.59 1145 158.85 1145 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1147.45 152.78 1145 145.78 1142.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1178.5 155.6 0 67 16 -input_sort_order ",
		label=input_sort_order,
		lp="1178.5,157.5",
		pos="e,1145,144.27 1145,170.71 1145,165.59 1145,158.85 1145,152.67"];
}