digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 368 1589 368 1589 0 ",
		bb="0,0,1589,368",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 305 8 360 1473 360 1473 305 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 348 0 84 15 -Workflow Inputs ",
			bb="8,305,1473,360",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,350.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		assay_non_cpg_sites	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1248.5 313.5 1248.5 332.5 1367.5 332.5 1367.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1308 320.5 0 103 19 -assay_non_cpg_sites ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=assay_non_cpg_sites,
			pos="1308,323",
			rects="1248.5,313.5,1367.5,332.5",
			width=1.6528];
		trimming_adapter_min_overlap	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 755 313.5 755 332.5 925 332.5 925 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 840 320.5 0 154 28 -trimming_adapter_min_overlap ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_min_overlap,
			pos="840,323",
			rects="755,313.5,925,332.5",
			width=2.3611];
		instrument_data_bams	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 929.5 313.5 929.5 332.5 1058.5 332.5 1058.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 994 320.5 0 113 20 -instrument_data_bams ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=instrument_data_bams,
			pos="994,323",
			rects="929.5,313.5,1058.5,332.5",
			width=1.7917];
		read_group_id	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 106 313.5 106 332.5 192 332.5 192 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 149 320.5 0 70 13 -read_group_id ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=read_group_id,
			pos="149,323",
			rects="106,313.5,192,332.5",
			width=1.1944];
		reference_index	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1149.5 313.5 1149.5 332.5 1244.5 332.5 1244.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1197 320.5 0 79 15 -reference_index ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_index,
			pos="1197,323",
			rects="1149.5,313.5,1244.5,332.5",
			width=1.3194];
		QCannotation	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1062.5 313.5 1062.5 332.5 1145.5 332.5 1145.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1104 320.5 0 67 12 -QCannotation ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=QCannotation,
			pos="1104,323",
			rects="1062.5,313.5,1145.5,332.5",
			width=1.1528];
		trimming_max_uncalled	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 196.5 313.5 196.5 332.5 331.5 332.5 331.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 264 320.5 0 119 21 -trimming_max_uncalled ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_max_uncalled,
			pos="264,323",
			rects="196.5,313.5,331.5,332.5",
			width=1.875];
		trimming_adapter_trim_end	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 335.5 313.5 335.5 332.5 488.5 332.5 488.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 412 320.5 0 137 25 -trimming_adapter_trim_end ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapter_trim_end,
			pos="412,323",
			rects="335.5,313.5,488.5,332.5",
			width=2.125];
		trimming_adapters	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 493 313.5 493 332.5 603 332.5 603 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 548 320.5 0 94 17 -trimming_adapters ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_adapters,
			pos="548,323",
			rects="493,313.5,603,332.5",
			width=1.5278];
		reference_sizes	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1371.5 313.5 1371.5 332.5 1464.5 332.5 1464.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1418 320.5 0 77 15 -reference_sizes ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_sizes,
			pos="1418,323",
			rects="1371.5,313.5,1464.5,332.5",
			width=1.2917];
		trimming_min_readlength	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 607.5 313.5 607.5 332.5 750.5 332.5 750.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 679 320.5 0 127 23 -trimming_min_readlength ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimming_min_readlength,
			pos="679,323",
			rects="607.5,313.5,750.5,332.5",
			width=1.9861];
		sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 313.5 16 332.5 102 332.5 102 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 59 320.5 0 70 11 -sample_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=sample_name,
			pos="59,323",
			rects="16,313.5,102,332.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 962 8 962 63 1288 63 1288 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 1016 15 0 92 16 -Workflow Outputs ",
			bb="962,8,1288,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="1016,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1129 35.5 1129 54.5 1161 54.5 1161 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1145 42.5 0 16 3 -vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=vcf,
			pos="1145,45",
			rects="1129,35.5,1161,54.5",
			width=0.44444];
		cpgs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1165.5 35.5 1165.5 54.5 1204.5 54.5 1204.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1185 42.5 0 23 4 -cpgs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpgs,
			pos="1185,45",
			rects="1165.5,35.5,1204.5,54.5",
			width=0.54167];
		cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 970.5 35.5 970.5 54.5 1011.5 54.5 1011.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 991 42.5 0 25 4 -cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cram,
			pos="991,45",
			rects="970.5,35.5,1011.5,54.5",
			width=0.56944];
		gathered_directory	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1015.5 35.5 1015.5 54.5 1124.5 54.5 1124.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1070 42.5 0 93 18 -gathered_directory ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=gathered_directory,
			pos="1070,45",
			rects="1015.5,35.5,1124.5,54.5",
			width=1.5139];
		cpg_bigwig	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1208.5 35.5 1208.5 54.5 1279.5 54.5 1279.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1244 42.5 0 55 10 -cpg_bigwig ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cpg_bigwig,
			pos="1244,45",
			rects="1208.5,35.5,1279.5,54.5",
			width=0.98611];
	}
	vcf2bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1135 125.5 1135 144.5 1517 144.5 1517 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1326 132.5 0 366 77 -convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script ",
		height=0.27778,
		label="convert a biscuit pileup vcf to a bed and bedgraph file, via a wrapper script",
		pos="1326,135",
		rects="1135,125.5,1517,144.5",
		width=5.3056];
	assay_non_cpg_sites -> vcf2bed	[_draw_="c 7 -#000000 B 10 1308.53 313.7 1309.12 303.61 1310 286.06 1310 271 1310 271 1310 271 1310 179 1310 169.54 1313.44 159.61 1317.13 \
151.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1319.24 152.92 1320.25 145.58 1314.88 150.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1353 223.1 0 86 19 -assay_non_cpg_sites ",
		label=assay_non_cpg_sites,
		lp="1353,225",
		pos="e,1320.9,144.23 1308.5,313.7 1309.1,303.61 1310,286.06 1310,271 1310,271 1310,271 1310,179 1310,169.54 1313.4,159.61 1317.1,151.67"];
	bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 557.5 260.5 557.5 279.5 800.5 279.5 800.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 679 267.5 0 227 44 -bam to trimmed fastqs and biscuit alignments ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="bam to trimmed fastqs and biscuit alignments",
		pos="679,270",
		rects="557.5,260.5,800.5,279.5",
		width=3.375];
	trimming_adapter_min_overlap -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 818.06 313.63 798.72 306.4 769.69 295.89 744 288 736.79 285.79 729.08 283.61 721.58 281.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 722.42 279.27 715.02 279.85 721.16 284.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 813 290.6 0 86 19 -adapter_min_overlap ",
		label=adapter_min_overlap,
		lp="813,292.5",
		pos="e,713.56,279.46 818.06,313.63 798.72,306.4 769.69,295.89 744,288 736.79,285.79 729.08,283.61 721.58,281.59"];
	instrument_data_bams -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 960.11 313.5 949.22 310.78 937.1 307.76 926 305 895.35 297.39 888.14 293.29 857 288 839.35 285 820.62 282.49 802.19 \
280.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 802.48 277.97 795.26 279.63 801.95 282.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 905.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="905.5,292.5",
		pos="e,793.75,279.47 960.11,313.5 949.22,310.78 937.1,307.76 926,305 895.35,297.39 888.14,293.29 857,288 839.35,285 820.62,282.49 802.19,\
280.4"];
	read_group_id -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 169.3 313.6 177.48 310.5 187.07 307.21 196 305 249.58 291.76 264.05 293.08 319 288 395.18 280.95 480.72 276.76 \
549.3 274.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 549.16 276.76 556.07 274.06 548.98 271.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 348 290.6 0 58 13 -read_group_id ",
		label=read_group_id,
		lp="348,292.5",
		pos="e,557.58,274.01 169.3,313.6 177.48,310.5 187.07,307.21 196,305 249.58,291.76 264.05,293.08 319,288 395.18,280.95 480.72,276.76 549.3,\
274.3"];
	reference_index -> vcf2bed	[_draw_="c 7 -#000000 B 10 1217.58 313.58 1233.91 305.38 1254 291.18 1254 271 1254 271 1254 271 1254 179 1254 163.87 1265.86 153.94 1279.95 \
147.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1280.52 149.9 1286.07 144.98 1278.66 145.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1274 223.1 0 40 9 -reference ",
		label=reference,
		lp="1274,225",
		pos="e,1287.5,144.41 1217.6,313.58 1233.9,305.38 1254,291.18 1254,271 1254,271 1254,271 1254,179 1254,163.87 1265.9,153.94 1279.9,147.48"];
	bam_to_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 888 170.5 888 189.5 1028 189.5 1028 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 958 177.5 0 124 22 -BAM to CRAM conversion ",
		height=0.27778,
		label="BAM to CRAM conversion",
		pos="958,180",
		rects="888,170.5,1028,189.5",
		width=1.9444];
	reference_index -> bam_to_cram	[_draw_="c 7 -#000000 B 13 1169.67 313.52 1158.45 309.4 1145.63 303.85 1135 297 1101.44 275.37 1092.06 268.28 1070 235 1060.29 220.35 1069.56 \
209.2 1056 198 1053.32 195.78 1042.59 193.27 1029.16 190.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1029.79 188.5 1022.47 189.74 1028.96 193.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1101 245.6 0 40 9 -reference ",
		label=reference,
		lp="1101,247.5",
		pos="e,1021,189.48 1169.7,313.52 1158.5,309.4 1145.6,303.85 1135,297 1101.4,275.37 1092.1,268.28 1070,235 1060.3,220.35 1069.6,209.2 \
1056,198 1053.3,195.78 1042.6,193.27 1029.2,190.88"];
	bisulfite_qc	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1019.5 125.5 1019.5 144.5 1120.5 144.5 1120.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1070 132.5 0 85 18 -Bisulfite QC tools ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Bisulfite QC tools",
		pos="1070,135",
		rects="1019.5,125.5,1120.5,144.5",
		width=1.4028];
	reference_index -> bisulfite_qc	[_draw_="c 7 -#000000 B 13 1190.62 313.72 1179.23 298.66 1155.06 265.52 1139 235 1134.54 226.53 1136.56 222.79 1131 215 1121.11 201.15 1112.93 \
203.05 1102 190 1092.09 178.17 1083.35 162.9 1077.52 151.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1079.82 150.73 1074.49 145.57 1075.44 152.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1159 223.1 0 40 9 -reference ",
		label=reference,
		lp="1159,225",
		pos="e,1073.8,144.22 1190.6,313.72 1179.2,298.66 1155.1,265.52 1139,235 1134.5,226.53 1136.6,222.79 1131,215 1121.1,201.15 1112.9,203.05 \
1102,190 1092.1,178.17 1083.4,162.9 1077.5,151.62"];
	pileup	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1102.5 170.5 1102.5 189.5 1185.5 189.5 1185.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1144 177.5 0 67 14 -Biscuit pileup ",
		height=0.27778,
		label="Biscuit pileup",
		pos="1144,180",
		rects="1102.5,170.5,1185.5,189.5",
		width=1.1528];
	reference_index -> pileup	[_draw_="c 7 -#000000 B 7 1197.44 313.66 1198.06 294.86 1197.56 248.27 1180 215 1175.85 207.13 1169.17 200.07 1162.68 194.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1164.52 192.78 1157.54 190.28 1161.44 196.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1212 245.6 0 40 9 -reference ",
		label=reference,
		lp="1212,247.5",
		pos="e,1156.4,189.32 1197.4,313.66 1198.1,294.86 1197.6,248.27 1180,215 1175.8,207.13 1169.2,200.07 1162.7,194.44"];
	reference_index -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 13 1175.99 313.63 1166.91 310.37 1156.08 306.96 1146 305 1089.17 293.98 1073.72 301.37 1016 297 971.5 293.63 960.48 \
291.6 916 288 881.17 285.18 843.44 282.37 808.54 279.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 808.88 277.43 801.72 279.38 808.53 282.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1049 290.6 0 66 15 -reference_index ",
		label=reference_index,
		lp="1049,292.5",
		pos="e,800.21,279.27 1176,313.63 1166.9,310.37 1156.1,306.96 1146,305 1089.2,293.98 1073.7,301.37 1016,297 971.5,293.63 960.48,291.6 \
916,288 881.17,285.18 843.44,282.37 808.54,279.87"];
	QCannotation -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1095.16 313.5 1086.31 304.04 1074 287.85 1074 271 1074 271 1074 271 1074 179 1074 170.27 1073.17 160.59 1072.27 \
152.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1074.71 152.37 1071.41 145.72 1069.85 152.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1102.5 223.1 0 57 12 -QCannotation ",
		label=QCannotation,
		lp="1102.5,225",
		pos="e,1071.2,144.22 1095.2,313.5 1086.3,304.04 1074,287.85 1074,271 1074,271 1074,271 1074,179 1074,170.27 1073.2,160.59 1072.3,152.62"];
	trimming_max_uncalled -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 10 297.59 313.53 309.66 310.63 323.4 307.49 336 305 382.8 295.73 394.6 293.49 442 288 476.71 283.98 514.4 280.76 \
549.3 278.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 549.31 280.7 556.12 277.76 548.97 275.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 470.5 290.6 0 57 12 -max_uncalled ",
		label=max_uncalled,
		lp="470.5,292.5",
		pos="e,557.63,277.66 297.59,313.53 309.66,310.63 323.4,307.49 336,305 382.8,295.73 394.6,293.49 442,288 476.71,283.98 514.4,280.76 549.3,\
278.25"];
	trimming_adapter_trim_end -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 7 439.46 313.53 465.21 305.86 504.89 294.78 540 288 554.84 285.14 570.67 282.66 586.13 280.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 586.06 283.03 592.68 279.68 585.41 278.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 576 290.6 0 72 16 -adapter_trim_end ",
		label=adapter_trim_end,
		lp="576,292.5",
		pos="e,594.18,279.49 439.46,313.53 465.21,305.86 504.89,294.78 540,288 554.84,285.14 570.67,282.66 586.13,280.55"];
	trimming_adapters -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 569.63 313.58 591.44 305.09 625.25 291.92 649.51 282.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 650.29 284.81 655.93 279.98 648.51 280.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 650.5 290.6 0 37 8 -adapters ",
		label=adapters,
		lp="650.5,292.5",
		pos="e,657.34,279.43 569.63,313.58 591.44,305.09 625.25,291.92 649.51,282.48"];
	bedgraph_to_bigwig	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1242 80.5 1242 99.5 1410 99.5 1410 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1326 87.5 0 152 29 -bedGraph to bigwig conversion ",
		height=0.27778,
		label="bedGraph to bigwig conversion",
		pos="1326,90",
		rects="1242,80.5,1410,99.5",
		width=2.3333];
	reference_sizes -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 10 1464.49 317.51 1492.97 311.89 1524 299.28 1524 271 1524 271 1524 271 1524 134 1524 110.46 1469.88 99.78 1418.23 \
94.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1418.67 92.53 1411.48 94.36 1418.24 97.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1556.5 200.6 0 65 15 -reference_sizes ",
		label=reference_sizes,
		lp="1556.5,202.5",
		pos="e,1410,94.223 1464.5,317.51 1493,311.89 1524,299.28 1524,271 1524,271 1524,271 1524,134 1524,110.46 1469.9,99.781 1418.2,94.949"];
	trimming_min_readlength -> bam_to_trimmed_fastq_and_biscuit_alignments	[_draw_="c 7 -#000000 B 4 679 313.58 679 306.52 679 296.24 679 287.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 681.45 287.78 679 280.78 676.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 711 290.6 0 64 14 -min_readlength ",
		label=min_readlength,
		lp="711,292.5",
		pos="e,679,279.26 679,313.58 679,306.52 679,296.24 679,287.55"];
	vcf2bed -> cpgs	[_draw_="c 7 -#000000 B 7 1296.33 125.53 1279.07 119.83 1257.37 111.29 1240 100 1223.31 89.15 1207.44 72.67 1197.07 60.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1199.02 59.28 1192.62 55.52 1195.28 62.45 ",
		pos="e,1191.6,54.369 1296.3,125.53 1279.1,119.83 1257.4,111.29 1240,100 1223.3,89.149 1207.4,72.669 1197.1,60.769"];
	vcf2bed -> bedgraph_to_bigwig	[_draw_="c 7 -#000000 B 4 1326 125.71 1326 120.59 1326 113.85 1326 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1328.45 107.78 1326 100.78 1323.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1372.5 110.6 0 93 20 -methylation_bedgraph ",
		label=methylation_bedgraph,
		lp="1372.5,112.5",
		pos="e,1326,99.265 1326,125.71 1326,120.59 1326,113.85 1326,107.67"];
	index_cram	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 916.5 80.5 916.5 99.5 1035.5 99.5 1035.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 976 87.5 0 103 19 -samtools index cram ",
		height=0.27778,
		label="samtools index cram",
		pos="976,90",
		rects="916.5,80.5,1035.5,99.5",
		width=1.6528];
	index_cram -> cram	[_draw_="c 7 -#000000 B 4 978.89 80.71 980.72 75.47 983.14 68.53 985.34 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 987.63 63.11 987.62 55.69 983 61.5 ",
		pos="e,988.12,54.265 978.89,80.709 980.72,75.474 983.14,68.534 985.34,62.235"];
	bedgraph_to_bigwig -> cpg_bigwig	[_draw_="c 7 -#000000 B 4 1309.8 80.5 1297.67 74.14 1280.9 65.35 1267.33 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1268.84 56.26 1261.51 55.18 1266.57 60.6 ",
		pos="e,1260.2,54.478 1309.8,80.505 1297.7,74.144 1280.9,65.351 1267.3,58.233"];
	bam_to_cram -> index_cram	[_draw_="c 7 -#000000 B 4 959.73 170.56 962.69 156.07 968.8 126.21 972.63 107.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 975 108.12 974 100.77 970.2 107.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 978.5 133.1 0 21 4 -cram ",
		label=cram,
		lp="978.5,135",
		pos="e,974.31,99.284 959.73,170.56 962.69,156.07 968.8,126.21 972.63,107.47"];
	merge	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 932 215.5 932 234.5 1042 234.5 1042 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 987 222.5 0 94 15 -Sambamba: merge ",
		height=0.27778,
		label="Sambamba: merge",
		pos="987,225",
		rects="932,215.5,1042,234.5",
		width=1.5278];
	merge -> bam_to_cram	[_draw_="c 7 -#000000 B 4 981.41 215.71 977.64 210.12 972.55 202.58 968.09 195.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 970.37 194.95 964.42 190.52 966.3 197.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 984.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="984.5,202.5",
		pos="e,963.57,189.27 981.41,215.71 977.64,210.12 972.55,202.58 968.09,195.96"];
	merge -> bisulfite_qc	[_draw_="c 7 -#000000 B 7 998.35 215.66 1006.92 209.12 1018.73 199.56 1028 190 1039.93 177.69 1051.77 162.09 1059.81 150.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1061.63 152.5 1063.65 145.37 1057.62 149.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1054.5 178.1 0 19 3 -bam ",
		label=bam,
		lp="1054.5,180",
		pos="e,1064.5,144.13 998.35,215.66 1006.9,209.12 1018.7,199.56 1028,190 1039.9,177.69 1051.8,162.09 1059.8,150.82"];
	merge -> pileup	[_draw_="c 7 -#000000 B 4 1018.02 215.5 1042.96 208.67 1078.15 199.03 1105 191.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1105.48 194.09 1111.59 189.88 1104.19 189.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1088.5 200.6 0 19 3 -bam ",
		label=bam,
		lp="1088.5,202.5",
		pos="e,1113,189.48 1018,215.5 1043,208.67 1078.2,199.03 1105,191.68"];
	bisulfite_qc -> gathered_directory	[_draw_="c 7 -#000000 B 4 1070 125.56 1070 111.14 1070 81.48 1070 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1072.45 62.8 1070 55.8 1067.55 62.8 ",
		pos="e,1070,54.284 1070,125.56 1070,111.14 1070,81.476 1070,62.727"];
	pileup -> vcf	[_draw_="c 7 -#000000 B 7 1141.17 170.74 1138.99 163.93 1136.17 153.96 1135 145 1131.25 116.16 1136.75 82.44 1140.97 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1143.34 63.34 1142.49 55.97 1138.56 62.26 ",
		pos="e,1142.8,54.494 1141.2,170.74 1139,163.93 1136.2,153.96 1135,145 1131.2,116.16 1136.8,82.442 1141,62.731"];
	pileup -> vcf2bed	[_draw_="c 7 -#000000 B 7 1171.92 170.53 1190.31 165.12 1214.97 158.17 1237 153 1247.49 150.54 1258.75 148.17 1269.6 146.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1269.92 148.47 1276.32 144.73 1268.98 143.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1243.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1243.5,157.5",
		pos="e,1277.8,144.44 1171.9,170.53 1190.3,165.12 1215,158.17 1237,153 1247.5,150.54 1258.7,148.17 1269.6,146.03"];
	pileup -> bisulfite_qc	[_draw_="c 7 -#000000 B 10 1126.23 170.53 1121.21 167.96 1115.81 165.01 1111 162 1105.35 158.46 1104.55 156.69 1099 153 1096.76 151.51 1094.4 \
150.01 1092.01 148.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1093.52 146.59 1086.25 145.11 1091 150.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1117.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="1117.5,157.5",
		pos="e,1085,144.33 1126.2,170.53 1121.2,167.96 1115.8,165.01 1111,162 1105.4,158.46 1104.6,156.69 1099,153 1096.8,151.51 1094.4,150.01 \
1092,148.55"];
	bam_to_trimmed_fastq_and_biscuit_alignments -> merge	[_draw_="c 7 -#000000 B 4 739.85 260.5 793.13 253.07 870.23 242.3 924.11 234.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 924.12 237.25 930.72 233.86 923.44 232.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 871.5 245.6 0 23 4 -bams ",
		label=bams,
		lp="871.5,247.5",
		pos="e,932.21,233.65 739.85,260.5 793.13,253.07 870.23,242.3 924.11,234.78"];
}