digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 593 508 593 508 0 ",
		bb="0,0,508,593",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 530 8 585 405 585 405 530 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 573 0 84 15 -Workflow Inputs ",
			bb="8,530,405,585",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,575.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 538.5 16 557.5 92 557.5 92 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 54 545.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_cram,
			pos="54,548",
			rects="16,538.5,92,557.5",
			width=1.0556];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 96.5 538.5 96.5 557.5 165.5 557.5 165.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 131 545.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="131,548",
			rects="96.5,538.5,165.5,557.5",
			width=0.95833];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 169.5 538.5 169.5 557.5 250.5 557.5 250.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 545.5 0 65 11 -normal_cram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_cram,
			pos="210,548",
			rects="169.5,538.5,250.5,557.5",
			width=1.125];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 333.5 538.5 333.5 557.5 396.5 557.5 396.5 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 365 545.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="365,548",
			rects="333.5,538.5,396.5,557.5",
			width=0.875];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 255 538.5 255 557.5 329 557.5 329 538.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292 545.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="292,548",
			rects="255,538.5,329,557.5",
			width=1.0278];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 280 8 280 63 455 63 455 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 334 15 0 92 16 -Workflow Outputs ",
			bb="280,8,455,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="334,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 288.5 35.5 288.5 54.5 359.5 54.5 359.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="324,45",
			rects="288.5,35.5,359.5,54.5",
			width=0.98611];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 363.5 35.5 363.5 54.5 446.5 54.5 446.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 405 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="405,45",
			rects="363.5,35.5,446.5,54.5",
			width=1.1528];
	}
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 104.5 440.5 104.5 459.5 237.5 459.5 237.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 171 447.5 0 117 21 -Per-chromosome pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-chromosome pindel",
		pos="171,450",
		rects="104.5,440.5,237.5,459.5",
		width=1.8472];
	tumor_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 52.98 538.64 51.87 525.55 51.77 500.15 65 485 74.19 474.48 86.65 467.18 99.79 462.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 100.36 464.54 106.16 459.92 98.75 459.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 89.5 493.1 0 49 10 -tumor_cram ",
		label=tumor_cram,
		lp="89.5,495",
		pos="e,107.59,459.42 52.981,538.64 51.874,525.55 51.767,500.15 65,485 74.194,474.48 86.65,467.18 99.794,462.14"];
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 313.5 80.5 313.5 99.5 414.5 99.5 414.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="364,90",
		rects="313.5,80.5,414.5,99.5",
		width=1.4028];
	tumor_cram -> filter	[_draw_="c 7 -#000000 B 10 51.64 538.78 48.97 528.76 45 511.28 45 496 45 496 45 496 45 134 45 108.02 213.3 97.1 305.41 93.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 305.4 95.51 312.29 92.77 305.2 90.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 55.5 313.1 0 21 4 -cram ",
		label=cram,
		lp="55.5,315",
		pos="e,313.81,92.704 51.635,538.78 48.969,528.76 45,511.28 45,496 45,496 45,496 45,134 45,108.02 213.3,97.096 305.41,93.062"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 125.96 538.86 119.02 526.49 108.4 502.56 118 485 123.04 475.78 131.76 468.69 140.69 463.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 141.82 465.61 146.84 460.15 139.51 461.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 140 493.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="140,495",
		pos="e,148.17,459.44 125.96,538.86 119.02,526.49 108.4,502.56 118,485 123.04,475.78 131.76,468.69 140.69,463.44"];
	normal_cram -> pindel_cat	[_draw_="c 7 -#000000 B 7 197.11 538.78 186.79 531.37 173.08 519.43 167 505 161.99 493.1 163.51 478.44 165.99 467.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.28 468.29 167.69 460.9 163.54 467.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 193.5 493.1 0 53 11 -normal_cram ",
		label=normal_cram,
		lp="193.5,495",
		pos="e,168.08,459.43 197.11,538.78 186.79,531.37 173.08,519.43 167,505 161.99,493.1 163.51,478.44 165.99,467.39"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 227.5 350.5 227.5 369.5 356.5 369.5 356.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 292 357.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="292,360",
		rects="227.5,350.5,356.5,369.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 375.19 538.52 387.84 526.89 406.85 505.13 399 485 393.51 470.93 383.92 472.85 376 460 355.55 426.84 373.24 404.84 \
345 378 343.26 376.35 341.36 374.85 339.34 373.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.75 371.48 333.44 370.2 338.35 375.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 396 448.1 0 40 9 -reference ",
		label=reference,
		lp="396,450",
		pos="e,332.12,369.46 375.19,538.52 387.84,526.89 406.85,505.13 399,485 393.51,470.93 383.92,472.85 376,460 355.55,426.84 373.24,404.84 \
345,378 343.26,376.35 341.36,374.85 339.34,373.51"];
	region_filter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 293.5 215.5 293.5 234.5 434.5 234.5 434.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 222.5 0 125 25 -SelectVariants (GATK 3.6) ",
		height=0.27778,
		label="SelectVariants (GATK 3.6)",
		pos="364,225",
		rects="293.5,215.5,434.5,234.5",
		width=1.9583];
	reference -> region_filter	[_draw_="c 7 -#000000 B 10 384.55 538.55 400.35 530.25 420 515.92 420 496 420 496 420 496 420 269 420 255.06 408.96 245.03 396.68 238.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.08 236.14 390.73 235.18 395.88 240.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 440 380.6 0 40 9 -reference ",
		label=reference,
		lp="440,382.5",
		pos="e,389.38,234.5 384.55,538.55 400.35,530.25 420,515.92 420,496 420,496 420,496 420,269 420,255.06 408.96,245.03 396.68,238.17"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 7 364.8 538.53 364.02 525.3 360.59 499.7 346 485 331.77 470.66 286.57 462.11 245.67 457.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 246.03 454.74 238.8 456.37 245.47 459.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 378 493.1 0 40 9 -reference ",
		label=reference,
		lp="378,495",
		pos="e,237.29,456.2 364.8,538.53 364.02,525.3 360.59,499.7 346,485 331.77,470.66 286.57,462.11 245.67,457.17"];
	reference -> filter	[_draw_="c 7 -#000000 B 10 396.46 544.5 426.75 540.16 468 528.33 468 496 468 496 468 496 468 134 468 111.09 446.19 100.15 422.54 95.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 423.3 92.66 415.96 93.77 422.39 97.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 488 313.1 0 40 9 -reference ",
		label=reference,
		lp="488,315",
		pos="e,414.48,93.487 396.46,544.5 426.75,540.16 468,528.33 468,496 468,496 468,496 468,134 468,111.09 446.19,100.15 422.54,95.014"];
	interval_list -> region_filter	[_draw_="c 7 -#000000 B 16 311.58 538.56 319.55 534.43 328.42 528.85 335 522 340.92 515.84 341.37 513.14 344 505 363.86 443.51 364 425.61 \
364 361 364 361 364 361 364 269 364 260.31 364 250.63 364 242.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.45 242.76 364 235.76 361.55 242.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 386.5 380.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="386.5,382.5",
		pos="e,364,234.24 311.58,538.56 319.55,534.43 328.42,528.85 335,522 340.92,515.84 341.37,513.14 344,505 363.86,443.51 364,425.61 364,\
361 364,361 364,361 364,269 364,260.31 364,250.63 364,242.65"];
	get_chromosome_list	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 222 485.5 222 504.5 344 504.5 344 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 283 492.5 0 106 19 -get_chromosome_list ",
		height=0.27778,
		label=get_chromosome_list,
		pos="283,495",
		rects="222,485.5,344,504.5",
		width=1.6944];
	interval_list -> get_chromosome_list	[_draw_="c 7 -#000000 B 4 290.51 538.58 289.27 531.52 287.45 521.24 285.92 512.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.35 512.22 284.72 505.76 283.53 513.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310.5 515.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="310.5,517.5",
		pos="e,284.46,504.26 290.51,538.58 289.27,531.52 287.45,521.24 285.92,512.55"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 172.5 395.5 172.5 414.5 221.5 414.5 221.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 197 402.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="197,405",
		rects="172.5,395.5,221.5,414.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 213.1 395.73 223.53 390.47 237.46 383.6 250 378 254.13 376.15 258.52 374.28 262.85 372.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.55 374.84 269.11 369.93 261.7 370.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 299 380.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="299,382.5",
		pos="e,270.51,369.36 213.1,395.73 223.53,390.47 237.46,383.6 250,378 254.13,376.15 258.52,374.28 262.85,372.48"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 275.5 305.5 275.5 324.5 340.5 324.5 340.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 308 312.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="308,315",
		rects="275.5,305.5,340.5,324.5",
		width=0.90278];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 295.08 350.71 297.03 345.47 299.62 338.53 301.96 332.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.25 333.1 304.4 325.68 299.66 331.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307.5 335.6 0 13 4 -file ",
		label=file,
		lp="307.5,337.5",
		pos="e,304.92,324.27 295.08,350.71 297.03,345.47 299.62,338.53 301.96,332.24"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 290 260.5 290 279.5 352 279.5 352 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 321 267.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="321,270",
		rects="290,260.5,352,279.5",
		width=0.86111];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 310.51 305.71 312.09 300.47 314.19 293.53 316.09 287.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 318.38 288.12 318.06 280.71 313.69 286.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 321.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="321.5,292.5",
		pos="e,318.5,279.27 310.51,305.71 312.09,300.47 314.19,293.53 316.09,287.24"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 299.5 170.5 299.5 189.5 428.5 189.5 428.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="364,180",
		rects="299.5,170.5,428.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 333 125.5 333 144.5 395 144.5 395 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 364 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="364,135",
		rects="333,125.5,395,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 364 170.71 364 165.59 364 158.85 364 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.45 152.78 364 145.78 361.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="370.5,157.5",
		pos="e,364,144.27 364,170.71 364,165.59 364,158.85 364,152.67"];
	region_filter -> remove_end_tags	[_draw_="c 7 -#000000 B 4 364 215.71 364 210.59 364 203.85 364 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.45 197.78 364 190.78 361.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="370.5,202.5",
		pos="e,364,189.27 364,215.71 364,210.59 364,203.85 364,197.67"];
	get_chromosome_list -> pindel_cat	[_draw_="c 7 -#000000 B 4 260.87 485.5 243.69 478.91 219.7 469.7 200.82 462.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 201.91 460.24 194.49 460.02 200.15 464.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 264 470.6 0 54 10 -chromosome ",
		label=chromosome,
		lp="264,472.5",
		pos="e,193.08,459.48 260.87,485.5 243.69,478.91 219.7,469.7 200.82,462.45"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 176.01 440.71 179.32 435.24 183.76 427.9 187.7 421.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 189.69 422.82 191.22 415.56 185.5 420.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 238.5 425.6 0 105 22 -chromosome_pindel_outs ",
		label=chromosome_pindel_outs,
		lp="238.5,427.5",
		pos="e,192,414.27 176.01,440.71 179.32,435.24 183.76,427.9 187.7,421.38"];
	index -> region_filter	[_draw_="c 7 -#000000 B 4 329.29 260.71 335.12 254.88 343.07 246.93 349.88 240.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 351.45 242.02 354.66 235.34 347.98 238.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 352.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="352.5,247.5",
		pos="e,355.73,234.27 329.29,260.71 335.12,254.88 343.07,246.93 349.88,240.12"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 364 125.71 364 120.59 364 113.85 364 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 366.45 107.78 364 100.78 361.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 370.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="370.5,112.5",
		pos="e,364,99.265 364,125.71 364,120.59 364,113.85 364,107.67"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 356.29 80.71 350.86 74.88 343.47 66.93 337.13 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 339.28 58.83 332.72 55.37 335.69 62.17 ",
		pos="e,331.69,54.265 356.29,80.709 350.86,74.879 343.47,66.934 337.13,60.117"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 371.91 80.71 377.46 74.88 385.04 66.93 391.54 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 393.02 62.12 396.07 55.36 389.47 58.74 ",
		pos="e,397.12,54.265 371.91,80.709 377.46,74.879 385.04,66.934 391.54,60.117"];
}