digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 554 413 554 0 ",
		bb="0,0,554,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 546 405 546 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,546,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 79.5 377.5 79.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 48 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="48,368",
			rects="16.5,358.5,79.5,377.5",
			width=0.875];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 84 358.5 84 377.5 152 377.5 152 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 118 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="118,368",
			rects="84,358.5,152,377.5",
			width=0.94444];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 156.5 358.5 156.5 377.5 225.5 377.5 225.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 191 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="191,368",
			rects="156.5,358.5,225.5,377.5",
			width=0.95833];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 389.5 358.5 389.5 377.5 470.5 377.5 470.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 430 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="430,368",
			rects="389.5,358.5,470.5,377.5",
			width=1.125];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 474.5 358.5 474.5 377.5 537.5 377.5 537.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="506,368",
			rects="474.5,358.5,537.5,377.5",
			width=0.875];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 358.5 230 377.5 308 377.5 308 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 269 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="269,368",
			rects="230,358.5,308,377.5",
			width=1.0833];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 312.5 358.5 312.5 377.5 385.5 377.5 385.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 349 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="349,368",
			rects="312.5,358.5,385.5,377.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 313 8 313 63 433 63 433 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 367 15 0 92 16 -Workflow Outputs ",
			bb="313,8,433,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="367,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 321.5 35.5 321.5 54.5 424.5 54.5 424.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="373,45",
			rects="321.5,35.5,424.5,54.5",
			width=1.4306];
	}
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 327 215.5 327 234.5 419 234.5 419 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="373,225",
		rects="327,215.5,419,234.5",
		width=1.2778];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 7 46.98 358.72 45.5 342.66 44.79 307.18 64 288 99.17 252.9 239.98 236.39 318.82 229.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 318.9 232.22 325.68 229.21 318.5 227.34 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 84 290.6 0 40 9 -reference ",
		label=reference,
		lp="84,292.5",
		pos="e,327.19,229.08 46.98,358.72 45.505,342.66 44.786,307.18 64,288 99.168,252.9 239.98,236.39 318.82,229.77"];
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 164 305.5 164 324.5 256 324.5 256 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="210,315",
		rects="164,305.5,256,324.5",
		width=1.2778];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 58.48 358.57 68.88 350.66 85.61 339.15 102 333 118.88 326.67 138.09 322.69 155.59 320.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 155.9 322.63 162.52 319.29 155.26 317.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 122 335.6 0 40 9 -reference ",
		label=reference,
		lp="122,337.5",
		pos="e,164.02,319.09 58.477,358.57 68.883,350.66 85.612,339.15 102,333 118.88,326.67 138.09,322.69 155.59,320.2"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 125.37 358.62 132.51 350.96 144 339.83 156 333 159.64 330.93 163.57 329.07 167.59 327.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 168.27 329.78 173.96 325.03 166.54 325.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 177.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="177.5,337.5",
		pos="e,175.37,324.49 125.37,358.62 132.51,350.96 144,339.83 156,333 159.64,330.93 163.57,329.07 167.59,327.42"];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 4 194.14 358.58 196.82 351.37 200.76 340.81 204.04 332 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 206.24 333.1 206.39 325.68 201.65 331.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 225 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="225,337.5",
		pos="e,206.92,324.26 194.14,358.58 196.82,351.37 200.76,340.81 204.04,332"];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 4 426.61 358.6 417.36 335.72 391.6 272 379.47 242 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 381.77 241.15 376.87 235.58 377.23 242.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 428.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="428.5,292.5",
		pos="e,376.31,234.18 426.61,358.6 417.36,335.72 391.6,272 379.47,242"];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 502.28 358.93 495.07 343.83 478.01 310.78 457 288 438.45 267.89 412.57 249.94 394.45 238.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 396.22 236.8 388.97 235.22 393.65 240.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 483.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="483.5,292.5",
		pos="e,387.68,234.43 502.28,358.93 495.07,343.83 478.01,310.78 457,288 438.45,267.89 412.57,249.94 394.45,238.59"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 265.62 358.75 262.16 351.2 256.14 340.13 248 333 246.04 331.29 243.88 329.72 241.62 328.29 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.24 326.39 235.93 325.14 240.87 330.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 280.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="280.5,337.5",
		pos="e,234.61,324.41 265.62,358.75 262.16,351.2 256.14,340.13 248,333 246.04,331.29 243.88,329.72 241.62,328.29"];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 341.18 358.57 333.33 350.65 320.49 339.14 307 333 293.73 326.96 278.54 323.06 264.18 320.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.63 318.13 257.34 319.45 263.86 322.97 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 343 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="343,337.5",
		pos="e,255.84,319.21 341.18,358.57 333.33,350.65 320.49,339.14 307,333 293.73,326.96 278.54,323.06 264.18,320.54"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 331.5 170.5 331.5 189.5 414.5 189.5 414.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="373,180",
		rects="331.5,170.5,414.5,189.5",
		width=1.1528];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 308.5 125.5 308.5 144.5 437.5 144.5 437.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="373,135",
		rects="308.5,125.5,437.5,144.5",
		width=1.7917];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 373 170.71 373 165.59 373 158.85 373 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 152.78 373 145.78 370.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="379.5,157.5",
		pos="e,373,144.27 373,170.71 373,165.59 373,158.85 373,152.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 342 80.5 342 99.5 404 99.5 404 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="373,90",
		rects="342,80.5,404,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 373 80.71 373 75.59 373 68.85 373 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 62.78 373 55.78 370.55 62.78 ",
		pos="e,373,54.265 373,80.709 373,75.593 373,68.848 373,62.666"];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 373 125.71 373 120.59 373 113.85 373 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 107.78 373 100.78 370.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="379.5,112.5",
		pos="e,373,99.265 373,125.71 373,120.59 373,113.85 373,107.67"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 227 260.5 227 279.5 259 279.5 259 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 243 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="243,270",
		rects="227,260.5,259,279.5",
		width=0.44444];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 258.94 263.73 278.88 257.13 313.56 245.66 339.46 237.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 340.22 239.42 346.09 234.9 338.68 234.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 340.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="340.5,247.5",
		pos="e,347.53,234.42 258.94,263.73 278.88,257.13 313.56,245.66 339.46,237.09"];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 373 215.71 373 210.59 373 203.85 373 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 375.45 197.78 373 190.78 370.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 379.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="379.5,202.5",
		pos="e,373,189.27 373,215.71 373,210.59 373,203.85 373,197.67"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 164.3 314.73 130.11 313.72 92.1 308.33 110 288 123.97 272.13 185.05 270.22 219.37 270.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 218.93 272.9 225.96 270.53 218.99 268 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 134 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="134,292.5",
		pos="e,227.48,270.55 164.3,314.73 130.11,313.72 92.102,308.33 110,288 123.97,272.13 185.05,270.22 219.37,270.45"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 178.14 305.58 168.1 301.34 161 295.49 167 288 173.44 279.96 199.16 275.46 218.91 273.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 219.01 275.6 225.71 272.42 218.48 270.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 191 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="191,292.5",
		pos="e,227.21,272.26 178.14,305.58 168.1,301.34 161,295.49 167,288 173.44,279.96 199.16,275.46 218.91,273.15"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 213.5 305.83 216 300.47 219.68 293.48 224 288 224.75 287.04 225.56 286.1 226.41 285.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 227.93 287.11 231.22 280.46 224.51 283.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 248 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="248,292.5",
		pos="e,232.31,279.4 213.5,305.83 216,300.47 219.68,293.48 224,288 224.75,287.04 225.56,286.1 226.41,285.17"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 255.77 307.54 260.91 305.01 265.54 301.6 269 297 272.56 292.27 270.12 287.55 265.57 283.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.29 281.67 260.18 279.54 264.41 285.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 294 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="294,292.5",
		pos="e,258.96,278.65 255.77,307.54 260.91,305.01 265.54,301.6 269,297 272.56,292.27 270.12,287.55 265.57,283.45"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 255.87 312.68 281.84 310.85 310.75 306.64 319 297 334.55 278.84 295.18 273.34 267.48 271.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 267.61 269.24 260.5 271.35 267.37 274.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 346 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="346,292.5",
		pos="e,258.99,271.28 255.87,312.68 281.84,310.85 310.75,306.64 319,297 334.55,278.84 295.18,273.34 267.48,271.69"];
}