digraph workflow {
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		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 591.5 178.5 591.5 197.5 648.5 197.5 648.5 178.5 ",
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 690 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
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			pos="690,188",
			rects="653,178.5,727,197.5",
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		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 731 178.5 731 197.5 785 197.5 785 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 758 185.5 0 38 6 -method ",
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		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 789.5 178.5 789.5 197.5 900.5 197.5 900.5 178.5 ",
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			pos="845,188",
			rects="789.5,178.5,900.5,197.5",
			width=1.5417];
		normal_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 358.5 178.5 358.5 197.5 439.5 197.5 439.5 178.5 ",
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			pos="399,188",
			rects="358.5,178.5,439.5,197.5",
			width=1.125];
		bait_intervals	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 904.5 178.5 904.5 197.5 987.5 197.5 987.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 946 185.5 0 67 14 -bait_intervals ",
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			rects="904.5,178.5,987.5,197.5",
			width=1.1528];
		tumor_cram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 511 178.5 511 197.5 587 197.5 587 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 549 185.5 0 60 10 -tumor_cram ",
			fillcolor="#94DDF4",
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			label=tumor_cram,
			pos="549,188",
			rects="511,178.5,587,197.5",
			width=1.0556];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1391 63 1391 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1391,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 107.5 54.5 107.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 62 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="62,45",
			rects="16.5,35.5,107.5,54.5",
			width=1.2639];
		reference_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 111.5 35.5 111.5 54.5 224.5 54.5 224.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 168 42.5 0 97 18 -reference_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_coverage,
			pos="168,45",
			rects="111.5,35.5,224.5,54.5",
			width=1.5694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 229 35.5 229 54.5 303 54.5 303 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 266 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="266,45",
			rects="229,35.5,303,54.5",
			width=1.0278];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 307.5 35.5 307.5 54.5 456.5 54.5 456.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 382 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
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			label=tumor_antitarget_coverage,
			pos="382,45",
			rects="307.5,35.5,456.5,54.5",
			width=2.0694];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 460.5 35.5 460.5 54.5 599.5 54.5 599.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 530 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
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			label=tumor_segmented_ratios,
			pos="530,45",
			rects="460.5,35.5,599.5,54.5",
			width=1.9306];
		normal_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 603.5 35.5 603.5 54.5 758.5 54.5 758.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 681 42.5 0 139 26 -normal_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_antitarget_coverage,
			pos="681,45",
			rects="603.5,35.5,758.5,54.5",
			width=2.1528];
		intervals_target	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 763 35.5 763 54.5 857 54.5 857 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 810 42.5 0 78 16 -intervals_target ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_target,
			pos="810,45",
			rects="763,35.5,857,54.5",
			width=1.3056];
		intervals_antitarget	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 861.5 35.5 861.5 54.5 974.5 54.5 974.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 918 42.5 0 97 20 -intervals_antitarget ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=intervals_antitarget,
			pos="918,45",
			rects="861.5,35.5,974.5,54.5",
			width=1.5694];
		normal_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 979 35.5 979 54.5 1115 54.5 1115 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1047 42.5 0 120 22 -normal_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_target_coverage,
			pos="1047,45",
			rects="979,35.5,1115,54.5",
			width=1.8889];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1119 35.5 1119 54.5 1247 54.5 1247 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1183 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="1183,45",
			rects="1119,35.5,1247,54.5",
			width=1.7778];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1251.5 35.5 1251.5 54.5 1382.5 54.5 1382.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1317 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="1317,45",
			rects="1251.5,35.5,1382.5,54.5",
			width=1.8194];
	}
	run_cnvkit	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 647 80.5 647 99.5 715 99.5 715 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 681 87.5 0 52 10 -run_cnvkit ",
		height=0.27778,
		label=run_cnvkit,
		pos="681,90",
		rects="647,80.5,715,99.5",
		width=0.94444];
	access -> run_cnvkit	[_draw_="c 7 -#000000 B 7 315.06 178.66 296.34 166.46 267.16 143.2 283 125 306.01 98.56 540.85 92.68 638.63 91.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 638.62 93.82 645.59 91.28 638.56 88.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 297.5 133.1 0 29 6 -access ",
		label=access,
		lp="297.5,135",
		pos="e,647.1,91.265 315.06,178.66 296.34,166.46 267.16,143.2 283,125 306.01,98.563 540.85,92.677 638.63,91.371"];
	normal_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 313.5 125.5 313.5 144.5 466.5 144.5 466.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 390 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="390,135",
		rects="313.5,125.5,466.5,144.5",
		width=2.125];
	reference -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 7 459.83 178.62 451.3 173.85 440.49 167.7 431 162 424 157.79 416.42 153.04 409.7 148.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 411.32 146.89 404.1 145.18 408.67 151.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 451 155.6 0 40 9 -reference ",
		label=reference,
		lp="451,157.5",
		pos="e,402.83,144.36 459.83,178.62 451.3,173.85 440.49,167.7 431,162 424,157.79 416.42,153.04 409.7,148.77"];
	tumor_cram_to_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 519.5 125.5 519.5 144.5 672.5 144.5 672.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 596 132.5 0 137 25 -samtools view cram to bam ",
		height=0.27778,
		label="samtools view cram to bam",
		pos="596,135",
		rects="519.5,125.5,672.5,144.5",
		width=2.125];
	reference -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 7 486.48 178.66 497.44 171.03 514.66 159.92 531 153 536.46 150.69 542.32 148.62 548.21 146.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 548.72 149.2 554.75 144.88 547.35 144.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 551 155.6 0 40 9 -reference ",
		label=reference,
		lp="551,157.5",
		pos="e,556.2,144.45 486.48,178.66 497.44,171.03 514.66,159.92 531,153 536.46,150.69 542.32,148.62 548.21,146.79"];
	reference -> run_cnvkit	[_draw_="c 7 -#000000 B 7 472.45 178.56 469.04 165.37 464.83 139.82 478 125 498.73 101.68 585.66 94.35 638.82 92.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 638.63 94.51 645.53 91.78 638.44 89.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 498 133.1 0 40 9 -reference ",
		label=reference,
		lp="498,135",
		pos="e,647.04,91.724 472.45,178.56 469.04,165.37 464.83,139.82 478,125 498.73,101.68 585.66,94.352 638.82,92.052"];
	diagram -> run_cnvkit	[_draw_="c 7 -#000000 B 7 636.2 178.62 648.39 171.42 664.43 159.84 673 145 679.52 133.72 681.34 118.98 681.63 107.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 684.09 107.79 681.6 100.81 679.19 107.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 696 133.1 0 34 7 -diagram ",
		label=diagram,
		lp="696,135",
		pos="e,681.59,99.293 636.2,178.62 648.39,171.42 664.43,159.84 673,145 679.52,133.72 681.34,118.98 681.63,107.75"];
	scatter_plot -> run_cnvkit	[_draw_="c 7 -#000000 B 7 697.75 178.56 707.73 166.61 722.91 144.09 715 125 711.81 117.3 705.93 110.43 699.95 104.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 701.63 103.12 694.7 100.47 698.46 106.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 741.5 133.1 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="741.5,135",
		pos="e,693.54,99.494 697.75,178.56 707.73,166.61 722.91,144.09 715,125 711.81,117.3 705.93,110.43 699.95,104.92"];
	method -> run_cnvkit	[_draw_="c 7 -#000000 B 7 762.61 178.56 768.89 165.8 778.13 141.37 767 125 756.99 110.28 739.52 101.93 722.93 97.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 723.75 94.88 716.36 95.53 722.54 99.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 788 133.1 0 32 6 -method ",
		label=method,
		lp="788,135",
		pos="e,714.9,95.156 762.61,178.56 768.89,165.8 778.13,141.37 767,125 756.99,110.28 739.52,101.93 722.93,97.201"];
	drop_low_coverage -> run_cnvkit	[_draw_="c 7 -#000000 B 7 841.66 178.53 836.04 165.29 823.44 139.68 805 125 781.68 106.43 748.94 97.98 722.96 94.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 723.55 91.76 716.29 93.26 722.9 96.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 862.5 133.1 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="862.5,135",
		pos="e,714.79,93.06 841.66,178.53 836.04,165.29 823.44,139.68 805,125 781.68,106.43 748.94,97.983 722.96,94.15"];
	normal_cram -> normal_cram_to_bam	[_draw_="c 7 -#000000 B 4 397.51 178.58 396.27 171.52 394.45 161.24 392.92 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 395.35 152.22 391.72 145.76 390.53 153.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 404.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="404.5,157.5",
		pos="e,391.46,144.26 397.51,178.58 396.27,171.52 394.45,161.24 392.92,152.55"];
	bait_intervals -> run_cnvkit	[_draw_="c 7 -#000000 B 7 942.75 178.52 937 164.79 923.67 137.9 903 125 873.74 106.73 778.9 97.47 723.09 93.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 723.48 91.07 716.33 93.03 723.14 95.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 950.5 133.1 0 55 14 -bait_intervals ",
		label=bait_intervals,
		lp="950.5,135",
		pos="e,714.82,92.928 942.75,178.52 937,164.79 923.67,137.9 903,125 873.74,106.73 778.9,97.475 723.09,93.499"];
	tumor_cram -> tumor_cram_to_bam	[_draw_="c 7 -#000000 B 4 556.76 178.58 563.81 170.93 574.36 159.48 582.74 150.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 584.42 152.19 587.36 145.38 580.81 148.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 589.5 155.6 0 21 4 -cram ",
		label=cram,
		lp="589.5,157.5",
		pos="e,588.38,144.26 556.76,178.58 563.81,170.93 574.36,159.48 582.74,150.39"];
	normal_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 396.93 125.59 402.47 119.52 410.82 111.77 420 108 458.49 92.2 575.64 90.31 639.09 90.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 638.78 92.96 645.79 90.54 638.8 88.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 445.5 110.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="445.5,112.5",
		pos="e,647.3,90.549 396.93,125.59 402.47,119.52 410.82,111.77 420,108 458.49,92.197 575.64,90.308 639.09,90.51"];
	tumor_cram_to_bam -> run_cnvkit	[_draw_="c 7 -#000000 B 7 605.56 125.61 612.3 120.03 621.75 112.85 631 108 634.91 105.95 639.11 104.07 643.36 102.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 643.91 104.78 649.6 100.03 642.19 100.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 654 110.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="654,112.5",
		pos="e,651.02,99.499 605.56,125.61 612.3,120.03 621.75,112.85 631,108 634.91,105.95 639.11,104.07 643.36,102.37"];
	run_cnvkit -> cn_scatter_plot	[_draw_="c 7 -#000000 B 10 647.1 87.67 578.28 84.94 417.22 78.44 282 72 205.98 68.38 185.69 77.62 111 63 104.01 61.63 96.67 59.49 89.85 57.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 90.99 54.98 83.57 54.93 89.34 59.6 ",
		pos="e,82.149,54.425 647.1,87.67 578.28,84.945 417.22,78.439 282,72 205.98,68.38 185.69,77.617 111,63 104.01,61.633 96.669,59.488 89.853,\
57.178"];
	run_cnvkit -> reference_coverage	[_draw_="c 7 -#000000 B 7 647.25 89.65 571.72 90.53 383.54 89.6 229 63 220.13 61.47 210.7 59.19 201.97 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 202.72 54.44 195.31 54.87 201.37 59.16 ",
		pos="e,193.86,54.456 647.25,89.647 571.72,90.531 383.54,89.6 229,63 220.13,61.474 210.7,59.186 201.97,56.779"];
	run_cnvkit -> cn_diagram	[_draw_="c 7 -#000000 B 7 647.23 88.05 567.83 85.58 371.15 78.1 307 63 301.46 61.69 295.7 59.73 290.31 57.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 291.54 55.45 284.14 54.98 289.63 59.96 ",
		pos="e,282.74,54.386 647.23,88.047 567.83,85.581 371.15,78.103 307,63 301.46,61.695 295.7,59.726 290.31,57.586"];
	run_cnvkit -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 7 647.32 86.02 604.03 81.95 526.63 73.92 461 63 449.53 61.09 437.21 58.64 425.78 56.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 426.49 53.84 419.13 54.74 425.45 58.63 ",
		pos="e,417.65,54.418 647.32,86.015 604.03,81.952 526.63,73.915 461,63 449.53,61.092 437.21,58.638 425.78,56.191"];
	run_cnvkit -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 651.17 80.5 627.28 73.7 593.62 64.12 567.84 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 568.63 54.45 561.23 54.89 567.29 59.17 ",
		pos="e,559.77,54.478 651.17,80.505 627.28,73.702 593.62,64.118 567.84,56.776"];
	run_cnvkit -> normal_antitarget_coverage	[_draw_="c 7 -#000000 B 4 681 80.71 681 75.59 681 68.85 681 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 683.45 62.78 681 55.78 678.55 62.78 ",
		pos="e,681,54.265 681,80.709 681,75.593 681,68.848 681,62.666"];
	run_cnvkit -> intervals_target	[_draw_="c 7 -#000000 B 4 706.49 80.5 726.54 73.82 754.65 64.45 776.52 57.16 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 777.26 59.49 783.13 54.96 775.72 54.85 ",
		pos="e,784.57,54.478 706.49,80.505 726.54,73.82 754.65,64.449 776.52,57.16"];
	run_cnvkit -> intervals_antitarget	[_draw_="c 7 -#000000 B 7 714.84 85.36 750.63 81.2 808.65 73.57 858 63 866.18 61.25 874.88 59.01 883.05 56.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 883.49 59.15 889.55 54.87 882.15 54.44 ",
		pos="e,891.01,54.456 714.84,85.358 750.63,81.197 808.65,73.569 858,63 866.18,61.249 874.88,59.006 883.05,56.729"];
	run_cnvkit -> normal_target_coverage	[_draw_="c 7 -#000000 B 7 714.7 87.6 769.55 84.96 881.42 78.11 975 63 985.61 61.29 996.97 58.88 1007.46 56.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1007.95 58.81 1014.18 54.79 1006.8 54.05 ",
		pos="e,1015.7,54.435 714.7,87.595 769.55,84.957 881.42,78.106 975,63 985.61,61.288 996.97,58.88 1007.5,56.414"];
	run_cnvkit -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 714.99 89.1 788.44 88.83 967.28 85.69 1115 63 1125.15 61.44 1135.99 59.06 1145.97 56.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1146.49 58.97 1152.66 54.85 1145.27 54.23 ",
		pos="e,1154.1,54.475 714.99,89.095 788.44,88.835 967.28,85.69 1115,63 1125.1,61.441 1136,59.063 1146,56.575"];
	run_cnvkit -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 714.83 88.32 820.59 86.06 1144.14 78.06 1248 63 1258.5 61.48 1269.73 59.06 1280.02 56.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1280.4 58.95 1286.57 54.85 1279.18 54.2 ",
		pos="e,1288,54.47 714.83,88.32 820.59,86.057 1144.1,78.056 1248,63 1258.5,61.478 1269.7,59.059 1280,56.519"];
}