digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 939 233 939 0 ",
		bb="0,0,939,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 144 170 144 225 931 225 931 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 194 213 0 84 15 -Workflow Inputs ",
			bb="144,170,931,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="194,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 525.5 178.5 525.5 197.5 636.5 197.5 636.5 178.5 ",
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			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="581,188",
			rects="525.5,178.5,636.5,197.5",
			width=1.5417];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 308.5 178.5 308.5 197.5 365.5 197.5 365.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 337 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="337,188",
			rects="308.5,178.5,365.5,197.5",
			width=0.79167];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 428.5 178.5 428.5 197.5 521.5 197.5 521.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 475 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="475,188",
			rects="428.5,178.5,521.5,197.5",
			width=1.2917];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 370 178.5 370 197.5 424 197.5 424 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 397 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="397,188",
			rects="370,178.5,424,197.5",
			width=0.75];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 178.5 230 197.5 304 197.5 304 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 267 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="267,188",
			rects="230,178.5,304,197.5",
			width=1.0278];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 731 178.5 731 197.5 831 197.5 831 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 781 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="781,188",
			rects="731,178.5,831,197.5",
			width=1.3889];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 641 178.5 641 197.5 727 197.5 727 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 684 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="684,188",
			rects="641,178.5,727,197.5",
			width=1.1944];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 152.5 178.5 152.5 197.5 225.5 197.5 225.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 189 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="189,188",
			rects="152.5,178.5,225.5,197.5",
			width=1.0139];
		segment_filter	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 835.5 178.5 835.5 197.5 922.5 197.5 922.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 879 185.5 0 71 14 -segment_filter ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=segment_filter,
			pos="879,188",
			rects="835.5,178.5,922.5,197.5",
			width=1.2083];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 370.5 35.5 370.5 54.5 501.5 54.5 501.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 436 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="436,45",
			rects="370.5,35.5,501.5,54.5",
			width=1.8194];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 505.5 35.5 505.5 54.5 654.5 54.5 654.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 580 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="580,45",
			rects="505.5,35.5,654.5,54.5",
			width=2.0694];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 753.5 35.5 753.5 54.5 820.5 54.5 820.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 787 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="787,45",
			rects="753.5,35.5,820.5,54.5",
			width=0.93056];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 658.5 35.5 658.5 54.5 749.5 54.5 749.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 704 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="704,45",
			rects="658.5,35.5,749.5,54.5",
			width=1.2639];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 90 54.5 90 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="53,45",
			rects="16,35.5,90,54.5",
			width=1.0278];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94.5 35.5 94.5 54.5 233.5 54.5 233.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 164 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="164,45",
			rects="94.5,35.5,233.5,54.5",
			width=1.9306];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 238 35.5 238 54.5 366 54.5 366 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 302 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="302,45",
			rects="238,35.5,366,54.5",
			width=1.7778];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 397.5 125.5 397.5 144.5 474.5 144.5 474.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 436 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="436,135",
		rects="397.5,125.5,474.5,144.5",
		width=1.0694];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 568.93 178.79 556.99 171.04 537.97 159.64 520 153 508.09 148.6 494.79 145.24 482.35 142.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 483.15 140.38 475.81 141.47 482.22 145.19 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 578.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="578.5,157.5",
		pos="e,474.32,141.19 568.93,178.79 556.99,171.04 537.97,159.64 520,153 508.09,148.6 494.79,145.24 482.35,142.72"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 344.08 178.51 350.96 170.77 362.09 159.59 374 153 378.86 150.31 384.16 148.03 389.57 146.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 390.17 148.47 396.07 143.97 388.65 143.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 391 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="391,157.5",
		pos="e,397.5,143.5 344.08,178.51 350.96,170.77 362.09,159.59 374,153 378.86,150.31 384.16,148.03 389.57,146.09"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 4 468.56 178.58 462.82 171.08 454.3 159.93 447.41 150.92 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 449.44 149.54 443.24 145.47 445.55 152.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 487 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="487,157.5",
		pos="e,442.32,144.26 468.56,178.58 462.82,171.08 454.3,159.93 447.41,150.92"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 536.5 80.5 536.5 99.5 831.5 99.5 831.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 684 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="684,90",
		rects="536.5,80.5,831.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 493.18 178.65 530.39 161.56 615.33 122.54 658.21 102.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 659 105.18 664.34 100.03 656.95 100.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 639 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="639,135",
		pos="e,665.71,99.4 493.18,178.65 530.39,161.56 615.33,122.54 658.21,102.84"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 400.63 178.66 404 171.44 409.47 160.94 416 153 416.8 152.03 417.65 151.08 418.54 150.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 420.2 151.95 423.65 145.38 416.86 148.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 432 155.6 0 32 6 -method ",
		label=method,
		lp="432,157.5",
		pos="e,424.75,144.35 400.63,178.66 404,171.44 409.47,160.94 416,153 416.8,152.03 417.65,151.08 418.54,150.14"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 274.91 178.76 283.13 170.76 296.75 158.97 311 153 335.67 142.67 365.24 138.33 389.43 136.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.39 139.07 396.23 136.2 389.1 134.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 335.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="335.5,157.5",
		pos="e,397.74,136.11 274.91,178.76 283.13,170.76 296.75,158.97 311,153 335.67,142.67 365.24,138.33 389.43,136.61"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 772.73 178.82 756.2 162.46 718.93 125.57 698.34 105.19 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 700.3 103.69 693.6 100.5 696.85 107.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 764.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="764.5,135",
		pos="e,692.53,99.438 772.73,178.82 756.2,162.46 718.93,125.57 698.34,105.19"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 671.68 178.68 659.05 170.61 638.54 158.77 619 153 612.53 151.09 534.77 144.29 482.72 139.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 482.97 137.45 475.79 139.3 482.56 142.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 670.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="670.5,157.5",
		pos="e,474.28,139.18 671.68,178.68 659.05,170.61 638.54,158.77 619,153 612.53,151.09 534.77,144.29 482.72,139.89"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 200.06 178.65 211.43 170.56 229.97 158.71 248 153 273.37 144.97 342.2 140.29 389.15 137.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.26 140.38 396.13 137.6 389.02 135.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 271 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="271,157.5",
		pos="e,397.65,137.52 200.06,178.65 211.43,170.56 229.97,158.71 248,153 273.37,144.97 342.2,140.29 389.15,137.94"];
	segment_filter -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 869.61 178.64 854.47 165.55 823.29 140.14 793 125 773.05 115.03 749.59 107.26 729.55 101.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 730.34 99.35 722.94 99.89 729.06 104.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 855.5 133.1 0 59 14 -segment_filter ",
		label=segment_filter,
		lp="855.5,135",
		pos="e,721.48,99.492 869.61,178.64 854.47,165.55 823.29,140.14 793,125 773.05,115.03 749.59,107.26 729.55,101.67"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 436 125.56 436 111.14 436 81.48 436 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 438.45 62.8 436 55.8 433.55 62.8 ",
		pos="e,436,54.284 436,125.56 436,111.14 436,81.476 436,62.727"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 10 438.28 125.6 442.79 109.3 452.75 74.67 457 71 472.37 57.72 482.07 66.94 502 63 512.62 60.9 524.02 58.5 534.73 \
56.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 534.97 58.63 541.29 54.74 533.93 53.84 ",
		pos="e,542.77,54.422 438.28,125.6 442.79,109.3 452.75,74.674 457,71 472.37,57.721 482.07,66.941 502,63 512.62,60.9 524.02,58.499 534.73,\
56.177"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 13 444.99 125.51 451.14 120.02 459.65 113 468 108 495.7 91.43 503.88 88.56 535 80 586.94 65.72 602.64 75.66 655 63 \
661.52 61.42 668.4 59.32 674.87 57.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 675.58 59.49 681.37 54.86 673.96 54.86 ",
		pos="e,682.8,54.358 444.99,125.51 451.14,120.02 459.65,113 468,108 495.7,91.432 503.88,88.555 535,80 586.94,65.721 602.64,75.665 655,\
63 661.52,61.422 668.4,59.322 674.87,57.138"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 7 397.7 128.48 333.83 118.74 201.91 96.33 94 63 88.98 61.45 83.72 59.52 78.7 57.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 79.9 55.36 72.5 54.94 78.03 59.89 ",
		pos="e,71.1,54.361 397.7,128.48 333.83,118.74 201.91,96.33 94,63 88.975,61.448 83.715,59.515 78.703,57.515"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 409.92 125.56 360.47 109.56 253.1 74.83 198.05 57.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 198.86 54.7 191.44 54.88 197.35 59.36 ",
		pos="e,190,54.412 409.92,125.56 360.47,109.56 253.1,74.827 198.05,57.017"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 423.15 125.56 399.58 110.08 349.3 77.06 321.49 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 323.08 56.91 315.88 55.11 320.39 61.01 ",
		pos="e,314.61,54.284 423.15,125.56 399.58,110.08 349.3,77.061 321.49,58.802"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 450.88 125.56 455.46 122.9 460.47 119.89 465 117 470.92 113.22 471.38 110.37 478 108 488.78 104.14 507 101.14 \
528.27 98.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.35 101.28 535.06 98.13 527.85 96.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 493.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="493.5,112.5",
		pos="e,536.57,97.971 450.88,125.56 455.46,122.9 460.47,119.89 465,117 470.92,113.22 471.38,110.37 478,108 488.78,104.14 507,101.14 528.27,\
98.826"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 474.38 127.63 484.92 125.09 496.16 121.64 506 117 512.03 114.16 511.79 110.43 518 108 525.46 105.08 537.43 102.64 \
551.62 100.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 551.61 103.06 558.22 99.69 550.95 98.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 533 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="533,112.5",
		pos="e,559.72,99.49 474.38,127.63 484.92,125.09 496.16,121.64 506,117 512.03,114.16 511.79,110.43 518,108 525.46,105.08 537.43,102.64 \
551.62,100.59"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 706.43 80.52 719.26 75.58 735.61 69.13 750 63 753.88 61.34 757.97 59.54 761.95 57.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 762.68 60.1 768.02 54.96 760.64 55.64 ",
		pos="e,769.4,54.329 706.43,80.52 719.26,75.58 735.61,69.134 750,63 753.88,61.344 757.97,59.536 761.95,57.737"];
}