digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 1022 233 1022 0 ",
		bb="0,0,1022,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 130 170 130 225 1014 225 1014 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 180 213 0 84 15 -Workflow Inputs ",
			bb="130,170,1014,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="180,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 138.5 178.5 138.5 197.5 195.5 197.5 195.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 167 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
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			label=diagram,
			pos="167,188",
			rects="138.5,178.5,195.5,197.5",
			width=0.79167];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 200 178.5 200 197.5 274 197.5 274 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 237 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_plot,
			pos="237,188",
			rects="200,178.5,274,197.5",
			width=1.0278];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 278.5 178.5 278.5 197.5 351.5 197.5 351.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 315 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="315,188",
			rects="278.5,178.5,351.5,197.5",
			width=1.0139];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 356 178.5 356 197.5 410 197.5 410 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 383 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="383,188",
			rects="356,178.5,410,197.5",
			width=0.75];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 414 178.5 414 197.5 500 197.5 500 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 457 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="457,188",
			rects="414,178.5,500,197.5",
			width=1.1944];
		fasta_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 504.5 178.5 504.5 197.5 597.5 197.5 597.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 551 185.5 0 77 15 -fasta_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=fasta_reference,
			pos="551,188",
			rects="504.5,178.5,597.5,197.5",
			width=1.2917];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 716.5 178.5 716.5 197.5 809.5 197.5 809.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 763 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="763,188",
			rects="716.5,178.5,809.5,197.5",
			width=1.2917];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 814 178.5 814 197.5 914 197.5 914 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 864 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="864,188",
			rects="814,178.5,914,197.5",
			width=1.3889];
		segment_filter	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 918.5 178.5 918.5 197.5 1005.5 197.5 1005.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 962 185.5 0 71 14 -segment_filter ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=segment_filter,
			pos="962,188",
			rects="918.5,178.5,1005.5,197.5",
			width=1.2083];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 601.5 178.5 601.5 197.5 712.5 197.5 712.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 657 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="657,188",
			rects="601.5,178.5,712.5,197.5",
			width=1.5417];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 830 63 830 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,830,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 391.5 35.5 391.5 54.5 522.5 54.5 522.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 457 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="457,45",
			rects="391.5,35.5,522.5,54.5",
			width=1.8194];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 526.5 35.5 526.5 54.5 617.5 54.5 617.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 572 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="572,45",
			rects="526.5,35.5,617.5,54.5",
			width=1.2639];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 754.5 35.5 754.5 54.5 821.5 54.5 821.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 788 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="788,45",
			rects="754.5,35.5,821.5,54.5",
			width=0.93056];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 622 35.5 622 54.5 750 54.5 750 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 686 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="686,45",
			rects="622,35.5,750,54.5",
			width=1.7778];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 155.5 54.5 155.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 86 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="86,45",
			rects="16.5,35.5,155.5,54.5",
			width=1.9306];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 159.5 35.5 159.5 54.5 308.5 54.5 308.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 234 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="234,45",
			rects="159.5,35.5,308.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 313 35.5 313 54.5 387 54.5 387 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 350 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="350,45",
			rects="313,35.5,387,54.5",
			width=1.0278];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 418.5 125.5 418.5 144.5 495.5 144.5 495.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 457 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="457,135",
		rects="418.5,125.5,495.5,144.5",
		width=1.0694];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 180.86 178.63 195.3 170.39 218.87 158.32 241 153 298.21 139.25 366.15 135.96 410.35 135.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.09 137.93 417.07 135.43 410.06 133.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 258 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="258,157.5",
		pos="e,418.59,135.42 180.86,178.63 195.3,170.39 218.87,158.32 241,153 298.21,139.25 366.15,135.96 410.35,135.48"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 248.5 178.72 260.31 170.68 279.51 158.87 298 153 334.55 141.39 377.96 137.36 410.18 136.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.11 138.56 417.02 135.89 409.95 133.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 322.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="322.5,157.5",
		pos="e,418.54,135.84 248.5,178.72 260.31,170.68 279.51,158.87 298,153 334.55,141.39 377.96,137.36 410.18,136.11"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 324.63 178.64 334.21 170.78 349.66 159.3 365 153 379.32 147.11 395.74 143.25 410.7 140.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 410.81 143.19 417.35 139.69 410.05 138.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 388 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="388,157.5",
		pos="e,418.84,139.46 324.63,178.64 334.21,170.78 349.66,159.3 365,153 379.32,147.11 395.74,143.25 410.7,140.73"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 392 178.56 400.02 171.28 412.27 160.75 424 153 426.46 151.38 429.09 149.79 431.75 148.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 432.45 150.69 437.45 145.21 430.13 146.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 440 155.6 0 32 6 -method ",
		label=method,
		lp="440,157.5",
		pos="e,438.79,144.49 392,178.56 400.02,171.28 412.27,160.75 424,153 426.46,151.38 429.09,149.79 431.75,148.28"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 4 457 178.58 457 171.52 457 161.24 457 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.45 152.78 457 145.78 454.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 477 155.6 0 40 9 -reference ",
		label=reference,
		lp="477,157.5",
		pos="e,457,144.26 457,178.58 457,171.52 457,161.24 457,152.55"];
	fasta_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 539.16 178.54 528.65 171.24 512.73 160.7 498 153 494.51 151.18 490.79 149.4 487.05 147.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 488.25 145.58 480.85 145.07 486.31 150.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 533 155.6 0 40 9 -reference ",
		label=reference,
		lp="533,157.5",
		pos="e,479.46,144.47 539.16,178.54 528.65,171.24 512.73,160.7 498,153 494.51,151.18 490.79,149.4 487.05,147.74"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 625.5 80.5 625.5 99.5 920.5 99.5 920.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 773 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="773,90",
		rects="625.5,80.5,920.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 763.85 178.82 765.49 163.09 769.1 128.4 771.27 107.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 773.68 108.16 771.96 100.94 768.8 107.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 801 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="801,135",
		pos="e,772.12,99.438 763.85,178.82 765.49,163.09 769.1,128.4 771.27,107.63"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 743.52 178.6 724.04 170.59 693.02 158.91 665 153 610.44 141.5 546.31 137.68 503.83 136.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.94 134.02 496.88 136.29 503.82 138.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 729 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="729,157.5",
		pos="e,495.37,136.25 743.52,178.6 724.04,170.59 693.02,158.91 665,153 610.44,141.5 546.31,137.68 503.83,136.47"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 861.8 178.84 857.99 166.03 849.1 141 834 125 825.36 115.85 813.7 108.53 802.89 103.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 803.96 100.85 796.58 100.05 801.85 105.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 874.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="874.5,135",
		pos="e,795.22,99.403 861.8,178.84 857.99,166.03 849.1,141 834,125 825.36,115.85 813.7,108.53 802.89,103.06"];
	segment_filter -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 956.52 178.78 947.16 165.41 926.8 139.04 903 125 884.29 113.96 861.98 106.45 841.18 101.37 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 841.83 99.01 834.46 99.81 840.72 103.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 956.5 133.1 0 59 14 -segment_filter ",
		label=segment_filter,
		lp="956.5,135",
		pos="e,832.98,99.47 956.52,178.78 947.16,165.41 926.8,139.04 903,125 884.29,113.96 861.98,106.45 841.18,101.37"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 634.77 178.62 614.1 171.08 582.31 160.11 554 153 537.62 148.88 519.44 145.41 503.29 142.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 503.84 140.31 496.54 141.6 503.05 145.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 624.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="624.5,157.5",
		pos="e,495.04,141.36 634.77,178.62 614.1,171.08 582.31,160.11 554,153 537.62,148.88 519.44,145.41 503.29,142.7"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 4 775.89 80.71 777.72 75.47 780.14 68.53 782.34 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 784.63 63.11 784.62 55.69 780 61.5 ",
		pos="e,785.12,54.265 775.89,80.709 777.72,75.474 780.14,68.534 782.34,62.235"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 457 125.56 457 111.14 457 81.48 457 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.45 62.8 457 55.8 454.55 62.8 ",
		pos="e,457,54.284 457,125.56 457,111.14 457,81.476 457,62.727"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 4 468.03 125.56 488.08 110.21 530.68 77.62 554.66 59.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 555.9 61.4 559.97 55.2 552.92 57.51 ",
		pos="e,561.17,54.284 468.03,125.56 488.08,110.21 530.68,77.622 554.66,59.271"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 478.96 125.56 520.25 109.69 609.5 75.4 656.18 57.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 657.04 59.75 662.7 54.96 655.28 55.18 ",
		pos="e,664.11,54.412 478.96,125.56 520.25,109.69 609.5,75.397 656.18,57.459"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 421.43 125.56 353.23 109.39 204.29 74.06 129.99 56.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 130.59 54.06 123.21 54.83 129.46 58.83 ",
		pos="e,121.74,54.477 421.43,125.56 353.23,109.39 204.29,74.059 129.99,56.434"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 435.62 125.56 395.41 109.69 308.49 75.4 263.04 57.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.14 55.26 256.73 54.97 262.34 59.82 ",
		pos="e,255.32,54.412 435.62,125.56 395.41,109.69 308.49,75.397 263.04,57.459"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 446.74 125.56 428.16 110.28 388.79 77.9 366.43 59.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 368.2 57.8 361.24 55.25 365.09 61.58 ",
		pos="e,360.07,54.284 446.74,125.56 428.16,110.28 388.79,77.901 366.43,59.509"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 495.36 129.61 523.51 126.33 562.66 121.62 597 117 634.53 111.95 676.48 105.77 710.01 100.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 710.3 103.14 716.85 99.67 709.56 98.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 674.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="674.5,112.5",
		pos="e,718.35,99.445 495.36,129.61 523.51,126.33 562.66,121.62 597,117 634.53,111.95 676.48,105.77 710.01,100.71"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 495.46 133.96 542.12 133.27 623 130.06 691 117 708.73 113.59 728.01 107.6 743.42 102.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 743.89 104.66 749.66 100 742.25 100.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 740 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="740,112.5",
		pos="e,751.09,99.496 495.46,133.96 542.12,133.27 623,130.06 691,117 708.73,113.59 728.01,107.6 743.42,102.23"];
}