digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 554 413 554 0 ",
		bb="0,0,554,413",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 350 8 405 546 405 546 350 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 393 0 84 15 -Workflow Inputs ",
			bb="8,350,546,405",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,395.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		output_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 358.5 16.5 377.5 97.5 377.5 97.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 57 365.5 0 65 11 -output_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_name,
			pos="57,368",
			rects="16.5,358.5,97.5,377.5",
			width=1.125];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 101.5 358.5 101.5 377.5 164.5 377.5 164.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 365.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="133,368",
			rects="101.5,358.5,164.5,377.5",
			width=0.875];
		ref_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 474.5 358.5 474.5 377.5 537.5 377.5 537.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506 365.5 0 47 8 -ref_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ref_name,
			pos="506,368",
			rects="474.5,358.5,537.5,377.5",
			width=0.875];
		region_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 169 358.5 169 377.5 237 377.5 237 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 203 365.5 0 52 11 -region_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=region_file,
			pos="203,368",
			rects="169,358.5,237,377.5",
			width=0.94444];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 241.5 358.5 241.5 377.5 310.5 377.5 310.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 276 365.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="276,368",
			rects="241.5,358.5,310.5,377.5",
			width=0.95833];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 315 358.5 315 377.5 393 377.5 393 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 354 365.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="354,368",
			rects="315,358.5,393,377.5",
			width=1.0833];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 397.5 358.5 397.5 377.5 470.5 377.5 470.5 358.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 434 365.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="434,368",
			rects="397.5,358.5,470.5,377.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 99 8 99 63 219 63 219 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 153 15 0 92 16 -Workflow Outputs ",
			bb="99,8,219,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="153,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		pindel_region_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 107.5 35.5 107.5 54.5 210.5 54.5 210.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 42.5 0 87 17 -pindel_region_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=pindel_region_vcf,
			pos="159,45",
			rects="107.5,35.5,210.5,54.5",
			width=1.4306];
	}
	pindel2vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 113 215.5 113 234.5 205 234.5 205 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 222.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="159,225",
		rects="113,215.5,205,234.5",
		width=1.2778];
	output_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 57.71 358.92 59.38 343.8 64.64 310.72 80 288 94.35 266.77 118.27 249.47 136.04 238.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 137.15 240.79 141.93 235.11 134.65 236.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 107.5 290.6 0 55 11 -output_name ",
		label=output_name,
		lp="107.5,292.5",
		pos="e,143.23,234.34 57.714,358.92 59.383,343.8 64.642,310.72 80,288 94.351,266.77 118.27,249.47 136.04,238.6"];
	reference -> pindel2vcf	[_draw_="c 7 -#000000 B 7 132.81 358.6 132.65 344.07 133 313.35 138 288 141.18 271.88 147.47 254.18 152.34 241.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 154.5 243.04 154.86 235.63 149.96 241.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 158 290.6 0 40 9 -reference ",
		label=reference,
		lp="158,292.5",
		pos="e,155.43,234.23 132.81,358.6 132.65,344.07 133,313.35 138,288 141.18,271.88 147.47,254.18 152.34,241.84"];
	pindel_region	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 242 305.5 242 324.5 334 324.5 334 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 288 312.5 0 76 15 -pindel v0.2.5b8 ",
		height=0.27778,
		label="pindel v0.2.5b8",
		pos="288,315",
		rects="242,305.5,334,324.5",
		width=1.2778];
	reference -> pindel_region	[_draw_="c 7 -#000000 B 7 143.04 358.59 153.03 350.69 169.12 339.18 185 333 200.32 327.04 217.71 323.16 233.78 320.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 233.97 323.1 240.55 319.67 233.27 318.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 205 335.6 0 40 9 -reference ",
		label=reference,
		lp="205,337.5",
		pos="e,242.05,319.46 143.04,358.59 153.03,350.69 169.12,339.18 185,333 200.32,327.04 217.71,323.16 233.78,320.65"];
	ref_name -> pindel2vcf	[_draw_="c 7 -#000000 B 7 501.42 358.6 492.11 342.33 469.33 306.49 440 288 369.97 243.85 272.87 230.88 213.08 227.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 213.53 224.79 206.41 226.85 213.26 229.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 471.5 290.6 0 39 8 -ref_name ",
		label=ref_name,
		lp="471.5,292.5",
		pos="e,204.9,226.76 501.42,358.6 492.11,342.33 469.33,306.49 440,288 369.97,243.85 272.87,230.88 213.08,227.22"];
	region_file -> pindel_region	[_draw_="c 7 -#000000 B 7 209.69 358.65 216.2 351.02 226.73 339.9 238 333 241.21 331.04 244.68 329.26 248.23 327.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.14 329.95 254.7 325.05 247.29 325.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 259.5 335.6 0 43 11 -region_file ",
		label=region_file,
		lp="259.5,337.5",
		pos="e,256.1,324.48 209.69,358.65 216.2,351.02 226.73,339.9 238,333 241.21,331.04 244.68,329.26 248.23,327.67"];
	insert_size -> pindel_region	[_draw_="c 7 -#000000 B 4 277.98 358.58 279.64 351.52 282.06 341.24 284.11 332.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 286.49 333.11 285.71 325.74 281.72 331.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 305 335.6 0 44 11 -insert_size ",
		label=insert_size,
		lp="305,337.5",
		pos="e,286.06,324.26 277.98,358.58 279.64,351.52 282.06,341.24 284.11,332.55"];
	normal_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 349.39 358.74 344.81 351.18 337.16 340.11 328 333 325.66 331.18 323.09 329.52 320.42 328.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 321.92 326.02 314.57 325.05 319.71 330.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 362.5 335.6 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="362.5,337.5",
		pos="e,313.22,324.37 349.39,358.74 344.81,351.18 337.16,340.11 328,333 325.66,331.18 323.09,329.52 320.42,328.01"];
	tumor_bam -> pindel_region	[_draw_="c 7 -#000000 B 7 425.51 358.56 417.02 350.64 403.21 339.12 389 333 374.33 326.68 357.52 322.7 341.87 320.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 342.59 317.83 335.31 319.24 341.89 322.68 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="426,337.5",
		pos="e,333.82,319.02 425.51,358.56 417.02,350.64 403.21,339.12 389,333 374.33,326.68 357.52,322.7 341.87,320.2"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 128 80.5 128 99.5 190 99.5 190 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 87.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="159,90",
		rects="128,80.5,190,99.5",
		width=0.86111];
	index -> pindel_region_vcf	[_draw_="c 7 -#000000 B 4 159 80.71 159 75.59 159 68.85 159 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.45 62.78 159 55.78 156.55 62.78 ",
		pos="e,159,54.265 159,80.709 159,75.593 159,68.848 159,62.666"];
	fix_vcf_header	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 117.5 170.5 117.5 189.5 200.5 189.5 200.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 177.5 0 67 14 -fix vcf header ",
		height=0.27778,
		label="fix vcf header",
		pos="159,180",
		rects="117.5,170.5,200.5,189.5",
		width=1.1528];
	pindel2vcf -> fix_vcf_header	[_draw_="c 7 -#000000 B 4 159 215.71 159 210.59 159 203.85 159 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.45 197.78 159 190.78 156.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="165.5,202.5",
		pos="e,159,189.27 159,215.71 159,210.59 159,203.85 159,197.67"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 94.5 125.5 94.5 144.5 223.5 144.5 223.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 159 132.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="159,135",
		rects="94.5,125.5,223.5,144.5",
		width=1.7917];
	fix_vcf_header -> remove_end_tags	[_draw_="c 7 -#000000 B 4 159 170.71 159 165.59 159 158.85 159 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.45 152.78 159 145.78 156.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="165.5,157.5",
		pos="e,159,144.27 159,170.71 159,165.59 159,158.85 159,152.67"];
	cat	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 248 260.5 248 279.5 280 279.5 280 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 264 267.5 0 16 3 -cat ",
		height=0.27778,
		label=cat,
		pos="264,270",
		rects="248,260.5,280,279.5",
		width=0.44444];
	cat -> pindel2vcf	[_draw_="c 7 -#000000 B 4 248.05 262.47 231.92 255.86 206.64 245.51 187.13 237.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 188.24 235.33 180.83 234.94 186.38 239.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 241.5 245.6 0 43 10 -pindel_out ",
		label=pindel_out,
		lp="241.5,247.5",
		pos="e,179.43,234.37 248.05,262.47 231.92,255.86 206.64,245.51 187.13,237.52"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 242.1 312.32 217.53 310.35 190.75 306.11 183 297 166.18 277.24 210.58 272.36 240.11 271.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 239.9 273.69 246.83 271.05 239.76 268.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 207 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="207,292.5",
		pos="e,248.34,271.01 242.1,312.32 217.53,310.35 190.75,306.11 183,297 166.18,277.24 210.58,272.36 240.11,271.24"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 249.73 305.7 245.94 303.46 242.55 300.61 240 297 237.07 292.85 238.53 288.67 241.86 284.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 243.4 286.82 247.11 280.4 240.21 283.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 264 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="264,292.5",
		pos="e,248.26,279.41 249.73,305.7 245.94,303.46 242.55,300.61 240,297 237.07,292.85 238.53,288.67 241.86,284.91"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 288.6 305.79 288.64 300.41 287.98 293.42 285 288 284.49 287.08 283.91 286.18 283.27 285.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 285.24 283.83 278.62 280.48 281.71 287.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 311 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="311,292.5",
		pos="e,277.57,279.39 288.6,305.79 288.64,300.41 287.98,293.42 285,288 284.49,287.08 283.91,286.18 283.27,285.32"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 325.14 305.56 335.34 301.47 342.12 295.73 336 288 330.08 280.52 306.81 276 288.3 273.52 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.7 271.1 281.46 272.68 288.1 275.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 362 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="362,292.5",
		pos="e,279.95,272.49 325.14,305.56 335.34,301.47 342.12,295.73 336,288 330.08,280.52 306.81,276 288.3,273.52"];
	pindel_region -> cat	[_draw_="c 7 -#000000 B 7 333.87 314.66 367.51 313.57 404.51 308.1 387 288 374.44 273.59 320.27 270.99 288.15 270.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.25 268.3 281.25 270.74 288.24 273.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 415 290.6 0 48 11 -pindel_outs ",
		label=pindel_outs,
		lp="415,292.5",
		pos="e,279.73,270.73 333.87,314.66 367.51,313.57 404.51,308.1 387,288 374.44,273.59 320.27,270.99 288.15,270.75"];
	remove_end_tags -> index	[_draw_="c 7 -#000000 B 4 159 125.71 159 120.59 159 113.85 159 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 161.45 107.78 159 100.78 156.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="165.5,112.5",
		pos="e,159,99.265 159,125.71 159,120.59 159,113.85 159,107.67"];
}