digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 548 534 548 534 0 ",
		bb="0,0,534,548",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 485 8 540 487 540 487 485 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 528 0 84 15 -Workflow Inputs ",
			bb="8,485,487,540",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,530.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 493.5 16.5 512.5 89.5 512.5 89.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 53 500.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="53,503",
			rects="16.5,493.5,89.5,512.5",
			width=1.0139];
		interval_list	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 250 493.5 250 512.5 324 512.5 324 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 287 500.5 0 58 13 -interval_list ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=interval_list,
			pos="287,503",
			rects="250,493.5,324,512.5",
			width=1.0278];
		normal_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 94 493.5 94 512.5 172 512.5 172 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 133 500.5 0 62 10 -normal_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=normal_bam,
			pos="133,503",
			rects="94,493.5,172,512.5",
			width=1.0833];
		insert_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 176.5 493.5 176.5 512.5 245.5 512.5 245.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 211 500.5 0 53 11 -insert_size ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=insert_size,
			pos="211,503",
			rects="176.5,493.5,245.5,512.5",
			width=0.95833];
		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 415.5 493.5 415.5 512.5 478.5 512.5 478.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 447 500.5 0 47 9 -reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference,
			pos="447,503",
			rects="415.5,493.5,478.5,512.5",
			width=0.875];
		scatter_count	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 328.5 493.5 328.5 512.5 411.5 512.5 411.5 493.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 370 500.5 0 67 13 -scatter_count ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=scatter_count,
			pos="370,503",
			rects="328.5,493.5,411.5,512.5",
			width=1.1528];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 304 8 304 63 479 63 479 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 358 15 0 92 16 -Workflow Outputs ",
			bb="304,8,479,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="358,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		unfiltered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 312.5 35.5 312.5 54.5 395.5 54.5 395.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 354 42.5 0 67 14 -unfiltered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=unfiltered_vcf,
			pos="354,45",
			rects="312.5,35.5,395.5,54.5",
			width=1.1528];
		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 399.5 35.5 399.5 54.5 470.5 54.5 470.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 435 42.5 0 55 12 -filtered_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=filtered_vcf,
			pos="435,45",
			rects="399.5,35.5,470.5,54.5",
			width=0.98611];
	}
	filter	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 344.5 80.5 344.5 99.5 445.5 99.5 445.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 87.5 0 85 18 -fp_filter workflow ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="fp_filter workflow",
		pos="395,90",
		rects="344.5,80.5,445.5,99.5",
		width=1.4028];
	tumor_bam -> filter	[_draw_="c 7 -#000000 B 10 54.05 493.71 55.24 483.63 57 466.1 57 451 57 451 57 451 57 134 57 106.16 239.8 96.01 336.53 92.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 336.34 95.05 343.25 92.36 336.17 90.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 66.5 290.6 0 19 3 -bam ",
		label=bam,
		lp="66.5,292.5",
		pos="e,344.76,92.309 54.051,493.71 55.236,483.63 57,466.1 57,451 57,451 57,451 57,134 57,106.16 239.8,96.012 336.53,92.591"];
	pindel_cat	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 162 395.5 162 414.5 262 414.5 262 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 212 402.5 0 84 17 -Per-region pindel ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Per-region pindel",
		pos="212,405",
		rects="162,395.5,262,414.5",
		width=1.3889];
	tumor_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 56.45 493.82 62.49 480.52 76.24 454.25 96 440 112.98 427.76 134.34 419.89 154.09 414.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 154.43 417.29 160.67 413.28 153.3 412.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 119 448.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="119,450",
		pos="e,162.15,412.93 56.454,493.82 62.493,480.52 76.238,454.25 96,440 112.98,427.76 134.34,419.89 154.09,414.85"];
	split_interval_list_to_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 252.5 440.5 252.5 459.5 391.5 459.5 391.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 322 447.5 0 123 26 -split_interval_list_to_bed ",
		height=0.27778,
		label=split_interval_list_to_bed,
		pos="322,450",
		rects="252.5,440.5,391.5,459.5",
		width=1.9306];
	interval_list -> split_interval_list_to_bed	[_draw_="c 7 -#000000 B 7 283.59 493.76 281.13 486.41 279.04 475.66 284 468 284.78 466.79 285.68 465.67 286.65 464.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 287.97 466.71 291.88 460.41 284.89 462.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 307.5 470.6 0 47 13 -interval_list ",
		label=interval_list,
		lp="307.5,472.5",
		pos="e,293.06,459.46 283.59,493.76 281.13,486.41 279.04,475.66 284,468 284.78,466.79 285.68,465.67 286.65,464.62"];
	normal_bam -> pindel_cat	[_draw_="c 7 -#000000 B 7 133.91 493.89 135.72 481.15 140.79 456.21 154 440 161.46 430.84 172.09 423.61 182.21 418.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 183.26 420.43 188.44 415.12 181.08 416.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 179.5 448.1 0 51 10 -normal_bam ",
		label=normal_bam,
		lp="179.5,450",
		pos="e,189.79,414.44 133.91,493.89 135.72,481.15 140.79,456.21 154,440 161.46,430.84 172.09,423.61 182.21,418.21"];
	insert_size -> pindel_cat	[_draw_="c 7 -#000000 B 7 209.72 493.57 208.08 481.64 205.6 459.15 207 440 207.42 434.22 208.24 427.93 209.1 422.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 211.45 423.15 210.18 415.84 206.62 422.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 448.1 0 44 11 -insert_size ",
		label=insert_size,
		lp="229,450",
		pos="e,210.43,414.35 209.72,493.57 208.08,481.64 205.6,459.15 207,440 207.42,434.22 208.24,427.93 209.1,422.35"];
	reference -> filter	[_draw_="c 7 -#000000 B 10 462.39 493.66 476.1 484.99 494 470.02 494 451 494 451 494 451 494 134 494 112.98 474.99 102.13 453.64 96.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 454.22 94.18 446.85 95.02 453.13 98.96 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 514 290.6 0 40 9 -reference ",
		label=reference,
		lp="514,292.5",
		pos="e,445.37,94.68 462.39,493.66 476.1,484.99 494,470.02 494,451 494,451 494,451 494,134 494,112.98 474.99,102.13 453.64,96.563"];
	reference -> pindel_cat	[_draw_="c 7 -#000000 B 10 436.7 493.76 427.19 485.8 413.05 473.06 403 460 396.81 451.96 400.08 446.14 392 440 373.11 425.64 315.09 416.47 \
269.97 411.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.44 408.91 263.21 410.57 269.9 413.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 423 448.1 0 40 9 -reference ",
		label=reference,
		lp="423,450",
		pos="e,261.71,410.4 436.7,493.76 427.19,485.8 413.05,473.06 403,460 396.81,451.96 400.08,446.14 392,440 373.11,425.64 315.09,416.47 269.97,\
411.32"];
	somaticfilter	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 330.5 305.5 330.5 324.5 459.5 324.5 459.5 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 312.5 0 113 24 -pindel somatic filter v1 ",
		height=0.27778,
		label="pindel somatic filter v1",
		pos="395,315",
		rects="330.5,305.5,459.5,324.5",
		width=1.7917];
	reference -> somaticfilter	[_draw_="c 7 -#000000 B 13 447 493.7 447 483.6 447 466.05 447 451 447 451 447 451 447 359 447 347.03 448.04 341.87 440 333 438.58 331.43 \
436.99 330 435.3 328.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 436.8 326.76 429.56 325.14 434.21 330.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 467 403.1 0 40 9 -reference ",
		label=reference,
		lp="467,405",
		pos="e,428.28,324.34 447,493.7 447,483.6 447,466.05 447,451 447,451 447,451 447,359 447,347.03 448.04,341.87 440,333 438.58,331.43 436.99,\
330 435.3,328.71"];
	scatter_count -> split_interval_list_to_bed	[_draw_="c 7 -#000000 B 7 358.53 493.64 352.66 489.07 345.58 483.1 340 477 336.93 473.64 333.96 469.73 331.35 465.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 333.57 464.9 327.67 460.41 329.48 467.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 368 470.6 0 56 13 -scatter_count ",
		label=scatter_count,
		lp="368,472.5",
		pos="e,326.84,459.15 358.53,493.64 352.66,489.07 345.58,483.1 340,477 336.93,473.64 333.96,469.73 331.35,465.98"];
	filter -> unfiltered_vcf	[_draw_="c 7 -#000000 B 4 387.09 80.71 381.54 74.88 373.96 66.93 367.46 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 369.53 58.74 362.93 55.36 365.98 62.12 ",
		pos="e,361.88,54.265 387.09,80.709 381.54,74.879 373.96,66.934 367.46,60.117"];
	filter -> filtered_vcf	[_draw_="c 7 -#000000 B 4 402.71 80.71 408.14 74.88 415.53 66.93 421.87 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 423.31 62.17 426.28 55.37 419.72 58.83 ",
		pos="e,427.31,54.265 402.71,80.709 408.14,74.879 415.53,66.934 421.87,60.117"];
	cat_all	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 271.5 350.5 271.5 369.5 320.5 369.5 320.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 296 357.5 0 33 7 -cat_all ",
		height=0.27778,
		label=cat_all,
		pos="296,360",
		rects="271.5,350.5,320.5,369.5",
		width=0.68056];
	cat_all -> somaticfilter	[_draw_="c 7 -#000000 B 7 310.28 350.64 319.9 345.21 332.98 338.19 345 333 349.69 330.97 354.72 329.02 359.7 327.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.23 329.62 366.02 324.99 358.61 325 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 394 335.6 0 98 21 -pindel_output_summary ",
		label=pindel_output_summary,
		lp="394,337.5",
		pos="e,367.45,324.49 310.28,350.64 319.9,345.21 332.98,338.19 345,333 349.69,330.97 354.72,329.02 359.7,327.21"];
	split_interval_list_to_bed -> pindel_cat	[_draw_="c 7 -#000000 B 4 300.27 440.5 283.47 433.94 260.04 424.78 241.54 417.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.51 415.3 235.1 415.03 240.72 419.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 297.5 425.6 0 43 11 -region_file ",
		label=region_file,
		lp="297.5,427.5",
		pos="e,233.69,414.48 300.27,440.5 283.47,433.94 260.04,424.78 241.54,417.55"];
	remove_end_tags	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 330.5 170.5 330.5 189.5 459.5 189.5 459.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 177.5 0 113 20 -remove END INFO tags ",
		height=0.27778,
		label="remove END INFO tags",
		pos="395,180",
		rects="330.5,170.5,459.5,189.5",
		width=1.7917];
	reindex	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 364 125.5 364 144.5 426 144.5 426 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 132.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="395,135",
		rects="364,125.5,426,144.5",
		width=0.86111];
	remove_end_tags -> reindex	[_draw_="c 7 -#000000 B 4 395 170.71 395 165.59 395 158.85 395 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.45 152.78 395 145.78 392.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="401.5,157.5",
		pos="e,395,144.27 395,170.71 395,165.59 395,158.85 395,152.67"];
	reindex -> filter	[_draw_="c 7 -#000000 B 4 395 125.71 395 120.59 395 113.85 395 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.45 107.78 395 100.78 392.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="401.5,112.5",
		pos="e,395,99.265 395,125.71 395,120.59 395,113.85 395,107.67"];
	index	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 364 215.5 364 234.5 426 234.5 426 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 222.5 0 46 9 -vcf index ",
		height=0.27778,
		label="vcf index",
		pos="395,225",
		rects="364,215.5,426,234.5",
		width=0.86111];
	index -> remove_end_tags	[_draw_="c 7 -#000000 B 4 395 215.71 395 210.59 395 203.85 395 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.45 197.78 395 190.78 392.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="401.5,202.5",
		pos="e,395,189.27 395,215.71 395,210.59 395,203.85 395,197.67"];
	pindel_cat -> cat_all	[_draw_="c 7 -#000000 B 4 228.6 395.5 241.02 389.14 258.2 380.35 272.1 373.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 272.98 375.54 278.09 370.17 270.74 371.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 300 380.6 0 78 18 -region_pindel_outs ",
		label=region_pindel_outs,
		lp="300,382.5",
		pos="e,279.44,369.48 228.6,395.5 241.02,389.14 258.2,380.35 272.1,373.23"];
	bgzip	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 362.5 260.5 362.5 279.5 427.5 279.5 427.5 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 395 267.5 0 49 9 -bgzip VCF ",
		height=0.27778,
		label="bgzip VCF",
		pos="395,270",
		rects="362.5,260.5,427.5,279.5",
		width=0.90278];
	bgzip -> index	[_draw_="c 7 -#000000 B 4 395 260.71 395 255.59 395 248.85 395 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.45 242.78 395 235.78 392.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="401.5,247.5",
		pos="e,395,234.27 395,260.71 395,255.59 395,248.85 395,242.67"];
	somaticfilter -> bgzip	[_draw_="c 7 -#000000 B 4 395 305.71 395 300.59 395 293.85 395 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 397.45 287.78 395 280.78 392.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 401.5 290.6 0 13 4 -file ",
		label=file,
		lp="401.5,292.5",
		pos="e,395,279.27 395,305.71 395,300.59 395,293.85 395,287.67"];
}