digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 935 233 935 0 ",
		bb="0,0,935,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 141 170 141 225 927 225 927 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 191 213 0 84 15 -Workflow Inputs ",
			bb="141,170,927,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="191,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 591 178.5 591 197.5 665 197.5 665 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 628 185.5 0 58 12 -scatter_plot ",
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			height=0.27778,
			label=scatter_plot,
			pos="628,188",
			rects="591,178.5,665,197.5",
			width=1.0278];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 317.5 178.5 317.5 197.5 428.5 197.5 428.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 373 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=drop_low_coverage,
			pos="373,188",
			rects="317.5,178.5,428.5,197.5",
			width=1.5417];
		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 493.5 178.5 493.5 197.5 586.5 197.5 586.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 540 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=male_reference,
			pos="540,188",
			rects="493.5,178.5,586.5,197.5",
			width=1.2917];
		segment_filter	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 727.5 178.5 727.5 197.5 814.5 197.5 814.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 771 185.5 0 71 14 -segment_filter ",
			fillcolor="#94DDF4",
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			label=segment_filter,
			pos="771,188",
			rects="727.5,178.5,814.5,197.5",
			width=1.2083];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 432.5 178.5 432.5 197.5 489.5 197.5 489.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 461 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
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			label=diagram,
			pos="461,188",
			rects="432.5,178.5,489.5,197.5",
			width=0.79167];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 227 178.5 227 197.5 313 197.5 313 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 270 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="270,188",
			rects="227,178.5,313,197.5",
			width=1.1944];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 669 178.5 669 197.5 723 197.5 723 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 696 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="696,188",
			rects="669,178.5,723,197.5",
			width=0.75];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 819 178.5 819 197.5 919 197.5 919 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 869 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="869,188",
			rects="819,178.5,919,197.5",
			width=1.3889];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 149.5 178.5 149.5 197.5 222.5 197.5 222.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 186 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bam,
			pos="186,188",
			rects="149.5,178.5,222.5,197.5",
			width=1.0139];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 829 63 829 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,829,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 753.5 35.5 753.5 54.5 820.5 54.5 820.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 787 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="787,45",
			rects="753.5,35.5,820.5,54.5",
			width=0.93056];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 445 35.5 445 54.5 519 54.5 519 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 482 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="482,45",
			rects="445,35.5,519,54.5",
			width=1.0278];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 523.5 35.5 523.5 54.5 614.5 54.5 614.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 569 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="569,45",
			rects="523.5,35.5,614.5,54.5",
			width=1.2639];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 618.5 35.5 618.5 54.5 749.5 54.5 749.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 684 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="684,45",
			rects="618.5,35.5,749.5,54.5",
			width=1.8194];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 35.5 16 54.5 144 54.5 144 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 80 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="80,45",
			rects="16,35.5,144,54.5",
			width=1.7778];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 148.5 35.5 148.5 54.5 297.5 54.5 297.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 223 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="223,45",
			rects="148.5,35.5,297.5,54.5",
			width=2.0694];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 301.5 35.5 301.5 54.5 440.5 54.5 440.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 371 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="371,45",
			rects="301.5,35.5,440.5,54.5",
			width=1.9306];
	}
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 443.5 125.5 443.5 144.5 520.5 144.5 520.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 482 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="482,135",
		rects="443.5,125.5,520.5,144.5",
		width=1.0694];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 619.51 178.56 611.02 170.64 597.21 159.12 583 153 566.02 145.68 546.17 141.5 528.58 139.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.9 136.69 521.66 138.28 528.31 141.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 621.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="621.5,157.5",
		pos="e,520.15,138.09 619.51,178.56 611.02,170.64 597.21,159.12 583,153 566.02,145.68 546.17,141.5 528.58,139.12"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 375.16 178.62 377.64 170.74 382.5 159.25 391 153 398.3 147.63 416.81 143.69 435.26 140.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.59 143.4 442.18 140.01 434.91 138.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 430.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="430.5,157.5",
		pos="e,443.68,139.8 375.16,178.62 377.64,170.74 382.5,159.25 391,153 398.3,147.63 416.81,143.69 435.26,140.97"];
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 562.5 80.5 562.5 99.5 857.5 99.5 857.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 710 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="710,90",
		rects="562.5,80.5,857.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 554.79 178.65 584.8 161.7 653 123.19 688.15 103.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 688.92 105.72 693.81 100.14 686.51 101.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 679 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="679,135",
		pos="e,695.12,99.4 554.79,178.65 584.8,161.7 653,123.19 688.15,103.34"];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 533.42 178.58 527.49 171.32 518.31 160.79 509 153 507.4 151.66 505.69 150.35 503.93 149.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 505.51 147.19 498.33 145.33 502.78 151.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 550 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="550,157.5",
		pos="e,497.07,144.49 533.42,178.58 527.49,171.32 518.31,160.79 509,153 507.4,151.66 505.69,150.35 503.93,149.09"];
	segment_filter -> cns_to_vcf	[_draw_="c 7 -#000000 B 4 765.8 178.82 755.63 162.81 732.97 127.15 719.87 106.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 722 105.31 716.17 100.72 717.86 107.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 772.5 133.1 0 59 14 -segment_filter ",
		label=segment_filter,
		lp="772.5,135",
		pos="e,715.36,99.438 765.8,178.82 755.63,162.81 732.97,127.15 719.87,106.53"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 4 464.47 178.58 467.43 171.37 471.79 160.81 475.41 152 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 477.62 153.07 478.02 145.66 473.09 151.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 491 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="491,157.5",
		pos="e,478.6,144.26 464.47,178.58 467.43,171.37 471.79,160.81 475.41,152"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 279.81 178.69 289.92 170.64 306.5 158.81 323 153 359.3 140.22 402.9 136.3 435.26 135.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.19 137.84 442.14 135.24 435.09 132.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 352.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="352.5,157.5",
		pos="e,443.65,135.21 279.81,178.69 289.92,170.64 306.5,158.81 323,153 359.3,140.22 402.9,136.3 435.26,135.39"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 7 687.05 178.67 677.79 170.6 662.54 158.75 647 153 636.12 148.97 573.58 143.28 528.71 139.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 528.96 137.18 521.79 139.05 528.57 142.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 680 155.6 0 32 6 -method ",
		label=method,
		lp="680,157.5",
		pos="e,520.28,138.93 687.05,178.67 677.79,170.6 662.54,158.75 647,153 636.12,148.97 573.58,143.28 528.71,139.61"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 862.12 178.65 850.95 165.57 827.63 140.18 803 125 787.03 115.16 767.77 107.53 750.93 102.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 751.74 99.7 744.33 99.93 750.27 104.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 856.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="856.5,135",
		pos="e,742.89,99.473 862.12,178.65 850.95,165.57 827.63,140.18 803,125 787.03,115.16 767.77,107.53 750.93,102.01"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 7 199.55 178.62 213.42 170.51 235.87 158.64 257 153 289.49 144.32 379.6 139.64 435.43 137.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.33 139.95 442.23 137.24 435.15 135.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 280 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="280,157.5",
		pos="e,443.75,137.18 199.55,178.62 213.42,170.51 235.87,158.64 257,153 289.49,144.32 379.6,139.64 435.43,137.49"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 4 725.21 80.5 736.5 74.2 752.06 65.51 764.74 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 765.58 60.77 770.5 55.22 763.19 56.49 ",
		pos="e,771.82,54.478 725.21,80.505 736.5,74.203 752.06,65.514 764.74,58.432"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 4 482 125.56 482 111.14 482 81.48 482 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 484.45 62.8 482 55.8 479.55 62.8 ",
		pos="e,482,54.284 482,125.56 482,111.14 482,81.476 482,62.727"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 484.14 125.55 487.9 112.3 496.85 86.56 513 71 518.57 65.63 525.5 61.29 532.56 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 533.43 60.13 538.83 55.04 531.44 55.65 ",
		pos="e,540.21,54.424 484.14,125.55 487.9,112.3 496.85,86.561 513,71 518.57,65.63 525.5,61.293 532.56,57.837"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 7 491.58 125.88 505.84 114.17 533.88 92.59 561 80 568.62 76.46 610.37 65.19 643.15 56.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 643.64 58.98 649.8 54.84 642.4 54.24 ",
		pos="e,651.26,54.455 491.58,125.88 505.84,114.17 533.88,92.592 561,80 568.62,76.463 610.37,65.186 643.15,56.579"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 7 443.58 126.3 381.35 113.71 254.71 87.67 148 63 139.19 60.96 129.78 58.68 120.84 56.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 121.65 54.14 114.27 54.82 120.47 58.89 ",
		pos="e,112.8,54.45 443.58,126.3 381.35,113.71 254.71,87.672 148,63 139.19,60.964 129.78,58.679 120.84,56.46"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 4 457.17 125.56 410.17 109.6 308.26 74.97 255.75 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 256.61 54.83 249.19 54.9 255.03 59.47 ",
		pos="e,247.76,54.412 457.17,125.56 410.17,109.6 308.26,74.97 255.75,57.126"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 471.36 125.56 452.08 110.28 411.24 77.9 388.04 59.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.64 57.65 382.63 55.22 386.6 61.49 ",
		pos="e,381.45,54.284 471.36,125.56 452.08,110.28 411.24,77.901 388.04,59.509"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 502.47 125.67 508.52 123.05 515.09 120.04 521 117 527.91 113.44 528.62 110.44 536 108 544.94 105.05 559.75 102.53 \
577.07 100.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 577.02 102.88 583.69 99.64 576.45 98.01 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 551 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="551,112.5",
		pos="e,585.19,99.461 502.47,125.67 508.52,123.05 515.09,120.04 521,117 527.91,113.44 528.62,110.44 536,108 544.94,105.05 559.75,102.53 \
577.07,100.41"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 520.46 129.16 534.25 126.59 549.67 122.73 563 117 569.46 114.22 569.44 110.51 576 108 582.53 105.5 589.36 103.35 \
596.33 101.5 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 596.88 103.89 603.09 99.83 595.71 99.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 591.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="591.5,112.5",
		pos="e,604.56,99.472 520.46,129.16 534.25,126.59 549.67,122.73 563,117 569.46,114.22 569.44,110.51 576,108 582.53,105.5 589.36,103.35 \
596.33,101.5"];
}