digraph workflow {
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		bb="0,0,453.5,368",
		bgcolor="#eeeeee",
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		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
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		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
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		height=0,
		label="\N",
		shape=record,
		style=filled,
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	edge [arrowsize=0.7,
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		fontcolor=black,
		fontname=Helvetica,
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	subgraph cluster_inputs {
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			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 119.5 348 0 84 15 -Workflow Inputs ",
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			lheight=0.15,
			lp="119.5,350.5",
			lwidth=1.17,
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		reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 332 313.5 332 332.5 395 332.5 395 313.5 ",
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			label=reference,
			pos="363.5,323",
			rects="332,313.5,395,332.5",
			width=0.875];
		somatic_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 161.5 313.5 161.5 332.5 237.5 332.5 237.5 313.5 ",
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			pos="199.5,323",
			rects="161.5,313.5,237.5,332.5",
			width=1.0556];
		bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 399.5 313.5 399.5 332.5 437.5 332.5 437.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 418.5 320.5 0 22 3 -bam ",
			fillcolor="#94DDF4",
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			label=bam,
			pos="418.5,323",
			rects="399.5,313.5,437.5,332.5",
			width=0.52778];
		germline_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 77.5 313.5 77.5 332.5 157.5 332.5 157.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 117.5 320.5 0 64 12 -germline_vcf ",
			fillcolor="#94DDF4",
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			label=germline_vcf,
			pos="117.5,323",
			rects="77.5,313.5,157.5,332.5",
			width=1.1111];
		reference_dict	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 241.5 313.5 241.5 332.5 327.5 332.5 327.5 313.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 284.5 320.5 0 70 14 -reference_dict ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_dict,
			pos="284.5,323",
			rects="241.5,313.5,327.5,332.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 311.5 8 311.5 63 419.5 63 419.5 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 365.5 15 0 92 16 -Workflow Outputs ",
			bb="311.5,8,419.5,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="365.5,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		phased_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 329.5 35.5 329.5 54.5 401.5 54.5 401.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 365.5 42.5 0 56 10 -phased_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=phased_vcf,
			pos="365.5,45",
			rects="329.5,35.5,401.5,54.5",
			width=1];
	}
	combine_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 260.5 0 279.5 291 279.5 291 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 145.5 267.5 0 275 52 -Combine germline and somatic vcf for pVACseq phasing ",
		height=0.27778,
		label="Combine germline and somatic vcf for pVACseq phasing",
		pos="145.5,270",
		rects="0,260.5,291,279.5",
		width=4.0417];
	reference -> combine_variants	[_draw_="c 7 -#000000 B 7 348.53 313.65 342.47 310.55 335.3 307.25 328.5 305 294.98 293.91 256.75 286.1 223.93 280.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 224.49 278.39 217.2 279.72 223.73 283.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 318.5 290.6 0 40 9 -reference ",
		label=reference,
		lp="318.5,292.5",
		pos="e,215.7,279.48 348.53,313.65 342.47,310.55 335.3,307.25 328.5,305 294.98,293.91 256.75,286.1 223.93,280.78"];
	phase_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 305 125.5 305 144.5 426 144.5 426 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 365.5 132.5 0 105 19 -Read-backed phasing ",
		height=0.27778,
		label="Read-backed phasing",
		pos="365.5,135",
		rects="305,125.5,426,144.5",
		width=1.6806];
	reference -> phase_vcf	[_draw_="c 7 -#000000 B 10 364.03 313.7 364.62 303.61 365.5 286.06 365.5 271 365.5 271 365.5 271 365.5 179 365.5 170.31 365.5 160.63 365.5 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.95 152.76 365.5 145.76 363.05 152.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 385.5 223.1 0 40 9 -reference ",
		label=reference,
		lp="385.5,225",
		pos="e,365.5,144.24 364.03,313.7 364.62,303.61 365.5,286.06 365.5,271 365.5,271 365.5,271 365.5,179 365.5,170.31 365.5,160.63 365.5,152.65"];
	somatic_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 196.85 313.78 194.07 306.25 189.03 295.2 181.5 288 179.81 286.39 177.95 284.91 175.97 283.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 177.55 281.64 170.28 280.17 175.05 285.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 213 290.6 0 49 11 -somatic_vcf ",
		label=somatic_vcf,
		lp="213,292.5",
		pos="e,168.98,279.39 196.85,313.78 194.07,306.25 189.03,295.2 181.5,288 179.81,286.39 177.95,284.91 175.97,283.55"];
	bam -> phase_vcf	[_draw_="c 7 -#000000 B 10 417.97 313.7 417.38 303.61 416.5 286.06 416.5 271 416.5 271 416.5 271 416.5 179 416.5 165.57 406.04 155.49 394.59 \
148.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 396.06 146.48 388.75 145.23 393.68 150.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 426 223.1 0 19 3 -bam ",
		label=bam,
		lp="426,225",
		pos="e,387.42,144.5 417.97,313.7 417.38,303.61 416.5,286.06 416.5,271 416.5,271 416.5,271 416.5,179 416.5,165.57 406.04,155.49 394.59,\
148.47"];
	germline_vcf -> combine_variants	[_draw_="c 7 -#000000 B 7 120.55 313.62 123.27 306.57 127.57 296.33 132.5 288 132.88 287.36 133.28 286.71 133.7 286.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 135.52 287.72 137.59 280.6 131.53 284.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 158.5 290.6 0 52 12 -germline_vcf ",
		label=germline_vcf,
		lp="158.5,292.5",
		pos="e,138.47,279.37 120.55,313.62 123.27,306.57 127.57,296.33 132.5,288 132.88,287.36 133.28,286.71 133.7,286.06"];
	sort	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 270 215.5 270 234.5 329 234.5 329 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 299.5 222.5 0 43 8 -Sort VCF ",
		height=0.27778,
		label="Sort VCF",
		pos="299.5,225",
		rects="270,215.5,329,234.5",
		width=0.81944];
	reference_dict -> sort	[_draw_="c 7 -#000000 B 7 285.94 313.64 287.39 305.17 289.66 291.68 291.5 280 293.46 267.55 295.54 253.45 297.09 242.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 299.51 243.2 298.08 235.92 294.66 242.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 324 268.1 0 59 14 -reference_dict ",
		label=reference_dict,
		lp="324,270",
		pos="e,298.3,234.43 285.94,313.64 287.39,305.17 289.66,291.68 291.5,280 293.46,267.55 295.54,253.45 297.09,242.79"];
	combine_variants -> sort	[_draw_="c 7 -#000000 B 4 175.93 260.5 200.71 253.58 235.81 243.78 262.27 236.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 262.64 238.84 268.72 234.59 261.32 234.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 242 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="242,247.5",
		pos="e,270.18,234.19 175.93,260.5 200.71,253.58 235.81,243.78 262.27,236.4"];
	bgzip_and_index	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 242.5 170.5 242.5 189.5 358.5 189.5 358.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 300.5 177.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
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		label="bgzip and index VCF",
		pos="300.5,180",
		rects="242.5,170.5,358.5,189.5",
		width=1.6111];
	bgzip_and_index -> phase_vcf	[_draw_="c 7 -#000000 B 4 313.34 170.5 322.6 164.38 335.27 156 345.8 149.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 346.94 151.22 351.42 145.31 344.23 147.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 345 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="345,157.5",
		pos="e,352.68,144.48 313.34,170.5 322.6,164.38 335.27,156 345.8,149.03"];
	bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 307.5 80.5 307.5 99.5 423.5 99.5 423.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 365.5 87.5 0 100 19 -bgzip and index VCF ",
		fillcolor="#F3CEA1",
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		pos="365.5,90",
		rects="307.5,80.5,423.5,99.5",
		width=1.6111];
	bgzip_and_index_phased_vcf -> phased_vcf	[_draw_="c 7 -#000000 B 4 365.5 80.71 365.5 75.59 365.5 68.85 365.5 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.95 62.78 365.5 55.78 363.05 62.78 ",
		pos="e,365.5,54.265 365.5,80.709 365.5,75.593 365.5,68.848 365.5,62.666"];
	sort -> bgzip_and_index	[_draw_="c 7 -#000000 B 4 299.69 215.71 299.81 210.59 299.97 203.85 300.11 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.56 197.83 300.27 190.78 297.66 197.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 306 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="306,202.5",
		pos="e,300.31,189.27 299.69,215.71 299.81,210.59 299.97,203.85 300.11,197.67"];
	phase_vcf -> bgzip_and_index_phased_vcf	[_draw_="c 7 -#000000 B 4 365.5 125.71 365.5 120.59 365.5 113.85 365.5 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 367.95 107.78 365.5 100.78 363.05 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 372 110.6 0 13 3 -vcf ",
		label=vcf,
		lp="372,112.5",
		pos="e,365.5,99.265 365.5,125.71 365.5,120.59 365.5,113.85 365.5,107.67"];
}