digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 233 838 233 838 0 ",
		bb="0,0,838,233",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
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		fontcolor=black,
		fontname=Helvetica,
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		label="\N",
		shape=record,
		style=filled,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 24 170 24 225 719 225 719 170 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 74 213 0 84 15 -Workflow Inputs ",
			bb="24,170,719,225",
			label="Workflow Inputs",
			lheight=0.15,
			lp="74,215.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		male_reference	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 214.5 178.5 214.5 197.5 307.5 197.5 307.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 261 185.5 0 77 14 -male_reference ",
			fillcolor="#94DDF4",
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			label=male_reference,
			pos="261,188",
			rects="214.5,178.5,307.5,197.5",
			width=1.2917];
		scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 521 178.5 521 197.5 595 197.5 595 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 558 185.5 0 58 12 -scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
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			rects="521,178.5,595,197.5",
			width=1.0278];
		drop_low_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 599.5 178.5 599.5 197.5 710.5 197.5 710.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 655 185.5 0 95 17 -drop_low_coverage ",
			fillcolor="#94DDF4",
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			label=drop_low_coverage,
			pos="655,188",
			rects="599.5,178.5,710.5,197.5",
			width=1.5417];
		tumor_bam	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 32.5 178.5 32.5 197.5 105.5 197.5 105.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 69 185.5 0 57 9 -tumor_bam ",
			fillcolor="#94DDF4",
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			label=tumor_bam,
			pos="69,188",
			rects="32.5,178.5,105.5,197.5",
			width=1.0139];
		diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 311.5 178.5 311.5 197.5 368.5 197.5 368.5 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 340 185.5 0 41 7 -diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=diagram,
			pos="340,188",
			rects="311.5,178.5,368.5,197.5",
			width=0.79167];
		cnvkit_vcf_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 110 178.5 110 197.5 210 197.5 210 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 160 185.5 0 84 15 -cnvkit_vcf_name ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf_name,
			pos="160,188",
			rects="110,178.5,210,197.5",
			width=1.3889];
		method	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 373 178.5 373 197.5 427 197.5 427 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400 185.5 0 38 6 -method ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=method,
			pos="400,188",
			rects="373,178.5,427,197.5",
			width=0.75];
		reference_cnn	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 431 178.5 431 197.5 517 197.5 517 178.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 474 185.5 0 70 13 -reference_cnn ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=reference_cnn,
			pos="474,188",
			rects="431,178.5,517,197.5",
			width=1.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 830 63 830 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,830,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		tumor_segmented_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 319.5 35.5 319.5 54.5 458.5 54.5 458.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 389 42.5 0 123 22 -tumor_segmented_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_segmented_ratios,
			pos="389,45",
			rects="319.5,35.5,458.5,54.5",
			width=1.9306];
		tumor_bin_level_ratios	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 463 35.5 463 54.5 591 54.5 591 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 527 42.5 0 112 22 -tumor_bin_level_ratios ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_bin_level_ratios,
			pos="527,45",
			rects="463,35.5,591,54.5",
			width=1.7778];
		cnvkit_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 83.5 54.5 83.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 50 42.5 0 51 10 -cnvkit_vcf ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cnvkit_vcf,
			pos="50,45",
			rects="16.5,35.5,83.5,54.5",
			width=0.93056];
		tumor_target_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 595.5 35.5 595.5 54.5 726.5 54.5 726.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 661 42.5 0 115 21 -tumor_target_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_target_coverage,
			pos="661,45",
			rects="595.5,35.5,726.5,54.5",
			width=1.8194];
		cn_scatter_plot	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 730.5 35.5 730.5 54.5 821.5 54.5 821.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 776 42.5 0 75 15 -cn_scatter_plot ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_scatter_plot,
			pos="776,45",
			rects="730.5,35.5,821.5,54.5",
			width=1.2639];
		tumor_antitarget_coverage	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 87.5 35.5 87.5 54.5 236.5 54.5 236.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 162 42.5 0 133 25 -tumor_antitarget_coverage ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=tumor_antitarget_coverage,
			pos="162,45",
			rects="87.5,35.5,236.5,54.5",
			width=2.0694];
		cn_diagram	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 241 35.5 241 54.5 315 54.5 315 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 278 42.5 0 58 10 -cn_diagram ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cn_diagram,
			pos="278,45",
			rects="241,35.5,315,54.5",
			width=1.0278];
	}
	cns_to_vcf	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 48.5 80.5 48.5 99.5 343.5 99.5 343.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 196 87.5 0 279 57 -Convert default cnvkit .cns output to standard vcf format ",
		height=0.27778,
		label="Convert default cnvkit .cns output to standard vcf format",
		pos="196,90",
		rects="48.5,80.5,343.5,99.5",
		width=4.0972];
	male_reference -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 258.86 178.77 255.33 166.29 247.44 142.22 235 125 229.48 117.35 221.93 110.26 214.94 104.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 216.46 102.63 209.43 100.27 213.45 106.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 278 133.1 0 64 14 -male_reference ",
		label=male_reference,
		lp="278,135",
		pos="e,208.23,99.336 258.86,178.77 255.33,166.29 247.44,142.22 235,125 229.48,117.35 221.93,110.26 214.94,104.55"];
	cnvkit_main	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 350.5 125.5 350.5 144.5 427.5 144.5 427.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 389 132.5 0 61 11 -cnvkit_main ",
		height=0.27778,
		label=cnvkit_main,
		pos="389,135",
		rects="350.5,125.5,427.5,144.5",
		width=1.0694];
	male_reference -> cnvkit_main	[_draw_="c 7 -#000000 B 7 264.6 178.53 268.45 170.59 275.32 159.06 285 153 294.63 146.97 319.41 142.79 342.37 140.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 342.52 142.53 349.21 139.32 341.98 137.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 317 155.6 0 64 14 -male_reference ",
		label=male_reference,
		lp="317,157.5",
		pos="e,350.71,139.15 264.6,178.53 268.45,170.59 275.32,159.06 285,153 294.63,146.97 319.41,142.79 342.37,140.08"];
	scatter_plot -> cnvkit_main	[_draw_="c 7 -#000000 B 7 546.65 178.58 535.4 170.67 517.38 159.17 500 153 479.58 145.75 455.98 141.59 435.8 139.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 436.11 136.78 428.88 138.45 435.57 141.65 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 542.5 155.6 0 49 12 -scatter_plot ",
		label=scatter_plot,
		lp="542.5,157.5",
		pos="e,427.38,138.29 546.65,178.58 535.4,170.67 517.38,159.17 500,153 479.58,145.75 455.98,141.59 435.8,139.21"];
	drop_low_coverage -> cnvkit_main	[_draw_="c 7 -#000000 B 7 637.8 178.63 620.57 170.64 593.08 158.97 568 153 523.86 142.5 472.14 138.44 435.68 136.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 435.81 134.45 428.73 136.63 435.63 139.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 636.5 155.6 0 79 17 -drop_low_coverage ",
		label=drop_low_coverage,
		lp="636.5,157.5",
		pos="e,427.21,136.57 637.8,178.63 620.57,170.64 593.08,158.97 568,153 523.86,142.5 472.14,138.44 435.68,136.9"];
	tumor_bam -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 75.16 178.9 85.16 166.18 106.02 141.26 128 125 139.95 116.16 154.55 108.52 167.15 102.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.91 105.07 173.31 99.99 165.92 100.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 151 133.1 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="151,135",
		pos="e,174.7,99.371 75.16,178.9 85.157,166.18 106.02,141.26 128,125 139.95,116.16 154.55,108.52 167.15,102.73"];
	tumor_bam -> cnvkit_main	[_draw_="c 7 -#000000 B 10 86.62 178.56 93.74 175.45 102.12 172.16 110 170 195.53 146.51 219.79 154.31 308 145 319.1 143.83 331.05 142.52 \
342.28 141.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 342.5 143.72 349.19 140.51 341.96 138.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 220 155.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="220,157.5",
		pos="e,350.69,140.34 86.621,178.56 93.741,175.45 102.12,172.16 110,170 195.53,146.51 219.79,154.31 308,145 319.1,143.83 331.05,142.52 \
342.28,141.28"];
	diagram -> cnvkit_main	[_draw_="c 7 -#000000 B 7 342.57 178.57 345.19 171.1 349.9 160.27 357 153 358.46 151.5 360.08 150.11 361.8 148.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 362.92 151 367.47 145.14 360.26 146.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 374 155.6 0 34 7 -diagram ",
		label=diagram,
		lp="374,157.5",
		pos="e,368.74,144.32 342.57,178.57 345.19,171.1 349.9,160.27 357,153 358.46,151.5 360.08,150.11 361.8,148.81"];
	cnvkit_vcf_name -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 163.1 178.57 167.49 166.63 175.8 144.12 183 125 185.21 119.12 187.67 112.68 189.85 107 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 192.01 108.2 192.23 100.79 187.43 106.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 210.5 133.1 0 55 11 -output_name ",
		label=output_name,
		lp="210.5,135",
		pos="e,192.77,99.375 163.1,178.57 167.49,166.63 175.8,144.12 183,125 185.21,119.12 187.67,112.68 189.85,107"];
	method -> cnvkit_main	[_draw_="c 7 -#000000 B 4 398.18 178.58 396.66 171.52 394.44 161.24 392.57 152.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 394.97 152.07 391.1 145.74 390.18 153.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 410 155.6 0 32 6 -method ",
		label=method,
		lp="410,157.5",
		pos="e,390.78,144.26 398.18,178.58 396.66,171.52 394.44,161.24 392.57,152.55"];
	reference_cnn -> cnvkit_main	[_draw_="c 7 -#000000 B 7 463.6 178.51 454.34 171.2 440.26 160.65 427 153 423.97 151.25 420.73 149.56 417.47 147.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 418.64 145.81 411.27 145.06 416.57 150.25 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 469.5 155.6 0 59 13 -reference_cnn ",
		label=reference_cnn,
		lp="469.5,157.5",
		pos="e,409.89,144.42 463.6,178.51 454.34,171.2 440.26,160.65 427,153 423.97,151.25 420.73,149.56 417.47,147.96"];
	cns_to_vcf -> cnvkit_vcf	[_draw_="c 7 -#000000 B 7 151.94 80.56 131.87 76.19 107.96 70.24 87 63 82.85 61.57 78.53 59.83 74.37 58.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 75.42 55.8 68.04 55.13 73.39 60.26 ",
		pos="e,66.66,54.5 151.94,80.556 131.87,76.185 107.96,70.238 87,63 82.847,61.566 78.529,59.826 74.372,58.014"];
	cnvkit_main -> tumor_segmented_ratios	[_draw_="c 7 -#000000 B 4 389 125.56 389 111.14 389 81.48 389 62.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 391.45 62.8 389 55.8 386.55 62.8 ",
		pos="e,389,54.284 389,125.56 389,111.14 389,81.476 389,62.727"];
	cnvkit_main -> tumor_bin_level_ratios	[_draw_="c 7 -#000000 B 4 402.23 125.56 426.51 110.08 478.29 77.06 506.92 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 508.15 60.93 512.73 55.1 505.51 56.8 ",
		pos="e,514.01,54.284 402.23,125.56 426.51,110.08 478.29,77.061 506.92,58.802"];
	cnvkit_main -> tumor_target_coverage	[_draw_="c 7 -#000000 B 4 415.08 125.56 464.53 109.56 571.9 74.83 626.95 57.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 627.65 59.36 633.56 54.88 626.14 54.7 ",
		pos="e,635,54.412 415.08,125.56 464.53,109.56 571.9,74.827 626.95,57.017"];
	cnvkit_main -> cn_scatter_plot	[_draw_="c 7 -#000000 B 7 427.4 127.57 490.5 116.65 619.82 92.72 727 63 733.22 61.27 739.81 59.18 746.06 57.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 746.51 59.5 752.32 54.89 744.9 54.87 ",
		pos="e,753.75,54.39 427.4,127.57 490.5,116.65 619.82,92.721 727,63 733.22,61.274 739.81,59.181 746.06,57.062"];
	cnvkit_main -> tumor_antitarget_coverage	[_draw_="c 7 -#000000 B 10 385.02 125.83 378.62 113.66 364.83 91.02 346 80 305.2 56.13 287.46 71.75 241 63 230.12 60.95 218.45 58.55 207.5 \
56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 208.13 53.84 200.77 54.76 207.1 58.63 ",
		pos="e,199.29,54.438 385.02,125.83 378.62,113.66 364.83,91.015 346,80 305.2,56.125 287.46,71.753 241,63 230.12,60.951 218.45,58.55 207.5,\
56.209"];
	cnvkit_main -> cn_diagram	[_draw_="c 7 -#000000 B 10 388.37 125.55 386.86 111.83 381.8 84.85 365 71 348.99 57.8 338.93 68.79 319 63 313.95 61.53 308.68 59.64 303.66 \
57.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 304.86 55.5 297.46 55.08 302.98 60.02 ",
		pos="e,296.06,54.499 388.37,125.55 386.86,111.83 381.8,84.849 365,71 348.99,57.799 338.93,68.787 319,63 313.95,61.533 308.68,59.64 303.66,\
57.653"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 7 350.65 129.41 329.65 126.54 303.23 122.38 280 117 270.3 114.76 248.7 108.05 229.83 102.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 230.8 99.76 223.39 99.95 229.31 104.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 295.5 110.6 0 31 8 -cns_file ",
		label=cns_file,
		lp="295.5,112.5",
		pos="e,221.95,99.485 350.65,129.41 329.65,126.54 303.23,122.38 280,117 270.3,114.76 248.7,108.05 229.83,102.02"];
	cnvkit_main -> cns_to_vcf	[_draw_="c 7 -#000000 B 10 353.9 125.52 345.03 123.07 335.58 120.18 327 117 318.24 113.75 316.94 110.73 308 108 299.13 105.29 289.72 103 \
280.28 101.07 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 280.81 98.68 273.47 99.75 279.87 103.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 342 110.6 0 30 8 -cnr_file ",
		label=cnr_file,
		lp="342,112.5",
		pos="e,271.98,99.463 353.9,125.52 345.03,123.07 335.58,120.18 327,117 318.24,113.75 316.94,110.73 308,108 299.13,105.29 289.72,103 280.28,\
101.07"];
}