digraph workflow { graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 413 3092.12 413 3092.12 0 ", bb="0,0,3092.1,413", bgcolor="#eeeeee", clusterrank=local, color=black, dpi=96, fontsize=10, labeljust=left, nodesep=0.05, ranksep=0.22, xdotversion=1.7 ]; node [color=black, fillcolor=lightgoldenrodyellow, fontcolor=black, fontname=Helvetica, fontsize=10, height=0, label="\N", shape=record, style=filled, width=0 ]; edge [arrowsize=0.7, color=black, fontcolor=black, fontname=Helvetica, fontsize=8 ]; subgraph cluster_inputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 1013.12 350 1013.12 405 3084.12 405 3084.12 350 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 1063.12 393 0 84 15 -Workflow Inputs ", bb="1013.1,350,3084.1,405", label="Workflow Inputs", lheight=0.15, lp="1063.1,395.5", lwidth=1.17, rank=same, style=dashed ]; reference_genome_fasta_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1233.12 358.5 1233.12 377.5 1391.12 377.5 1391.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1312.12 365.5 0 142 27 -reference_genome_fasta_file ", fillcolor="#94DDF4", height=0.27778, label=reference_genome_fasta_file, pos="1312.1,368", rects="1233.1,358.5,1391.1,377.5", width=2.1944]; bam_file_tumor [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1135.62 358.5 1135.62 377.5 1228.62 377.5 1228.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1182.12 365.5 0 77 14 -bam_file_tumor ", fillcolor="#94DDF4", height=0.27778, label=bam_file_tumor, pos="1182.1,368", rects="1135.6,358.5,1228.6,377.5", width=1.2917]; log_to_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1497.62 358.5 1497.62 377.5 1564.62 377.5 1564.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1531.12 365.5 0 51 11 -log_to_file ", fillcolor="#94DDF4", height=0.27778, label=log_to_file, pos="1531.1,368", rects="1497.6,358.5,1564.6,377.5", width=0.93056]; threads [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2576.62 358.5 2576.62 377.5 2629.62 377.5 2629.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2603.12 365.5 0 37 7 -threads ", fillcolor="#94DDF4", height=0.27778, label=threads, pos="2603.1,368", rects="2576.6,358.5,2629.6,377.5", width=0.73611]; bam_file_normal [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1395.12 358.5 1395.12 377.5 1493.12 377.5 1493.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1444.12 365.5 0 82 15 -bam_file_normal ", fillcolor="#94DDF4", height=0.27778, label=bam_file_normal, pos="1444.1,368", rects="1395.1,358.5,1493.1,377.5", width=1.3611]; kit_target_bed_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2348.62 358.5 2348.62 377.5 2455.62 377.5 2455.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2402.12 365.5 0 91 19 -kit_target_bed_file ", fillcolor="#94DDF4", height=0.27778, label=kit_target_bed_file, pos="2402.1,368", rects="2348.6,358.5,2455.6,377.5", width=1.4861]; vep_data_directory [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1021.12 358.5 1021.12 377.5 1131.12 377.5 1131.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1076.12 365.5 0 94 18 -vep_data_directory ", fillcolor="#94DDF4", height=0.27778, label=vep_data_directory, pos="1076.1,368", rects="1021.1,358.5,1131.1,377.5", width=1.5278]; snps_in_kit_vcf_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2460.12 358.5 2460.12 377.5 2572.12 377.5 2572.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2516.12 365.5 0 96 20 -snps_in_kit_vcf_file ", fillcolor="#94DDF4", height=0.27778, label=snps_in_kit_vcf_file, pos="2516.1,368", rects="2460.1,358.5,2572.1,377.5", width=1.5556]; ethseq_snps_gds_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2834.12 358.5 2834.12 377.5 2954.12 377.5 2954.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2894.12 365.5 0 104 20 -ethseq_snps_gds_file ", fillcolor="#94DDF4", height=0.27778, label=ethseq_snps_gds_file, pos="2894.1,368", rects="2834.1,358.5,2954.1,377.5", width=1.6667]; spia_snps_vcf_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2633.62 358.5 2633.62 377.5 2738.62 377.5 2738.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2686.12 365.5 0 89 18 -spia_snps_vcf_file ", fillcolor="#94DDF4", height=0.27778, label=spia_snps_vcf_file, pos="2686.1,368", rects="2633.6,358.5,2738.6,377.5", width=1.4583]; kit_bait_bed_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1818.62 358.5 1818.62 377.5 1915.62 377.5 1915.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1867.12 365.5 0 81 17 -kit_bait_bed_file ", fillcolor="#94DDF4", height=0.27778, label=kit_bait_bed_file, pos="1867.1,368", rects="1818.6,358.5,1915.6,377.5", width=1.3472]; kit_bait_interval_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1920.12 358.5 1920.12 377.5 2036.12 377.5 2036.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1978.12 365.5 0 100 22 -kit_bait_interval_file ", fillcolor="#94DDF4", height=0.27778, label=kit_bait_interval_file, pos="1978.1,368", rects="1920.1,358.5,2036.1,377.5", width=1.6111]; create_reports [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2742.62 358.5 2742.62 377.5 2829.62 377.5 2829.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2786.12 365.5 0 71 14 -create_reports ", fillcolor="#94DDF4", height=0.27778, label=create_reports, pos="2786.1,368", rects="2742.6,358.5,2829.6,377.5", width=1.2083]; cnvkit_accessible_regions_bed [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1647.62 358.5 1647.62 377.5 1814.62 377.5 1814.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1731.12 365.5 0 151 29 -cnvkit_accessible_regions_bed ", fillcolor="#94DDF4", height=0.27778, label=cnvkit_accessible_regions_bed, pos="1731.1,368", rects="1647.6,358.5,1814.6,377.5", width=2.3194]; kit_target_interval_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2040.62 358.5 2040.62 377.5 2167.62 377.5 2167.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2104.12 365.5 0 111 24 -kit_target_interval_file ", fillcolor="#94DDF4", height=0.27778, label=kit_target_interval_file, pos="2104.1,368", rects="2040.6,358.5,2167.6,377.5", width=1.7639]; vep_reference_genome_version [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2171.62 358.5 2171.62 377.5 2344.62 377.5 2344.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2258.12 365.5 0 157 28 -vep_reference_genome_version ", fillcolor="#94DDF4", height=0.27778, label=vep_reference_genome_version, pos="2258.1,368", rects="2171.6,358.5,2344.6,377.5", width=2.4028]; sample_sex [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1568.62 358.5 1568.62 377.5 1643.62 377.5 1643.62 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1606.12 365.5 0 59 10 -sample_sex ", fillcolor="#94DDF4", height=0.27778, label=sample_sex, pos="1606.1,368", rects="1568.6,358.5,1643.6,377.5", width=1.0417]; ethseq_snps_vcf_file [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 2958.12 358.5 2958.12 377.5 3076.12 377.5 3076.12 358.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3017.12 365.5 0 102 20 -ethseq_snps_vcf_file ", fillcolor="#94DDF4", height=0.27778, label=ethseq_snps_vcf_file, pos="3017.1,368", rects="2958.1,358.5,3076.1,377.5", width=1.6389]; } subgraph cluster_outputs { graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 1239.12 8 1239.12 63 1445.12 63 1445.12 8 ", _ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 1293.12 15 0 92 16 -Workflow Outputs ", bb="1239.1,8,1445.1,63", label="Workflow Outputs", labelloc=b, lheight=0.15, lp="1293.1,17.5", lwidth=1.28, rank=same, style=dashed ]; output_map [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1247.62 35.5 1247.62 54.5 1322.62 54.5 1322.62 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1285.12 42.5 0 59 10 -output_map ", fillcolor="#94DDF4", height=0.27778, label=output_map, pos="1285.1,45", rects="1247.6,35.5,1322.6,54.5", width=1.0417]; output [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1327.12 35.5 1327.12 54.5 1375.12 54.5 1375.12 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1351.12 42.5 0 32 6 -output ", fillcolor="#94DDF4", height=0.27778, label=output, pos="1351.1,45", rects="1327.1,35.5,1375.1,54.5", width=0.66667]; log_files [_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1379.62 35.5 1379.62 54.5 1436.62 54.5 1436.62 35.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1408.12 42.5 0 41 9 -log_files ", fillcolor="#94DDF4", height=0.27778, label=log_files, pos="1408.1,45", rects="1379.6,35.5,1436.6,54.5", width=0.79167]; } hsmetrics_tumor [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 841.62 305.5 841.62 324.5 1186.62 324.5 1186.62 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1014.12 312.5 0 329 66 -Computes the capture statistics for hybrid capture sequencing data ", height=0.27778, label="Computes the capture statistics for hybrid capture sequencing data", pos="1014.1,315", rects="841.62,305.5,1186.6,324.5", width=4.7917]; reference_genome_fasta_file -> hsmetrics_tumor [_draw_="c 7 -#000000 B 13 1278.43 358.59 1263.43 355.24 1245.5 351.76 1229.12 350 1220.17 349.04 587.45 348.4 581.12 342 578.31 339.15 578.35 \ 335.88 581.12 333 585.72 328.22 716.59 323.55 833.25 320.32 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 833.18 322.77 840.11 320.13 833.05 317.87 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 640.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="640.62,337.5", pos="e,841.62,320.09 1278.4,358.59 1263.4,355.24 1245.5,351.76 1229.1,350 1220.2,349.04 587.45,348.4 581.12,342 578.31,339.15 578.35,\ 335.88 581.12,333 585.72,328.22 716.59,323.55 833.25,320.32"]; cnvkit [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1600.62 305.5 1600.62 324.5 1647.62 324.5 1647.62 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1624.12 312.5 0 31 6 -cnvkit ", fillcolor="#F3CEA1", height=0.27778, label=cnvkit, pos="1624.1,315", rects="1600.6,305.5,1647.6,324.5", width=0.65278]; reference_genome_fasta_file -> cnvkit [_draw_="c 7 -#000000 B 16 1278.02 358.56 1263.11 355.25 1245.35 351.81 1229.12 350 1218.44 348.81 849.64 349.68 842.12 342 839.32 339.14 \ 839.31 335.84 842.12 333 849.02 326.03 1538.34 325.63 1548.12 325 1562.83 324.05 1579.07 322.23 1592.75 320.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1592.78 322.94 1599.4 319.6 1592.13 318.09 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 901.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="901.62,337.5", pos="e,1600.9,319.4 1278,358.56 1263.1,355.25 1245.3,351.81 1229.1,350 1218.4,348.81 849.64,349.68 842.12,342 839.32,339.14 839.31,335.84 \ 842.12,333 849.02,326.03 1538.3,325.63 1548.1,325 1562.8,324.05 1579.1,322.23 1592.7,320.48"]; snvs_coverage [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 560.62 260.5 560.62 279.5 649.62 279.5 649.62 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 605.12 267.5 0 73 13 -snvs_coverage ", fillcolor="#F3CEA1", height=0.27778, label=snvs_coverage, pos="605.12,270", rects="560.62,260.5,649.62,279.5", width=1.2361]; reference_genome_fasta_file -> snvs_coverage [_draw_="c 7 -#000000 B 19 1278.43 358.56 1263.44 355.2 1245.5 351.73 1229.12 350 1215.78 348.59 272.57 351.53 263.12 342 260.3 339.16 260.37 \ 335.91 263.12 333 273.98 321.52 391.75 333.42 405.12 325 413.7 319.59 407.88 310.92 416.12 305 437.45 289.68 504.1 280.34 552.22 \ 275.42 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.44 277.86 559.17 274.73 551.96 272.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 475.62 313.1 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="475.62,315", pos="e,560.67,274.58 1278.4,358.56 1263.4,355.2 1245.5,351.73 1229.1,350 1215.8,348.59 272.57,351.53 263.12,342 260.3,339.16 260.37,335.91 \ 263.12,333 273.98,321.52 391.75,333.42 405.12,325 413.7,319.59 407.88,310.92 416.12,305 437.45,289.68 504.1,280.34 552.22,275.42"]; vep [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 100.62 260.5 100.62 279.5 435.62 279.5 435.62 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 268.12 267.5 0 319 64 -Annotates the variants with affected gene and other annotations. ", height=0.27778, label="Annotates the variants with affected gene and other annotations.", pos="268.12,270", rects="100.62,260.5,435.62,279.5", width=4.6528]; reference_genome_fasta_file -> vep [_draw_="c 7 -#000000 B 19 1278.43 358.54 1263.44 355.18 1245.51 351.72 1229.12 350 1212.71 348.28 52.75 353.71 41.12 342 38.3 339.16 38.56 \ 336.08 41.12 333 53.55 318.05 66.71 333.65 84.12 325 95.96 319.12 94.35 311.01 106.12 305 128.31 293.66 154.05 286.11 178.39 281.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.7 283.5 185.1 279.75 177.76 278.7 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 165.62 313.1 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="165.62,315", pos="e,186.58,279.46 1278.4,358.54 1263.4,355.18 1245.5,351.72 1229.1,350 1212.7,348.28 52.749,353.71 41.121,342 38.302,339.16 38.564,\ 336.08 41.121,333 53.546,318.05 66.71,333.65 84.121,325 95.956,319.12 94.353,311.01 106.12,305 128.31,293.66 154.05,286.11 178.39,\ 281.07"]; pileup_normal [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1905.12 305.5 1905.12 324.5 2191.12 324.5 2191.12 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2048.12 312.5 0 270 55 -Computes the pileup of BAM files at specified positions ", height=0.27778, label="Computes the pileup of BAM files at specified positions", pos="2048.1,315", rects="1905.1,305.5,2191.1,324.5", width=3.9722]; reference_genome_fasta_file -> pileup_normal [_draw_="c 7 -#000000 B 10 1310.36 358.63 1309.26 350.77 1309.15 339.29 1316.12 333 1322.16 327.56 1893 325.3 1901.12 325 1902.53 324.95 \ 1903.94 324.89 1905.36 324.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1905.15 327.3 1912.04 324.56 1904.94 322.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1375.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="1375.6,337.5", pos="e,1913.6,324.5 1310.4,358.63 1309.3,350.77 1309.1,339.29 1316.1,333 1322.2,327.56 1893,325.3 1901.1,325 1902.5,324.95 1903.9,324.89 \ 1905.4,324.84"]; mutect2 [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 347.62 305.5 347.62 324.5 404.62 324.5 404.62 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 376.12 312.5 0 41 7 -mutect2 ", fillcolor="#F3CEA1", height=0.27778, label=mutect2, pos="376.12,315", rects="347.62,305.5,404.62,324.5", width=0.79167]; reference_genome_fasta_file -> mutect2 [_draw_="c 7 -#000000 B 13 1278.43 358.55 1263.44 355.19 1245.5 351.72 1229.12 350 1213.75 348.39 127.01 352.97 116.12 342 113.3 339.16 113.34 \ 335.88 116.12 333 124.13 324.7 296.73 326.47 339.42 324.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 339.45 327.22 346.26 324.28 339.11 322.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 175.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="175.62,337.5", pos="e,347.77,324.18 1278.4,358.55 1263.4,355.19 1245.5,351.72 1229.1,350 1213.7,348.39 127.01,352.97 116.12,342 113.3,339.16 113.34,\ 335.88 116.12,333 124.13,324.7 296.73,326.47 339.42,324.76"]; pileup_tumor [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2195.12 305.5 2195.12 324.5 2481.12 324.5 2481.12 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2338.12 312.5 0 270 55 -Computes the pileup of BAM files at specified positions ", height=0.27778, label="Computes the pileup of BAM files at specified positions", pos="2338.1,315", rects="2195.1,305.5,2481.1,324.5", width=3.9722]; reference_genome_fasta_file -> pileup_tumor [_draw_="c 7 -#000000 B 16 1346.63 358.52 1361.46 355.24 1379.05 351.84 1395.12 350 1461.82 342.35 1631.23 354.85 1697.12 342 1708.3 339.82 \ 1709.93 335.13 1721.12 333 1772.43 323.24 2138.93 327.04 2191.12 325 2192.36 324.95 2193.6 324.9 2194.85 324.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2194.76 327.31 2201.65 324.56 2194.55 322.41 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1780.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="1780.6,337.5", pos="e,2203.2,324.5 1346.6,358.52 1361.5,355.24 1379,351.84 1395.1,350 1461.8,342.35 1631.2,354.85 1697.1,342 1708.3,339.82 1709.9,335.13 \ 1721.1,333 1772.4,323.24 2138.9,327.04 2191.1,325 2192.4,324.95 2193.6,324.9 2194.9,324.85"]; hsmetrics_normal [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1201.62 305.5 1201.62 324.5 1546.62 324.5 1546.62 305.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1374.12 312.5 0 329 66 -Computes the capture statistics for hybrid capture sequencing data ", height=0.27778, label="Computes the capture statistics for hybrid capture sequencing data", pos="1374.1,315", rects="1201.6,305.5,1546.6,324.5", width=4.7917]; reference_genome_fasta_file -> hsmetrics_normal [_draw_="c 7 -#000000 B 16 1278.02 358.52 1263.11 355.2 1245.35 351.77 1229.12 350 1214.59 348.42 713.37 352.41 703.12 342 700.31 339.15 \ 700.32 335.85 703.12 333 712.57 323.39 1174.65 325.44 1188.12 325 1190.24 324.93 1192.38 324.86 1194.52 324.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1194.43 327.24 1201.34 324.55 1194.25 322.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 762.62 335.6 0 119 27 -reference_genome_fasta_file ", label=reference_genome_fasta_file, lp="762.62,337.5", pos="e,1202.8,324.49 1278,358.52 1263.1,355.2 1245.4,351.77 1229.1,350 1214.6,348.42 713.37,352.41 703.12,342 700.31,339.15 700.32,335.85 \ 703.12,333 712.57,323.39 1174.7,325.44 1188.1,325 1190.2,324.93 1192.4,324.86 1194.5,324.79"]; tpes [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1184.12 125.5 1184.12 144.5 1222.12 144.5 1222.12 125.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1203.12 132.5 0 22 4 -tpes ", fillcolor="#F3CEA1", height=0.27778, label=tpes, pos="1203.1,135", rects="1184.1,125.5,1222.1,144.5", width=0.52778]; bam_file_tumor -> tpes [_draw_="c 7 -#000000 B 28 1161.65 358.54 1152.48 355.18 1141.43 351.71 1131.12 350 1071.22 340.05 96.09 360.08 38.12 342 25.29 338 19.41 \ 336.88 13.12 325 -15.92 270.14 79.66 265.8 98.12 260 283.09 201.9 338.69 230.63 531.12 207 546.45 205.12 655.88 197.96 669.12 190 \ 678.42 184.41 673.59 175.18 683.12 170 705.2 158 884.04 163.55 909.12 162 1007.51 155.91 1124.04 144.29 1175.9 138.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1176.02 141.34 1182.72 138.18 1175.51 136.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 186.12 245.6 0 58 11 -sample_name ", label=sample_name, lp="186.12,247.5", pos="e,1184.2,138.02 1161.7,358.54 1152.5,355.18 1141.4,351.71 1131.1,350 1071.2,340.05 96.092,360.08 38.121,342 25.293,338 19.407,336.88 \ 13.121,325 -15.919,270.14 79.663,265.8 98.121,260 283.09,201.9 338.69,230.63 531.12,207 546.45,205.12 655.88,197.96 669.12,190 678.42,\ 184.41 673.59,175.18 683.12,170 705.2,158 884.04,163.55 909.12,162 1007.5,155.91 1124,144.29 1175.9,138.89"]; bam_file_tumor -> hsmetrics_tumor [_draw_="c 7 -#000000 B 16 1161.65 358.55 1152.48 355.19 1141.43 351.72 1131.12 350 1119.27 348.02 274.58 350.53 266.12 342 263.31 339.16 \ 263.32 335.86 266.12 333 273.74 325.22 647.23 325.25 658.12 325 715.12 323.7 777.25 322.17 833.41 320.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 833.21 323.2 840.14 320.57 833.08 318.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 283.62 335.6 0 35 8 -bam_file ", label=bam_file, lp="283.62,337.5", pos="e,841.65,320.53 1161.7,358.55 1152.5,355.19 1141.4,351.72 1131.1,350 1119.3,348.02 274.58,350.53 266.12,342 263.31,339.16 263.32,\ 335.86 266.12,333 273.74,325.22 647.23,325.25 658.12,325 715.12,323.7 777.25,322.17 833.41,320.74"]; bam_file_tumor -> cnvkit [_draw_="c 7 -#000000 B 16 1161.65 358.56 1152.48 355.21 1141.43 351.74 1131.12 350 1112.71 346.9 472.24 355.28 459.12 342 456.31 339.15 \ 456.3 335.84 459.12 333 469.78 322.27 1533.02 325.95 1548.12 325 1562.84 324.08 1579.07 322.26 1592.75 320.5 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1592.78 322.97 1599.4 319.62 1592.14 318.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 490.62 335.6 0 63 14 -bam_file_tumor ", label=bam_file_tumor, lp="490.62,337.5", pos="e,1600.9,319.42 1161.6,358.56 1152.5,355.21 1141.4,351.74 1131.1,350 1112.7,346.9 472.24,355.28 459.12,342 456.31,339.15 456.3,335.84 \ 459.12,333 469.78,322.27 1533,325.95 1548.1,325 1562.8,324.08 1579.1,322.26 1592.7,320.5"]; bam_file_tumor -> snvs_coverage [_draw_="c 7 -#000000 B 25 1161.65 358.54 1152.48 355.18 1141.43 351.71 1131.12 350 1116.19 347.52 51.79 352.74 41.12 342 38.3 339.16 38.34 \ 335.88 41.12 333 58.96 314.53 250.51 338.88 272.12 325 280.48 319.63 273.99 310.71 282.12 305 294.57 296.26 335.31 300.49 350.12 \ 297 361.62 294.29 363.57 290.46 375.12 288 407.78 281.05 495.52 275.94 552.7 273.22 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.52 275.68 559.39 272.91 552.29 270.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 313.62 313.1 0 63 14 -bam_file_tumor ", label=bam_file_tumor, lp="313.62,315", pos="e,560.91,272.84 1161.7,358.54 1152.5,355.18 1141.4,351.71 1131.1,350 1116.2,347.52 51.786,352.74 41.121,342 38.303,339.16 38.342,\ 335.88 41.121,333 58.964,314.53 250.51,338.88 272.12,325 280.48,319.63 273.99,310.71 282.12,305 294.57,296.26 335.31,300.49 350.12,\ 297 361.62,294.29 363.57,290.46 375.12,288 407.78,281.05 495.52,275.94 552.7,273.22"]; bam_file_tumor -> mutect2 [_draw_="c 7 -#000000 B 13 1161.65 358.54 1152.48 355.18 1141.43 351.71 1131.12 350 1116.23 347.53 54.76 352.71 44.12 342 41.3 339.16 41.33 \ 335.87 44.12 333 54.87 321.95 288.87 326.61 339.48 324.76 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 339.44 327.21 346.26 324.3 339.11 322.32 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 75.62 335.6 0 63 14 -bam_file_tumor ", label=bam_file_tumor, lp="75.621,337.5", pos="e,347.77,324.19 1161.7,358.54 1152.5,355.18 1141.4,351.71 1131.1,350 1116.2,347.53 54.757,352.71 44.121,342 41.303,339.16 41.33,\ 335.87 44.121,333 54.875,321.95 288.87,326.61 339.48,324.76"]; bam_file_tumor -> pileup_tumor [_draw_="c 7 -#000000 B 16 1161.65 358.57 1152.48 355.22 1141.43 351.74 1131.12 350 1115.01 347.27 554.59 353.63 543.12 342 540.31 339.15 \ 540.3 335.84 543.12 333 551.19 324.89 2179.68 325.38 2191.12 325 2192.94 324.94 2194.77 324.88 2196.61 324.81 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2196.32 327.27 2203.22 324.55 2196.13 322.38 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 560.62 335.6 0 35 8 -bam_file ", label=bam_file, lp="560.62,337.5", pos="e,2204.7,324.5 1161.6,358.57 1152.5,355.22 1141.4,351.74 1131.1,350 1115,347.27 554.59,353.63 543.12,342 540.31,339.15 540.3,335.84 \ 543.12,333 551.19,324.89 2179.7,325.38 2191.1,325 2192.9,324.94 2194.8,324.88 2196.6,324.81"]; log_to_file -> tpes [_draw_="c 7 -#000000 B 16 1516.07 358.61 1509.28 355.26 1501.02 351.78 1493.12 350 1474.91 345.88 1170.17 355.36 1157.12 342 1154.33 339.14 \ 1154.68 336.17 1157.12 333 1165.53 322.06 1178.13 335.47 1187.12 325 1229.86 275.27 1215.79 188.55 1207.43 152.48 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.87 152.14 1205.83 145.92 1205.11 153.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1237.12 245.6 0 42 11 -log_to_file ", label=log_to_file, lp="1237.1,247.5", pos="e,1205.5,144.45 1516.1,358.61 1509.3,355.26 1501,351.78 1493.1,350 1474.9,345.88 1170.2,355.36 1157.1,342 1154.3,339.14 1154.7,336.17 \ 1157.1,333 1165.5,322.06 1178.1,335.47 1187.1,325 1229.9,275.27 1215.8,188.55 1207.4,152.48"]; merge_log_files [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1555.12 80.5 1555.12 99.5 1649.12 99.5 1649.12 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1602.12 87.5 0 78 15 -merge_log_files ", height=0.27778, label=merge_log_files, pos="1602.1,90", rects="1555.1,80.5,1649.1,99.5", width=1.3056]; log_to_file -> merge_log_files [_draw_="c 7 -#000000 B 19 1545.75 358.63 1552.37 355.28 1560.41 351.8 1568.12 350 1582.89 346.54 1828.76 350.81 1841.12 342 1855.44 331.8 \ 1844.39 318.93 1855.12 305 1862.37 295.6 1931.17 247.58 1942.12 243 2027.45 207.28 2087.63 277.84 2147.12 207 2212.1 129.61 1808.03 \ 101.28 1657.22 93.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.57 91.04 1650.46 93.13 1657.32 95.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2160.12 223.1 0 42 11 -log_to_file ", label=log_to_file, lp="2160.1,225", pos="e,1648.9,93.053 1545.8,358.63 1552.4,355.28 1560.4,351.8 1568.1,350 1582.9,346.54 1828.8,350.81 1841.1,342 1855.4,331.8 1844.4,318.93 \ 1855.1,305 1862.4,295.6 1931.2,247.58 1942.1,243 2027.4,207.28 2087.6,277.84 2147.1,207 2212.1,129.61 1808,101.28 1657.2,93.474"]; log_to_file -> hsmetrics_tumor [_draw_="c 7 -#000000 B 10 1516.08 358.58 1509.28 355.22 1501.02 351.75 1493.12 350 1479.1 346.89 986.2 352.23 976.12 342 971.18 336.98 974.14 \ 332.34 980.15 328.4 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 981.27 330.58 986.31 325.14 978.97 326.25 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 997.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="997.12,337.5", pos="e,987.64,324.43 1516.1,358.58 1509.3,355.22 1501,351.75 1493.1,350 1479.1,346.89 986.2,352.23 976.12,342 971.18,336.98 974.14,332.34 \ 980.15,328.4"]; merge_vep_snvs_coverage [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 604.12 215.5 604.12 234.5 854.12 234.5 854.12 215.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729.12 222.5 0 234 44 -Merges SNV coverage data with VEP annotation ", height=0.27778, label="Merges SNV coverage data with VEP annotation", pos="729.12,225", rects="604.12,215.5,854.12,234.5", width=3.4722]; log_to_file -> merge_vep_snvs_coverage [_draw_="c 7 -#000000 B 19 1516.08 358.58 1509.29 355.22 1501.02 351.75 1493.12 350 1436.7 337.5 1030.03 352.02 973.12 342 961.08 339.88 \ 959.09 335.48 947.12 333 923.99 328.21 861.43 337.07 841.12 325 803.82 302.83 822.96 268.87 788.12 243 785.5 241.05 782.66 239.33 \ 779.7 237.8 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 780.88 235.65 773.49 235.02 778.87 240.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 839.12 290.6 0 42 11 -log_to_file ", label=log_to_file, lp="839.12,292.5", pos="e,772.11,234.4 1516.1,358.58 1509.3,355.22 1501,351.75 1493.1,350 1436.7,337.5 1030,352.02 973.12,342 961.08,339.88 959.09,335.48 \ 947.12,333 923.99,328.21 861.43,337.07 841.12,325 803.82,302.83 822.96,268.87 788.12,243 785.5,241.05 782.66,239.33 779.7,237.8"]; log_to_file -> cnvkit [_draw_="c 7 -#000000 B 10 1546.53 358.52 1553.01 355.32 1560.75 351.99 1568.12 350 1586.01 345.18 1638.66 355.72 1651.12 342 1655.06 337.66 \ 1652.89 333.16 1648.42 329.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1650.16 327.38 1643.05 325.26 1647.28 331.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1675.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="1675.1,337.5", pos="e,1641.8,324.38 1546.5,358.52 1553,355.32 1560.7,351.99 1568.1,350 1586,345.18 1638.7,355.72 1651.1,342 1655.1,337.66 1652.9,333.16 \ 1648.4,329.15"]; spia [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2213.62 260.5 2213.62 279.5 2250.62 279.5 2250.62 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2232.12 267.5 0 21 4 -spia ", fillcolor="#F3CEA1", height=0.27778, label=spia, pos="2232.1,270", rects="2213.6,260.5,2250.6,279.5", width=0.51389]; log_to_file -> spia [_draw_="c 7 -#000000 B 13 1545.75 358.62 1552.36 355.28 1560.41 351.8 1568.12 350 1583.49 346.41 1839.85 351.93 1852.12 342 1865.28 331.36 \ 1848.2 315.93 1861.12 305 1889.22 281.24 2143.46 287.76 2205.46 280.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2205.69 282.56 2212.2 279.01 2204.89 277.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1882.12 313.1 0 42 11 -log_to_file ", label=log_to_file, lp="1882.1,315", pos="e,2213.7,278.76 1545.8,358.62 1552.4,355.28 1560.4,351.8 1568.1,350 1583.5,346.41 1839.8,351.93 1852.1,342 1865.3,331.36 1848.2,\ 315.93 1861.1,305 1889.2,281.24 2143.5,287.76 2205.5,280.12"]; log_to_file -> snvs_coverage [_draw_="c 7 -#000000 B 16 1516.08 358.55 1509.29 355.19 1501.03 351.72 1493.12 350 1479.05 346.94 466.27 352.22 456.12 342 453.3 339.16 \ 453.37 335.9 456.12 333 467.68 320.81 595.56 337.19 607.12 325 616.47 315.14 614.6 299.15 611.21 287.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 613.6 286.54 609.09 280.65 608.94 288.07 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 635.12 313.1 0 42 11 -log_to_file ", label=log_to_file, lp="635.12,315", pos="e,608.62,279.21 1516.1,358.55 1509.3,355.19 1501,351.72 1493.1,350 1479,346.94 466.27,352.22 456.12,342 453.3,339.16 453.37,335.9 \ 456.12,333 467.68,320.81 595.56,337.19 607.12,325 616.47,315.14 614.6,299.15 611.21,287.12"]; log_to_file -> vep [_draw_="c 7 -#000000 B 16 1516.09 358.54 1509.29 355.19 1501.03 351.72 1493.12 350 1428.78 336.04 372.57 355.45 308.12 342 298.18 339.92 \ 296.9 335.72 287.12 333 274.58 329.52 237.67 334.81 229.12 325 217.66 311.85 233.26 295.44 248 284.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.15 286.38 253.38 280.29 246.28 282.4 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 250.12 313.1 0 42 11 -log_to_file ", label=log_to_file, lp="250.12,315", pos="e,254.61,279.4 1516.1,358.54 1509.3,355.19 1501,351.72 1493.1,350 1428.8,336.04 372.57,355.45 308.12,342 298.18,339.92 296.9,335.72 \ 287.12,333 274.58,329.52 237.67,334.81 229.12,325 217.66,311.85 233.26,295.44 248,284.18"]; ethseq [_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 2603.12 260.5 2603.12 279.5 2653.12 279.5 2653.12 260.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2628.12 267.5 0 34 6 -ethseq ", fillcolor="#F3CEA1", height=0.27778, label=ethseq, pos="2628.1,270", rects="2603.1,260.5,2653.1,279.5", width=0.69444]; log_to_file -> ethseq [_draw_="c 7 -#000000 B 16 1545.74 358.55 1552.34 355.19 1560.39 351.72 1568.12 350 1584.17 346.43 2740.53 353.67 2752.12 342 2754.94 339.16 \ 2754.87 335.91 2752.12 333 2731.19 310.82 2636.05 347.18 2615.12 325 2605.35 314.64 2611.18 298.27 2617.86 286.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2619.88 287.66 2621.43 280.41 2615.69 285.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2636.12 313.1 0 42 11 -log_to_file ", label=log_to_file, lp="2636.1,315", pos="e,2622.2,279.11 1545.7,358.55 1552.3,355.19 1560.4,351.72 1568.1,350 1584.2,346.43 2740.5,353.67 2752.1,342 2754.9,339.16 2754.9,\ 335.91 2752.1,333 2731.2,310.82 2636,347.18 2615.1,325 2605.4,314.64 2611.2,298.27 2617.9,286.26"]; clonet [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1456.62 170.5 1456.62 189.5 2135.62 189.5 2135.62 170.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1796.12 177.5 0 663 131 -Infers tumor purity and ploidy and computes corrected copy numbers, allelespecific \ copy numbers and clonality of segments and SNVs. ", height=0.27778, label="Infers tumor purity and ploidy and computes corrected copy numbers, allele specific copy numbers and clonality of segments and SNVs.", pos="1796.1,180", rects="1456.6,170.5,2135.6,189.5", width=9.4306]; log_to_file -> clonet [_draw_="c 7 -#000000 B 19 1546.14 358.57 1552.69 355.3 1560.58 351.9 1568.12 350 1595.98 343 1672.46 356.72 1697.12 342 1713.75 332.07 1706.94 \ 319.18 1720.12 305 1724.24 300.57 1726.29 300.63 1731.12 297 1757.21 277.4 1773.35 280.56 1789.12 252 1798.34 235.3 1799 212.99 \ 1798.06 197.87 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1800.51 197.77 1797.47 191.01 1795.63 198.19 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1805.12 268.1 0 42 11 -log_to_file ", label=log_to_file, lp="1805.1,270", pos="e,1797.3,189.5 1546.1,358.57 1552.7,355.3 1560.6,351.9 1568.1,350 1596,343 1672.5,356.72 1697.1,342 1713.7,332.07 1706.9,319.18 \ 1720.1,305 1724.2,300.57 1726.3,300.63 1731.1,297 1757.2,277.4 1773.3,280.56 1789.1,252 1798.3,235.3 1799,212.99 1798.1,197.87"]; log_to_file -> pileup_normal [_draw_="c 7 -#000000 B 13 1545.74 358.59 1552.35 355.24 1560.4 351.76 1568.12 350 1616.01 339.07 1963.66 357.95 2010.12 342 2016.43 339.83 \ 2016.66 336.83 2022.12 333 2024.03 331.67 2026.03 330.3 2028.04 328.95 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2029.03 331.22 2033.52 325.32 2026.33 327.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2043.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="2043.1,337.5", pos="e,2034.8,324.49 1545.7,358.59 1552.4,355.24 1560.4,351.76 1568.1,350 1616,339.07 1963.7,357.95 2010.1,342 2016.4,339.83 2016.7,336.83 \ 2022.1,333 2024,331.67 2026,330.3 2028,328.95"]; log_to_file -> mutect2 [_draw_="c 7 -#000000 B 10 1516.09 358.55 1509.29 355.19 1501.03 351.72 1493.12 350 1463.37 343.53 424.54 355.22 397.12 342 392.3 339.67 \ 388.23 335.65 384.99 331.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 387.11 330.21 381.18 325.75 383.03 332.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 418.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="418.12,337.5", pos="e,380.34,324.49 1516.1,358.55 1509.3,355.19 1501,351.72 1493.1,350 1463.4,343.53 424.54,355.22 397.12,342 392.3,339.67 388.23,335.65 \ 384.99,331.45"]; log_to_file -> pileup_tumor [_draw_="c 7 -#000000 B 13 1545.74 358.58 1552.35 355.23 1560.4 351.75 1568.12 350 1594.83 343.93 2036.22 353.42 2061.12 342 2065.98 339.77 \ 2064.31 335.35 2069.12 333 2069.91 332.62 2128.7 328.88 2191.11 325.01 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2191.19 327.46 2198.03 324.58 2190.89 322.57 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2090.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="2090.1,337.5", pos="e,2199.5,324.48 1545.7,358.58 1552.4,355.23 1560.4,351.75 1568.1,350 1594.8,343.93 2036.2,353.42 2061.1,342 2066,339.77 2064.3,335.35 \ 2069.1,333 2069.9,332.62 2128.7,328.88 2191.1,325.01"]; log_to_file -> hsmetrics_normal [_draw_="c 7 -#000000 B 13 1516.06 358.65 1509.27 355.31 1501.01 351.83 1493.12 350 1480.77 347.14 1273.92 351.12 1265.12 342 1262.34 339.12 \ 1262.52 336.04 1265.12 333 1266.98 330.83 1269.89 328.93 1273.58 327.28 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1274.39 329.59 1280.14 324.89 1272.72 324.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1286.12 335.6 0 42 11 -log_to_file ", label=log_to_file, lp="1286.1,337.5", pos="e,1281.6,324.38 1516.1,358.65 1509.3,355.31 1501,351.83 1493.1,350 1480.8,347.14 1273.9,351.12 1265.1,342 1262.3,339.12 1262.5,336.04 \ 1265.1,333 1267,330.83 1269.9,328.93 1273.6,327.28"]; threads -> snvs_coverage [_draw_="c 7 -#000000 B 19 2615.55 358.57 2621.01 355.3 2627.64 351.9 2634.12 350 2646.73 346.31 2743.15 351.6 2752.12 342 2754.85 339.08 \ 2754.88 335.89 2752.12 333 2745.36 325.92 2585.83 326.26 2576.12 325 2534.19 319.58 2525.12 309.85 2483.12 305 2459.82 302.31 959.63 \ 276.96 657.71 271.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 658.1 269.44 651.06 271.77 658.02 274.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2592.12 313.1 0 32 7 -threads ", label=threads, lp="2592.1,315", pos="e,649.55,271.75 2615.5,358.57 2621,355.3 2627.6,351.9 2634.1,350 2646.7,346.31 2743.1,351.6 2752.1,342 2754.9,339.08 2754.9,335.89 \ 2752.1,333 2745.4,325.92 2585.8,326.26 2576.1,325 2534.2,319.58 2525.1,309.85 2483.1,305 2459.8,302.31 959.63,276.96 657.71,271.88"]; threads -> ethseq [_draw_="c 7 -#000000 B 10 2615.53 358.52 2620.99 355.24 2627.63 351.84 2634.12 350 2650.6 345.32 2776.32 354.43 2788.12 342 2828.21 299.78 \ 2718.69 280.99 2661.03 274.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2661.66 271.81 2654.43 273.46 2661.11 276.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2812.12 313.1 0 32 7 -threads ", label=threads, lp="2812.1,315", pos="e,2652.9,273.29 2615.5,358.52 2621,355.24 2627.6,351.84 2634.1,350 2650.6,345.32 2776.3,354.43 2788.1,342 2828.2,299.78 2718.7,280.99 \ 2661,274.2"]; threads -> clonet [_draw_="c 7 -#000000 B 28 2615.54 358.56 2621 355.29 2627.64 351.89 2634.12 350 2647.27 346.17 2747.76 351.99 2757.12 342 2759.86 339.08 \ 2759.83 335.94 2757.12 333 2742.78 317.4 2680.48 335.56 2662.12 325 2652.72 319.59 2657.7 310.1 2648.12 305 2628.07 294.31 2261.61 \ 300.3 2239.12 297 2150.57 284.02 2132.56 262.1 2045.12 243 2023.13 238.2 2017.12 239.73 1995.12 235 1937.29 222.56 1871.2 203.68 \ 1831.61 191.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1832.44 189.55 1825.03 189.88 1831.03 194.24 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2179.12 268.1 0 32 7 -threads ", label=threads, lp="2179.1,270", pos="e,1823.6,189.45 2615.5,358.56 2621,355.29 2627.6,351.89 2634.1,350 2647.3,346.17 2747.8,351.99 2757.1,342 2759.9,339.08 2759.8,335.94 \ 2757.1,333 2742.8,317.4 2680.5,335.56 2662.1,325 2652.7,319.59 2657.7,310.1 2648.1,305 2628.1,294.31 2261.6,300.3 2239.1,297 2150.6,\ 284.02 2132.6,262.1 2045.1,243 2023.1,238.2 2017.1,239.73 1995.1,235 1937.3,222.56 1871.2,203.68 1831.6,191.86"]; threads -> pileup_normal [_draw_="c 7 -#000000 B 16 2616.64 358.6 2621.95 355.57 2628.18 352.33 2634.12 350 2647.77 344.65 2657.1 353.56 2666.12 342 2668.58 338.85 \ 2668.93 335.85 2666.12 333 2656.95 323.67 2208.2 325.51 2195.12 325 2193.88 324.95 2192.64 324.9 2191.39 324.85 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2191.69 322.41 2184.6 324.56 2191.49 327.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2683.12 335.6 0 32 7 -threads ", label=threads, lp="2683.1,337.5", pos="e,2183.1,324.5 2616.6,358.6 2621.9,355.57 2628.2,352.33 2634.1,350 2647.8,344.65 2657.1,353.56 2666.1,342 2668.6,338.85 2668.9,335.85 \ 2666.1,333 2656.9,323.67 2208.2,325.51 2195.1,325 2193.9,324.95 2192.6,324.9 2191.4,324.85"]; threads -> pileup_tumor [_draw_="c 7 -#000000 B 13 2615.58 358.67 2621.04 355.42 2627.67 352 2634.12 350 2668.84 339.24 2739.28 359.24 2714.12 333 2706.77 325.33 \ 2533.73 325.48 2523.12 325 2512.13 324.5 2500.78 323.98 2489.36 323.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2489.65 321 2482.54 323.12 2489.42 325.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2735.12 335.6 0 32 7 -threads ", label=threads, lp="2735.1,337.5", pos="e,2481,323.05 2615.6,358.67 2621,355.42 2627.7,352 2634.1,350 2668.8,339.24 2739.3,359.24 2714.1,333 2706.8,325.33 2533.7,325.48 \ 2523.1,325 2512.1,324.5 2500.8,323.98 2489.4,323.44"]; bam_file_normal -> cnvkit [_draw_="c 7 -#000000 B 13 1469.07 358.55 1477.89 355.68 1487.9 352.56 1497.12 350 1512.08 345.85 1517.06 348.57 1531.12 342 1537.16 339.18 \ 1537.05 335.75 1543.12 333 1558.69 325.95 1577.29 321.78 1592.73 319.34 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1592.87 321.79 1599.44 318.37 1592.17 316.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1576.62 335.6 0 67 15 -bam_file_normal ", label=bam_file_normal, lp="1576.6,337.5", pos="e,1600.9,318.15 1469.1,358.55 1477.9,355.68 1487.9,352.56 1497.1,350 1512.1,345.85 1517.1,348.57 1531.1,342 1537.2,339.18 1537,335.75 \ 1543.1,333 1558.7,325.95 1577.3,321.78 1592.7,319.34"]; bam_file_normal -> snvs_coverage [_draw_="c 7 -#000000 B 19 1422.82 358.54 1413.29 355.18 1401.81 351.72 1391.12 350 1377.37 347.79 397.93 351.89 388.12 342 385.3 339.16 \ 385.37 335.91 388.12 333 399.13 321.36 518.56 333.54 532.12 325 540.71 319.6 535.94 312.17 543.12 305 552.3 295.84 564.45 288.45 \ 575.57 282.93 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 576.39 285.25 581.68 280.05 574.31 280.81 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 576.62 313.1 0 67 15 -bam_file_normal ", label=bam_file_normal, lp="576.62,315", pos="e,583.05,279.41 1422.8,358.54 1413.3,355.18 1401.8,351.72 1391.1,350 1377.4,347.79 397.93,351.89 388.12,342 385.3,339.16 385.37,\ 335.91 388.12,333 399.13,321.36 518.56,333.54 532.12,325 540.71,319.6 535.94,312.17 543.12,305 552.3,295.84 564.45,288.45 575.57,\ 282.93"]; bam_file_normal -> pileup_normal [_draw_="c 7 -#000000 B 16 1466.51 358.52 1475.84 355.32 1486.88 351.99 1497.12 350 1521.18 345.34 1585.14 352.85 1607.12 342 1611.92 339.63 \ 1610.27 335.26 1615.12 333 1629.53 326.29 1885.24 325.71 1901.12 325 1901.9 324.97 1902.69 324.93 1903.47 324.89 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1903.59 327.34 1910.47 324.57 1903.36 322.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1632.62 335.6 0 35 8 -bam_file ", label=bam_file, lp="1632.6,337.5", pos="e,1912,324.49 1466.5,358.52 1475.8,355.32 1486.9,351.99 1497.1,350 1521.2,345.34 1585.1,352.85 1607.1,342 1611.9,339.63 1610.3,335.26 \ 1615.1,333 1629.5,326.29 1885.2,325.71 1901.1,325 1901.9,324.97 1902.7,324.93 1903.5,324.89"]; bam_file_normal -> mutect2 [_draw_="c 7 -#000000 B 13 1422.82 358.54 1413.29 355.18 1401.81 351.71 1391.12 350 1376.3 347.62 320.7 352.66 310.12 342 307.3 339.16 307.65 \ 336.14 310.12 333 317.99 322.99 325.67 326.86 339.4 325.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 339.76 327.76 346.2 324.08 338.88 322.94 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 343.62 335.6 0 67 15 -bam_file_normal ", label=bam_file_normal, lp="343.62,337.5", pos="e,347.69,323.81 1422.8,358.54 1413.3,355.18 1401.8,351.71 1391.1,350 1376.3,347.62 320.7,352.66 310.12,342 307.3,339.16 307.65,336.14 \ 310.12,333 317.99,322.99 325.67,326.86 339.4,325.33"]; bam_file_normal -> hsmetrics_normal [_draw_="c 7 -#000000 B 16 1422.55 358.52 1413.07 355.2 1401.7 351.77 1391.12 350 1380.98 348.3 1028.31 349.35 1021.12 342 1018.32 339.14 \ 1018.36 335.9 1021.12 333 1027.53 326.28 1178.84 325.45 1188.12 325 1189.96 324.91 1191.8 324.82 1193.66 324.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1193.46 327.2 1200.34 324.41 1193.23 322.3 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1038.62 335.6 0 35 8 -bam_file ", label=bam_file, lp="1038.6,337.5", pos="e,1201.8,324.34 1422.6,358.52 1413.1,355.2 1401.7,351.77 1391.1,350 1381,348.3 1028.3,349.35 1021.1,342 1018.3,339.14 1018.4,335.9 \ 1021.1,333 1027.5,326.28 1178.8,325.45 1188.1,325 1190,324.91 1191.8,324.82 1193.7,324.73"]; kit_target_bed_file -> cnvkit [_draw_="c 7 -#000000 B 10 2381.07 358.64 2357.52 349.44 2320.74 335.62 2306.12 333 2242.13 321.55 1786.04 328.45 1721.12 325 1699.3 323.84 \ 1674.79 321.56 1655.87 319.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.33 317.17 1649.11 318.86 1655.81 322.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2364.62 335.6 0 61 15 -target_bed_file ", label=target_bed_file, lp="2364.6,337.5", pos="e,1647.6,318.7 2381.1,358.64 2357.5,349.44 2320.7,335.62 2306.1,333 2242.1,321.55 1786,328.45 1721.1,325 1699.3,323.84 1674.8,321.56 \ 1655.9,319.58"]; kit_target_bed_file -> pileup_normal [_draw_="c 7 -#000000 B 10 2404.12 358.71 2405.45 350.89 2405.9 339.46 2399.12 333 2390.91 325.18 2206.45 325.57 2195.12 325 2194.5 324.97 \ 2193.87 324.94 2193.25 324.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2193.68 322.47 2186.56 324.56 2193.42 327.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2436.62 335.6 0 67 16 -regions_bed_file ", label=regions_bed_file, lp="2436.6,337.5", pos="e,2185,324.48 2404.1,358.71 2405.5,350.89 2405.9,339.46 2399.1,333 2390.9,325.18 2206.4,325.57 2195.1,325 2194.5,324.97 2193.9,324.94 \ 2193.2,324.91"]; kit_target_bed_file -> mutect2 [_draw_="c 7 -#000000 B 13 2379.16 358.55 2368.9 355.19 2356.56 351.72 2345.12 350 2320.26 346.26 1463.01 352.4 1440.12 342 1435.25 339.79 \ 1436.99 335.21 1432.12 333 1407.25 321.72 512.44 328.41 412.53 324.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 412.95 322.43 405.81 324.46 412.65 327.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1485.12 335.6 0 90 24 -kit_target_interval_file ", label=kit_target_interval_file, lp="1485.1,337.5", pos="e,404.3,324.36 2379.2,358.55 2368.9,355.19 2356.6,351.72 2345.1,350 2320.3,346.26 1463,352.4 1440.1,342 1435.2,339.79 1437,335.21 \ 1432.1,333 1407.3,321.72 512.44,328.41 412.53,324.86"]; kit_target_bed_file -> pileup_tumor [_draw_="c 7 -#000000 B 10 2431.82 358.6 2450.82 352.93 2472.39 345.81 2475.12 342 2477.45 338.75 2477.77 336 2475.12 333 2473.31 330.95 \ 2470.72 329.13 2467.53 327.51 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2468.95 325.45 2461.54 325.05 2467.08 329.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2509.62 335.6 0 67 16 -regions_bed_file ", label=regions_bed_file, lp="2509.6,337.5", pos="e,2460.1,324.48 2431.8,358.6 2450.8,352.93 2472.4,345.81 2475.1,342 2477.4,338.75 2477.8,336 2475.1,333 2473.3,330.95 2470.7,329.13 \ 2467.5,327.51"]; vep_data_directory -> vep [_draw_="c 7 -#000000 B 7 1021.13 366.74 805.8 365.59 30.89 360.19 13.12 342 -24.76 303.22 26.41 285.11 92.6 276.84 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 92.58 279.31 99.24 276.06 92 274.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 44.12 313.1 0 78 18 -vep_data_directory ", label=vep_data_directory, lp="44.121,315", pos="e,100.74,275.88 1021.1,366.74 805.8,365.59 30.887,360.19 13.121,342 -24.755,303.22 26.409,285.11 92.602,276.84"]; snps_in_kit_vcf_file -> pileup_normal [_draw_="c 7 -#000000 B 10 2530.67 358.56 2541.15 351.47 2552.14 341.2 2544.12 333 2537.34 326.07 2204.81 325.41 2195.12 325 2194.04 324.95 \ 2192.96 324.91 2191.87 324.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2192.09 322.42 2184.99 324.55 2191.87 327.31 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2572.12 335.6 0 52 13 -snps_vcf_file ", label=snps_vcf_file, lp="2572.1,337.5", pos="e,2183.5,324.48 2530.7,358.56 2541.1,351.47 2552.1,341.2 2544.1,333 2537.3,326.07 2204.8,325.41 2195.1,325 2194,324.95 2193,324.91 \ 2191.9,324.86"]; snps_in_kit_vcf_file -> pileup_tumor [_draw_="c 7 -#000000 B 13 2544.72 358.54 2554.63 355.7 2565.83 352.6 2576.12 350 2592.01 345.99 2601.86 354.79 2612.12 342 2614.62 338.88 \ 2614.86 335.91 2612.12 333 2609.72 330.44 2551.59 326.65 2489.5 323.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2489.74 320.85 2482.62 322.92 2489.48 325.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2639.12 335.6 0 52 13 -snps_vcf_file ", label=snps_vcf_file, lp="2639.1,337.5", pos="e,2481.1,322.84 2544.7,358.54 2554.6,355.7 2565.8,352.6 2576.1,350 2592,345.99 2601.9,354.79 2612.1,342 2614.6,338.88 2614.9,335.91 \ 2612.1,333 2609.7,330.44 2551.6,326.65 2489.5,323.29"]; ethseq_snps_gds_file -> ethseq [_draw_="c 7 -#000000 B 7 2897.97 358.78 2903.37 345.88 2911.26 320.73 2899.12 305 2884.77 286.42 2730.46 276.24 2661.31 272.58 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2661.55 270.14 2654.43 272.23 2661.3 275.04 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2935.62 313.1 0 61 14 -model_gds_file ", label=model_gds_file, lp="2935.6,315", pos="e,2652.9,272.15 2898,358.78 2903.4,345.88 2911.3,320.73 2899.1,305 2884.8,286.42 2730.5,276.24 2661.3,272.58"]; spia_snps_vcf_file -> spia [_draw_="c 7 -#000000 B 22 2712.06 358.58 2721.74 355.62 2732.87 352.43 2743.12 350 2753 347.66 2781.6 349.79 2788.12 342 2790.69 338.93 \ 2790.85 335.92 2788.12 333 2770.02 313.64 2691.47 339.25 2669.12 325 2660.57 319.55 2666.7 310.42 2658.12 305 2645.32 296.92 2537.22 \ 298.12 2522.12 297 2424.91 289.78 2309.59 278.69 2258.61 273.65 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2259.14 271.24 2251.93 272.99 2258.66 276.12 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2695.12 313.1 0 52 14 -snps_list_file ", label=snps_list_file, lp="2695.1,315", pos="e,2250.4,272.84 2712.1,358.58 2721.7,355.62 2732.9,352.43 2743.1,350 2753,347.66 2781.6,349.79 2788.1,342 2790.7,338.93 2790.9,335.92 \ 2788.1,333 2770,313.64 2691.5,339.25 2669.1,325 2660.6,319.55 2666.7,310.42 2658.1,305 2645.3,296.92 2537.2,298.12 2522.1,297 2424.9,\ 289.78 2309.6,278.69 2258.6,273.65"]; kit_bait_interval_file -> hsmetrics_tumor [_draw_="c 7 -#000000 B 10 1953.09 358.55 1941.92 355.2 1928.5 351.73 1916.12 350 1823.68 337.11 1167.54 360.85 1076.12 342 1074.19 341.6 \ 1057.08 334.4 1041.31 327.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1042.55 325.54 1035.15 325.05 1040.62 330.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1116.62 335.6 0 81 22 -kit_bait_interval_file ", label=kit_bait_interval_file, lp="1116.6,337.5", pos="e,1033.8,324.45 1953.1,358.55 1941.9,355.2 1928.5,351.73 1916.1,350 1823.7,337.11 1167.5,360.85 1076.1,342 1074.2,341.6 1057.1,334.4 \ 1041.3,327.68"]; kit_bait_interval_file -> hsmetrics_normal [_draw_="c 7 -#000000 B 10 1961.1 358.66 1942.04 349.49 1912.23 335.69 1900.12 333 1867.35 325.71 1631.67 326.12 1598.12 325 1584.01 324.53 \ 1569.4 324.01 1554.71 323.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1555.15 321.03 1548.06 323.22 1554.96 325.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1962.62 335.6 0 81 22 -kit_bait_interval_file ", label=kit_bait_interval_file, lp="1962.6,337.5", pos="e,1546.5,323.17 1961.1,358.66 1942,349.49 1912.2,335.69 1900.1,333 1867.4,325.71 1631.7,326.12 1598.1,325 1584,324.53 1569.4,324.01 \ 1554.7,323.47"]; create_reports -> tpes [_draw_="c 7 -#000000 B 28 2802.57 358.6 2809.42 354.41 2816.95 348.78 2822.12 342 2832.22 328.75 2838.01 318.41 2828.12 305 2812.93 284.41 \ 2798.32 292.41 2773.12 288 2697.74 274.82 2675.07 299.69 2601.12 280 2582.3 274.99 2580.48 266.52 2562.12 260 2455.91 222.27 2402.04 \ 277.53 2314.12 207 2300 195.68 2312.22 179.98 2297.12 170 2255.86 142.72 1456.55 146.78 1407.12 145 1343.72 142.71 1269.26 139.22 \ 1230.2 137.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1230.58 134.9 1223.47 137.01 1230.34 139.79 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2562.12 245.6 0 56 13 -plot_filename ", label=plot_filename, lp="2562.1,247.5", pos="e,1222,136.93 2802.6,358.6 2809.4,354.41 2817,348.78 2822.1,342 2832.2,328.75 2838,318.41 2828.1,305 2812.9,284.41 2798.3,292.41 \ 2773.1,288 2697.7,274.82 2675.1,299.69 2601.1,280 2582.3,274.99 2580.5,266.52 2562.1,260 2455.9,222.27 2402,277.53 2314.1,207 2300,\ 195.68 2312.2,179.98 2297.1,170 2255.9,142.72 1456.6,146.78 1407.1,145 1343.7,142.71 1269.3,139.22 1230.2,137.33"]; create_reports -> spia [_draw_="c 7 -#000000 B 13 2790.99 358.69 2794.74 351.09 2798.33 339.99 2792.12 333 2782.17 321.79 2736.81 334.39 2725.12 325 2717.78 319.1 \ 2725.6 310.72 2718.12 305 2708.92 297.96 2359.36 278.06 2258.88 272.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2259.11 270.03 2251.99 272.09 2258.84 274.93 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2753.12 313.1 0 56 13 -plot_filename ", label=plot_filename, lp="2753.1,315", pos="e,2250.5,272.01 2791,358.69 2794.7,351.09 2798.3,339.99 2792.1,333 2782.2,321.79 2736.8,334.39 2725.1,325 2717.8,319.1 2725.6,310.72 \ 2718.1,305 2708.9,297.96 2359.4,278.06 2258.9,272.47"]; create_reports -> ethseq [_draw_="c 7 -#000000 B 10 2812.72 358.5 2825.75 353.75 2839.43 347.65 2843.12 342 2857.04 320.7 2847.33 298.41 2824.12 288 2795.82 275.31 \ 2709.05 272.07 2661 271.26 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2661.33 268.81 2654.29 271.16 2661.26 273.71 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2873.62 313.1 0 49 11 -enable_plot ", label=enable_plot, lp="2873.6,315", pos="e,2652.8,271.14 2812.7,358.5 2825.8,353.75 2839.4,347.65 2843.1,342 2857,320.7 2847.3,298.41 2824.1,288 2795.8,275.31 2709,272.07 \ 2661,271.26"]; create_reports -> clonet [_draw_="c 7 -#000000 B 16 2797.26 358.63 2812.81 345.96 2837.49 321.64 2822.12 305 2798.45 279.37 2543.65 284.98 2509.12 280 2352.71 257.44 \ 2313.17 250.09 2161.12 207 2149.76 203.78 2147.7 200.32 2136.12 198 2120.16 194.8 2095.34 192.19 2066.2 190.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2066.53 187.64 2059.38 189.59 2066.19 192.52 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2537.12 268.1 0 56 13 -plot_filename ", label=plot_filename, lp="2537.1,270", pos="e,2057.9,189.48 2797.3,358.63 2812.8,345.96 2837.5,321.64 2822.1,305 2798.5,279.37 2543.7,284.98 2509.1,280 2352.7,257.44 2313.2,\ 250.09 2161.1,207 2149.8,203.78 2147.7,200.32 2136.1,198 2120.2,194.8 2095.3,192.19 2066.2,190.07"]; cnvkit_accessible_regions_bed -> cnvkit [_draw_="c 7 -#000000 B 16 1767.32 358.53 1782.87 355.26 1801.29 351.86 1818.12 350 1834.36 348.2 2100.73 353.71 2112.12 342 2114.91 339.13 \ 2114.92 335.86 2112.12 333 2104.52 325.24 1731.97 325.61 1721.12 325 1699.3 323.77 1674.8 321.49 1655.88 319.53 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1656.33 317.11 1649.11 318.82 1655.82 321.99 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2163.12 335.6 0 98 22 -accessible_regions_bed ", label=accessible_regions_bed, lp="2163.1,337.5", pos="e,1647.6,318.66 1767.3,358.53 1782.9,355.26 1801.3,351.86 1818.1,350 1834.4,348.2 2100.7,353.71 2112.1,342 2114.9,339.13 2114.9,\ 335.86 2112.1,333 2104.5,325.24 1732,325.61 1721.1,325 1699.3,323.77 1674.8,321.49 1655.9,319.53"]; kit_target_interval_file -> hsmetrics_tumor [_draw_="c 7 -#000000 B 13 2077.02 358.55 2064.94 355.2 2050.45 351.73 2037.12 350 1989.46 343.82 1218.84 353.26 1172.12 342 1163.43 339.9 \ 1162.69 335.58 1154.12 333 1144.96 330.24 1135.34 327.93 1125.61 326 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1126.23 323.62 1118.9 324.74 1125.33 328.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1217.12 335.6 0 90 24 -kit_target_interval_file ", label=kit_target_interval_file, lp="1217.1,337.5", pos="e,1117.4,324.46 2077,358.55 2064.9,355.2 2050.4,351.73 2037.1,350 1989.5,343.82 1218.8,353.26 1172.1,342 1163.4,339.9 1162.7,335.58 \ 1154.1,333 1145,330.24 1135.3,327.93 1125.6,326"]; kit_target_interval_file -> hsmetrics_normal [_draw_="c 7 -#000000 B 16 2136.55 358.53 2147.79 355.69 2160.48 352.59 2172.12 350 2190.24 345.97 2201.32 356.33 2213.12 342 2215.66 338.91 \ 2215.93 335.85 2213.12 333 2207.12 326.92 1606.66 325.23 1598.12 325 1584 324.62 1569.39 324.17 1554.7 323.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1555.13 321.24 1548.05 323.45 1554.96 326.14 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2260.12 335.6 0 90 24 -kit_target_interval_file ", label=kit_target_interval_file, lp="2260.1,337.5", pos="e,1546.5,323.4 2136.6,358.53 2147.8,355.69 2160.5,352.59 2172.1,350 2190.2,345.97 2201.3,356.33 2213.1,342 2215.7,338.91 2215.9,\ 335.85 2213.1,333 2207.1,326.92 1606.7,325.23 1598.1,325 1584,324.62 1569.4,324.17 1554.7,323.68"]; vep_reference_genome_version -> vep [_draw_="c 7 -#000000 B 16 2285.28 358.52 2301.08 352.26 2316.09 343.11 2306.12 333 2295.14 321.86 1758.66 326.75 1743.12 325 1700.68 320.23 \ 1691.55 309.96 1649.12 305 1408.25 276.87 800.54 286.54 558.12 280 520.98 279 481.17 277.83 443.31 276.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 443.85 274.23 436.78 276.47 443.7 279.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1799.12 313.1 0 112 24 -reference_genome_version ", label=reference_genome_version, lp="1799.1,315", pos="e,435.27,276.42 2285.3,358.52 2301.1,352.26 2316.1,343.11 2306.1,333 2295.1,321.86 1758.7,326.75 1743.1,325 1700.7,320.23 1691.5,\ 309.96 1649.1,305 1408.3,276.87 800.54,286.54 558.12,280 520.98,279 481.17,277.83 443.31,276.67"]; sample_sex -> cnvkit [_draw_="c 7 -#000000 B 13 1622.84 358.5 1630.11 355.22 1638.84 351.83 1647.12 350 1657.65 347.68 1833.65 349.78 1841.12 342 1855.74 326.76 \ 1875.52 337.31 1721.12 325 1699.19 323.25 1674.5 320.96 1655.52 319.12 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1655.94 316.7 1648.74 318.46 1655.47 321.58 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1875.12 335.6 0 48 10 -sample_sex ", label=sample_sex, lp="1875.1,337.5", pos="e,1647.2,318.31 1622.8,358.5 1630.1,355.22 1638.8,351.83 1647.1,350 1657.7,347.68 1833.7,349.78 1841.1,342 1855.7,326.76 1875.5,\ 337.31 1721.1,325 1699.2,323.25 1674.5,320.96 1655.5,319.12"]; ethseq_snps_vcf_file -> ethseq [_draw_="c 7 -#000000 B 7 3012.93 358.54 3005.66 344.82 2989.33 317.97 2967.12 305 2915.73 274.98 2735.64 271.15 2660.96 270.88 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2661.33 268.43 2654.32 270.87 2661.32 273.33 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3015.12 313.1 0 52 14 -snps_list_file ", label=snps_list_file, lp="3015.1,315", pos="e,2652.8,270.86 3012.9,358.54 3005.7,344.82 2989.3,317.97 2967.1,305 2915.7,274.98 2735.6,271.15 2661,270.88"]; merge_output [_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1242.62 80.5 1242.62 99.5 1327.62 99.5 1327.62 80.5 ", _ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1285.12 87.5 0 69 12 -merge_output ", height=0.27778, label=merge_output, pos="1285.1,90", rects="1242.6,80.5,1327.6,99.5", width=1.1806]; merge_output -> output_map [_draw_="c 7 -#000000 B 4 1285.12 80.71 1285.12 75.59 1285.12 68.85 1285.12 62.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1287.57 62.78 1285.12 55.78 1282.67 62.78 ", pos="e,1285.1,54.265 1285.1,80.709 1285.1,75.593 1285.1,68.848 1285.1,62.666"]; merge_output -> output [_draw_="c 7 -#000000 B 4 1298.16 80.5 1307.56 74.38 1320.42 66 1331.12 59.03 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1332.31 61.18 1336.84 55.3 1329.64 57.07 ", pos="e,1338.1,54.478 1298.2,80.505 1307.6,74.38 1320.4,65.999 1331.1,59.031"]; tpes -> merge_output [_draw_="c 7 -#000000 B 7 1185.18 125.51 1177.25 120.62 1170.79 114.23 1176.12 108 1183.87 98.95 1209.84 94.68 1234.48 92.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.45 95.14 1241.25 92.2 1234.1 90.25 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1200.62 110.6 0 49 11 -tpes_output ", label=tpes_output, lp="1200.6,112.5", pos="e,1242.8,92.089 1185.2,125.51 1177.2,120.62 1170.8,114.23 1176.1,108 1183.9,98.948 1209.8,94.679 1234.5,92.683"]; tpes -> merge_output [_draw_="c 7 -#000000 B 7 1184.24 134.69 1149.2 135.39 1079.69 133.73 1103.12 108 1111.88 98.39 1184 94.12 1234.78 92.29 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.62 94.74 1241.53 92.05 1234.45 89.85 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1138.62 110.6 0 71 15 -tpes_output_map ", label=tpes_output_map, lp="1138.6,112.5", pos="e,1243,92.003 1184.2,134.69 1149.2,135.39 1079.7,133.73 1103.1,108 1111.9,98.389 1184,94.116 1234.8,92.286"]; tpes -> merge_log_files [_draw_="c 7 -#000000 B 10 1221.65 133.17 1293.27 129.95 1548.2 118.41 1552.12 117 1558.39 114.74 1558.38 111.38 1564.12 108 1567.13 106.23 \ 1570.36 104.52 1573.62 102.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1574.52 105.19 1579.82 100 1572.44 100.76 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1581.12 110.6 0 34 9 -log_files ", label=log_files, lp="1581.1,112.5", pos="e,1581.2,99.362 1221.7,133.17 1293.3,129.95 1548.2,118.41 1552.1,117 1558.4,114.74 1558.4,111.38 1564.1,108 1567.1,106.23 1570.4,\ 104.52 1573.6,102.91"]; merge_log_files -> log_files [_draw_="c 7 -#000000 B 4 1563.79 80.5 1529.28 72.86 1478.9 61.69 1444.88 54.15 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1445.45 51.76 1438.09 52.64 1444.39 56.55 ", pos="e,1436.6,52.314 1563.8,80.505 1529.3,72.856 1478.9,61.689 1444.9,54.149"]; hsmetrics_tumor -> merge_output [_draw_="c 7 -#000000 B 10 1031.12 305.54 1043.13 298.23 1057.12 286.41 1057.12 271 1057.12 271 1057.12 271 1057.12 134 1057.12 98.17 1167.22 \ 91.37 1234.4 90.56 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.28 93.01 1241.26 90.5 1234.24 88.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1106.62 200.6 0 99 22 -hsmetrics_tumor_output ", label=hsmetrics_tumor_output, lp="1106.6,202.5", pos="e,1242.8,90.487 1031.1,305.54 1043.1,298.23 1057.1,286.41 1057.1,271 1057.1,271 1057.1,271 1057.1,134 1057.1,98.172 1167.2,91.373 \ 1234.4,90.56"]; hsmetrics_tumor -> merge_output [_draw_="c 7 -#000000 B 19 996.97 305.73 968.11 290.72 910.78 255.97 888.12 207 886.44 203.37 885.7 201.18 888.12 198 896.22 187.36 907.24 \ 199.01 917.12 190 930.12 178.16 918.4 165.14 931.12 153 977.79 108.46 1005.86 120.62 1069.12 108 1125.09 96.84 1190.59 92.93 1234.66 \ 91.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.46 94.06 1241.39 91.42 1234.33 89.17 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 948.62 200.6 0 121 26 -hsmetrics_tumor_output_map ", label=hsmetrics_tumor_output_map, lp="948.62,202.5", pos="e,1242.9,91.381 996.97,305.73 968.11,290.72 910.78,255.97 888.12,207 886.44,203.37 885.7,201.18 888.12,198 896.22,187.36 907.24,\ 199.01 917.12,190 930.12,178.16 918.4,165.14 931.12,153 977.79,108.46 1005.9,120.62 1069.1,108 1125.1,96.836 1190.6,92.934 1234.7,\ 91.607"]; hsmetrics_tumor -> merge_log_files [_draw_="c 7 -#000000 B 16 1035 305.61 1040.41 303.12 1046.11 300.19 1051.12 297 1103.24 263.79 1123.18 258.65 1157.12 207 1178.04 175.16 \ 1151.77 148.04 1182.12 125 1197.04 113.68 1500.64 120.05 1519.12 117 1529.03 115.36 1551.04 108.41 1569.91 102.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1570.48 104.5 1576.33 99.94 1568.91 99.86 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1179.12 200.6 0 34 9 -log_files ", label=log_files, lp="1179.1,202.5", pos="e,1577.8,99.461 1035,305.61 1040.4,303.12 1046.1,300.19 1051.1,297 1103.2,263.79 1123.2,258.65 1157.1,207 1178,175.16 1151.8,148.04 \ 1182.1,125 1197,113.68 1500.6,120.05 1519.1,117 1529,115.36 1551,108.41 1569.9,102.11"]; merge_vep_snvs_coverage -> merge_output [_draw_="c 7 -#000000 B 10 726.9 215.7 723.61 201.51 719.15 172.23 732.12 153 759.14 112.93 784.08 119.11 831.12 108 906.34 90.23 1132.49 \ 89.7 1234.38 90.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.14 92.88 1241.15 90.49 1234.17 87.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 781.62 155.6 0 99 21 -merge_vep_snvs_output ", label=merge_vep_snvs_output, lp="781.62,157.5", pos="e,1242.7,90.499 726.9,215.7 723.61,201.51 719.15,172.23 732.12,153 759.14,112.93 784.08,119.11 831.12,108 906.34,90.226 1132.5,89.703 \ 1234.4,90.435"]; merge_vep_snvs_coverage -> merge_log_files [_draw_="c 7 -#000000 B 13 737.34 215.62 749.63 203.6 774.06 181.63 799.12 170 804.51 167.5 1002.23 125.74 1008.12 125 1102.56 113.16 1127.08 \ 122.03 1222.12 117 1337.84 110.88 1473.2 100.95 1547.08 95.3 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1547.05 97.76 1553.84 94.78 1546.67 92.88 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 891.12 155.6 0 34 9 -log_files ", label=log_files, lp="891.12,157.5", pos="e,1555.3,94.668 737.34,215.62 749.63,203.6 774.06,181.63 799.12,170 804.51,167.5 1002.2,125.74 1008.1,125 1102.6,113.16 1127.1,122.03 \ 1222.1,117 1337.8,110.88 1473.2,100.95 1547.1,95.302"]; merge_vep_snvs_coverage -> clonet [_draw_="c 7 -#000000 B 10 854 222.1 1060.96 218.81 1453.85 211.94 1468.12 207 1474.42 204.82 1473.86 200.28 1480.12 198 1487.9 195.17 1498.24 \ 192.77 1510.41 190.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1510.63 193.19 1517.17 189.69 1509.88 188.35 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1500.12 200.6 0 40 9 -snv_table ", label=snv_table, lp="1500.1,202.5", pos="e,1518.7,189.46 854,222.1 1061,218.81 1453.9,211.94 1468.1,207 1474.4,204.82 1473.9,200.28 1480.1,198 1487.9,195.17 1498.2,192.77 \ 1510.4,190.74"]; cnvkit -> merge_output [_draw_="c 7 -#000000 B 19 1622.29 305.76 1616.73 281.55 1599.33 211.49 1581.12 198 1557.15 180.24 1473.17 204.54 1447.12 190 1429.57 180.21 \ 1435.76 166.77 1421.12 153 1416.18 148.35 1413.66 148.91 1408.12 145 1386.68 129.87 1385.78 119.35 1362.12 108 1353.9 104.06 1344.74 \ 101.01 1335.7 98.67 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.3 96.29 1328.92 97.06 1335.16 101.06 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1627.62 200.6 0 77 17 -cnvkit_output_map ", label=cnvkit_output_map, lp="1627.6,202.5", pos="e,1327.4,96.708 1622.3,305.76 1616.7,281.55 1599.3,211.49 1581.1,198 1557.2,180.24 1473.2,204.54 1447.1,190 1429.6,180.21 1435.8,\ 166.77 1421.1,153 1416.2,148.35 1413.7,148.91 1408.1,145 1386.7,129.87 1385.8,119.35 1362.1,108 1353.9,104.06 1344.7,101.01 1335.7,\ 98.67"]; cnvkit -> merge_output [_draw_="c 7 -#000000 B 16 1616.36 305.73 1599.6 287.83 1558.78 244.12 1525.12 207 1521.53 203.04 1521.9 200.42 1517.12 198 1482.87 180.67 \ 1468.34 199.39 1431.12 190 1400.22 182.21 1392.06 179.02 1365.12 162 1339.3 145.68 1313.63 121.02 1298.58 105.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1300.46 103.89 1293.85 100.52 1296.91 107.27 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1552.62 200.6 0 55 13 -cnvkit_output ", label=cnvkit_output, lp="1552.6,202.5", pos="e,1292.8,99.42 1616.4,305.73 1599.6,287.83 1558.8,244.12 1525.1,207 1521.5,203.04 1521.9,200.42 1517.1,198 1482.9,180.67 1468.3,\ 199.39 1431.1,190 1400.2,182.21 1392.1,179.02 1365.1,162 1339.3,145.68 1313.6,121.02 1298.6,105.47"]; cnvkit -> tpes [_draw_="c 7 -#000000 B 13 1600.76 312.1 1579.58 309.92 1547.71 305.49 1521.12 297 1434.4 269.29 1416.43 251.69 1337.12 207 1330.68 203.37 \ 1329.52 201.7 1323.12 198 1290.88 179.36 1252.46 159.99 1227.93 147.96 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1229.21 145.86 1221.84 144.99 1227.06 150.26 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1399.12 223.1 0 28 7 -segfile ", label=segfile, lp="1399.1,225", pos="e,1220.5,144.33 1600.8,312.1 1579.6,309.92 1547.7,305.49 1521.1,297 1434.4,269.29 1416.4,251.69 1337.1,207 1330.7,203.37 1329.5,\ 201.7 1323.1,198 1290.9,179.36 1252.5,159.99 1227.9,147.96"]; cnvkit -> merge_log_files [_draw_="c 7 -#000000 B 19 1638.69 305.55 1671.44 285.57 1745.36 234.37 1710.12 198 1690.47 177.72 1475.77 210.28 1456.12 190 1449.94 183.62 \ 1450.52 176.91 1456.12 170 1489.87 128.35 1526.18 168.98 1574.12 145 1591.02 136.55 1598.31 134.21 1606.12 117 1607.48 114 1607.76 \ 110.62 1607.45 107.31 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1609.86 106.84 1605.95 100.53 1605.07 107.9 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1734.12 200.6 0 34 9 -log_files ", label=log_files, lp="1734.1,202.5", pos="e,1605.6,99.054 1638.7,305.55 1671.4,285.57 1745.4,234.37 1710.1,198 1690.5,177.72 1475.8,210.28 1456.1,190 1449.9,183.62 1450.5,\ 176.91 1456.1,170 1489.9,128.35 1526.2,168.98 1574.1,145 1591,136.55 1598.3,134.21 1606.1,117 1607.5,114 1607.8,110.62 1607.5,107.31"]; cnvkit -> clonet [_draw_="c 7 -#000000 B 7 1647.52 312.12 1672.53 309.73 1710.19 304.94 1722.12 297 1741.21 284.29 1773.3 225.37 1788.15 196.72 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1790.3 197.89 1791.32 190.54 1785.94 195.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1777.12 245.6 0 28 7 -segfile ", label=segfile, lp="1777.1,247.5", pos="e,1792,189.2 1647.5,312.12 1672.5,309.73 1710.2,304.94 1722.1,297 1741.2,284.29 1773.3,225.37 1788.1,196.72"]; spia -> merge_output [_draw_="c 7 -#000000 B 16 2233.47 260.54 2236 241.22 2239.11 193.71 2213.12 170 2137.4 100.93 1856.38 131.86 1754.12 125 1705.09 121.71 \ 1581.37 126.32 1533.12 117 1521.53 114.76 1519.67 110.47 1508.12 108 1449.86 95.53 1381.32 91.9 1335.76 91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.08 88.55 1329.04 90.88 1336 93.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2261.12 178.1 0 70 15 -spia_output_map ", label=spia_output_map, lp="2261.1,180", pos="e,1327.5,90.857 2233.5,260.54 2236,241.22 2239.1,193.71 2213.1,170 2137.4,100.93 1856.4,131.86 1754.1,125 1705.1,121.71 1581.4,126.32 \ 1533.1,117 1521.5,114.76 1519.7,110.47 1508.1,108 1449.9,95.532 1381.3,91.903 1335.8,90.996"]; spia -> merge_output [_draw_="c 7 -#000000 B 22 2231.03 260.96 2228.57 246.09 2221.15 214.3 2201.12 198 2187.74 187.1 2177.82 199.05 2163.12 190 2153.43 184.03 \ 2157.2 175.29 2147.12 170 2076.49 132.97 1868.58 151.77 1789.12 145 1781.39 144.34 1518.45 119.56 1511.12 117 1504.14 114.56 1504.13 \ 110.37 1497.12 108 1468.31 98.27 1388.83 94.02 1335.8 92.23 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.11 89.79 1329.04 92.01 1335.96 94.69 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2187.62 178.1 0 49 11 -spia_output ", label=spia_output, lp="2187.6,180", pos="e,1327.5,91.966 2231,260.96 2228.6,246.09 2221.1,214.3 2201.1,198 2187.7,187.1 2177.8,199.05 2163.1,190 2153.4,184.03 2157.2,175.29 \ 2147.1,170 2076.5,132.97 1868.6,151.77 1789.1,145 1781.4,144.34 1518.4,119.56 1511.1,117 1504.1,114.56 1504.1,110.37 1497.1,108 \ 1468.3,98.272 1388.8,94.025 1335.8,92.233"]; spia -> merge_log_files [_draw_="c 7 -#000000 B 16 2250.52 268.79 2287.26 267.27 2369.22 258.01 2405.12 207 2407.42 203.73 2407.79 200.98 2405.12 198 2394.54 186.16 \ 2346.71 199.68 2334.12 190 2318.61 178.08 2318.14 119.23 2302.12 108 2275.89 89.61 1818 89.98 1657.31 90.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.47 88.23 1650.49 90.71 1657.5 93.13 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2351.12 178.1 0 34 9 -log_files ", label=log_files, lp="2351.1,180", pos="e,1649,90.721 2250.5,268.79 2287.3,267.27 2369.2,258.01 2405.1,207 2407.4,203.73 2407.8,200.98 2405.1,198 2394.5,186.16 2346.7,199.68 \ 2334.1,190 2318.6,178.08 2318.1,119.23 2302.1,108 2275.9,89.606 1818,89.98 1657.3,90.683"]; snvs_coverage -> merge_output [_draw_="c 7 -#000000 B 10 598.91 260.59 590.66 248.58 577.12 225.51 577.12 203.5 577.12 203.5 577.12 203.5 577.12 134 577.12 101.05 1072.07 \ 93.14 1234.31 91.43 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.2 93.88 1241.18 91.36 1234.15 88.98 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 623.12 178.1 0 92 20 -snvs_coverage_output ", label=snvs_coverage_output, lp="623.12,180", pos="e,1242.7,91.346 598.91,260.59 590.66,248.58 577.12,225.51 577.12,203.5 577.12,203.5 577.12,203.5 577.12,134 577.12,101.05 1072.1,\ 93.14 1234.3,91.431"]; snvs_coverage -> merge_output [_draw_="c 7 -#000000 B 22 649.38 266.27 717.56 261.57 841.78 250.93 854.12 235 859.57 227.97 859.82 221.82 854.12 215 841.39 199.74 824.53 \ 220.69 810.12 207 798.13 195.61 796.63 183.55 806.12 170 812.09 161.48 818.71 166.43 828.12 162 871.02 141.82 874.67 121.5 920.12 \ 108 977.5 90.96 1148.63 89.8 1234.62 90.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.39 92.82 1241.41 90.43 1234.43 87.92 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 863.12 178.1 0 114 24 -snvs_coverage_output_map ", label=snvs_coverage_output_map, lp="863.12,180", pos="e,1242.9,90.437 649.38,266.27 717.56,261.57 841.78,250.93 854.12,235 859.57,227.97 859.82,221.82 854.12,215 841.39,199.74 824.53,\ 220.69 810.12,207 798.13,195.61 796.63,183.55 806.12,170 812.09,161.48 818.71,166.43 828.12,162 871.02,141.82 874.67,121.5 920.12,\ 108 977.5,90.961 1148.6,89.805 1234.6,90.375"]; snvs_coverage -> tpes [_draw_="c 7 -#000000 B 10 601.87 260.82 597.8 249.04 592.64 227.37 604.12 215 618.81 199.16 970.76 193.23 992.12 190 1059.49 179.82 1136.55 \ 157.22 1176.29 144.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1176.81 147.13 1182.74 142.68 1175.33 142.46 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 811.62 200.6 0 49 11 -snvs_pileup ", label=snvs_pileup, lp="811.62,202.5", pos="e,1184.2,142.22 601.87,260.82 597.8,249.04 592.64,227.37 604.12,215 618.81,199.16 970.76,193.23 992.12,190 1059.5,179.82 1136.6,\ 157.22 1176.3,144.73"]; snvs_coverage -> merge_log_files [_draw_="c 7 -#000000 B 22 649.22 269.66 693.34 269.36 762.85 266.27 821.12 252 839.88 247.4 847.12 248.31 861.12 235 874.38 222.4 864.6 \ 209.11 879.12 198 894.21 186.45 902.76 194.91 921.12 190 1006.12 167.26 1021.69 141.46 1108.12 125 1149.85 117.05 1256.73 119.71 \ 1299.12 117 1385.8 111.47 1486.21 102.31 1546.9 96.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1546.95 98.93 1553.69 95.81 1546.48 94.05 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 997.12 178.1 0 34 9 -log_files ", label=log_files, lp="997.12,180", pos="e,1555.2,95.668 649.22,269.66 693.34,269.36 762.85,266.27 821.12,252 839.88,247.4 847.12,248.31 861.12,235 874.38,222.4 864.6,209.11 \ 879.12,198 894.21,186.45 902.76,194.91 921.12,190 1006.1,167.26 1021.7,141.46 1108.1,125 1149.9,117.05 1256.7,119.71 1299.1,117 \ 1385.8,111.47 1486.2,102.31 1546.9,96.469"]; snvs_coverage -> merge_vep_snvs_coverage [_draw_="c 7 -#000000 B 7 649.2 263.3 662.35 260.75 676.59 257.12 689.12 252 697 248.78 705.01 243.95 711.76 239.33 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 713.04 241.42 717.31 235.36 710.19 237.44 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 746.62 245.6 0 81 18 -snvs_pileup_normal ", label=snvs_pileup_normal, lp="746.62,247.5", pos="e,718.54,234.47 649.2,263.3 662.35,260.75 676.59,257.12 689.12,252 697,248.78 705.01,243.95 711.76,239.33"]; snvs_coverage -> merge_vep_snvs_coverage [_draw_="c 7 -#000000 B 7 605.08 260.99 605.5 255.14 607.09 247.47 612.12 243 614.78 240.64 618.85 238.61 623.91 236.86 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 624.51 239.24 630.53 234.92 623.13 234.54 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 650.12 245.6 0 76 17 -snvs_pileup_tumor ", label=snvs_pileup_tumor, lp="650.12,247.5", pos="e,631.99,234.5 605.08,260.99 605.5,255.14 607.09,247.47 612.12,243 614.78,240.64 618.85,238.61 623.91,236.86"]; vep -> merge_output [_draw_="c 7 -#000000 B 13 323.35 260.58 341.03 254.49 356.12 244.02 356.12 226 356.12 226 356.12 226 356.12 134 356.12 95.34 400.97 114.23 \ 439.12 108 517.27 95.24 1063.89 91.92 1234.43 91.18 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.23 93.63 1241.22 91.15 1234.21 88.73 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 390.12 178.1 0 68 14 -vep_output_map ", label=vep_output_map, lp="390.12,180", pos="e,1242.7,91.148 323.35,260.58 341.03,254.49 356.12,244.02 356.12,226 356.12,226 356.12,226 356.12,134 356.12,95.344 400.97,114.23 \ 439.12,108 517.27,95.241 1063.9,91.915 1234.4,91.183"]; vep -> merge_output [_draw_="c 7 -#000000 B 13 271.6 260.6 274.82 252.04 279.12 238.33 279.12 226 279.12 226 279.12 226 279.12 134 279.12 95.77 323.39 114.19 \ 361.12 108 447.18 93.87 1053.57 91.48 1234.36 91.08 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.14 93.53 1241.13 91.06 1234.13 88.63 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 302.12 178.1 0 46 10 -vep_output ", label=vep_output, lp="302.12,180", pos="e,1242.6,91.062 271.6,260.6 274.82,252.04 279.12,238.33 279.12,226 279.12,226 279.12,226 279.12,134 279.12,95.767 323.39,114.19 \ 361.12,108 447.18,93.872 1053.6,91.479 1234.4,91.079"]; vep -> merge_log_files [_draw_="c 7 -#000000 B 22 320.54 260.53 422.39 243.8 639.73 206.7 670.12 190 680.87 184.09 679.11 177.08 689.12 170 704.22 159.31 709.37 \ 158.21 727.12 153 806.91 129.58 829.29 132.35 912.12 125 945.22 122.06 1179.36 126.79 1211.12 117 1218.19 114.82 1218.07 110.24 \ 1225.12 108 1240.15 103.22 1445.93 96.01 1546.95 92.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1546.78 95.19 1553.7 92.51 1546.63 90.29 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 706.12 178.1 0 34 9 -log_files ", label=log_files, lp="706.12,180", pos="e,1555.2,92.465 320.54,260.53 422.39,243.8 639.73,206.7 670.12,190 680.87,184.09 679.11,177.08 689.12,170 704.22,159.31 709.37,158.21 \ 727.12,153 806.91,129.58 829.29,132.35 912.12,125 945.22,122.06 1179.4,126.79 1211.1,117 1218.2,114.82 1218.1,110.24 1225.1,108 \ 1240.1,103.22 1445.9,96.009 1546.9,92.732"]; vep -> merge_vep_snvs_coverage [_draw_="c 7 -#000000 B 10 397.68 260.5 420.87 258.25 444.76 255.45 467.12 252 485.13 249.22 489.1 245.7 507.12 243 517.24 241.48 557 238.31 \ 600.13 235.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 600.19 237.56 606.99 234.61 599.83 232.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 556.62 245.6 0 99 22 -vep_annotated_variants ", label=vep_annotated_variants, lp="556.62,247.5", pos="e,608.5,234.49 397.68,260.5 420.87,258.25 444.76,255.45 467.12,252 485.13,249.22 489.1,245.7 507.12,243 517.24,241.48 557,238.31 \ 600.13,235.11"]; ethseq -> merge_output [_draw_="c 7 -#000000 B 22 2624.19 260.64 2621.1 254.92 2616.3 247.57 2610.12 243 2547.87 196.93 2503.93 239.21 2444.12 190 2436.29 183.55 \ 2441.2 176.14 2433.12 170 2364.05 117.46 2328.38 141.15 2243.12 125 2190.63 115.06 2177.38 112.16 2124.12 108 1997.6 98.12 1679.99 \ 103.02 1553.12 100 1477.36 98.2 1389.58 95.05 1335.7 92.99 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1335.95 90.55 1328.87 92.73 1335.77 95.45 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2485.12 178.1 0 82 17 -ethseq_output_map ", label=ethseq_output_map, lp="2485.1,180", pos="e,1327.4,92.674 2624.2,260.64 2621.1,254.92 2616.3,247.57 2610.1,243 2547.9,196.93 2503.9,239.21 2444.1,190 2436.3,183.55 2441.2,\ 176.14 2433.1,170 2364,117.46 2328.4,141.15 2243.1,125 2190.6,115.06 2177.4,112.16 2124.1,108 1997.6,98.118 1680,103.02 1553.1,100 \ 1477.4,98.197 1389.6,95.048 1335.7,92.994"]; ethseq -> merge_output [_draw_="c 7 -#000000 B 25 2621.47 260.63 2616.13 254.58 2608.07 246.83 2599.12 243 2557.32 225.1 2541.39 245.38 2497.12 235 2454.21 224.94 \ 2447.09 211.45 2405.12 198 2390.75 193.39 2383.31 200.13 2372.12 190 2365.14 183.68 2372.14 176.28 2365.12 170 2324.85 133.96 2298.65 \ 157.7 2246.12 145 2216.74 137.9 2210.92 130.06 2181.12 125 2160.16 121.44 1522.16 99.19 1335.77 92.74 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.1 90.3 1329.02 92.51 1335.93 95.2 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2402.12 178.1 0 60 13 -ethseq_output ", label=ethseq_output, lp="2402.1,180", pos="e,1327.5,92.459 2621.5,260.63 2616.1,254.58 2608.1,246.83 2599.1,243 2557.3,225.1 2541.4,245.38 2497.1,235 2454.2,224.94 2447.1,\ 211.45 2405.1,198 2390.7,193.39 2383.3,200.13 2372.1,190 2365.1,183.68 2372.1,176.28 2365.1,170 2324.8,133.96 2298.7,157.7 2246.1,\ 145 2216.7,137.9 2210.9,130.06 2181.1,125 2160.2,121.44 1522.2,99.185 1335.8,92.744"]; ethseq -> merge_log_files [_draw_="c 7 -#000000 B 13 2628.12 260.76 2628.12 252.1 2628.12 238.09 2628.12 226 2628.12 226 2628.12 226 2628.12 134 2628.12 90.65 2577.02 \ 114.22 2534.12 108 2447.71 95.47 1844.66 91.98 1657.44 91.2 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.62 88.75 1650.61 91.17 1657.6 93.65 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2645.12 178.1 0 34 9 -log_files ", label=log_files, lp="2645.1,180", pos="e,1649.1,91.164 2628.1,260.76 2628.1,252.1 2628.1,238.09 2628.1,226 2628.1,226 2628.1,226 2628.1,134 2628.1,90.654 2577,114.22 2534.1,\ 108 2447.7,95.467 1844.7,91.984 1657.4,91.199"]; clonet -> merge_output [_draw_="c 7 -#000000 B 13 1650.81 170.53 1588.03 165.26 1522.51 157.12 1494.12 145 1481.35 139.55 1482.31 131.66 1470.12 125 1448.04 112.94 \ 1440.69 113.42 1416.12 108 1389.88 102.21 1360.21 98.16 1335.75 95.47 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.06 93.04 1328.84 94.73 1335.54 97.91 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1533.62 133.1 0 79 17 -clonet_output_map ", label=clonet_output_map, lp="1533.6,135", pos="e,1327.3,94.574 1650.8,170.53 1588,165.26 1522.5,157.12 1494.1,145 1481.4,139.55 1482.3,131.66 1470.1,125 1448,112.94 1440.7,113.42 \ 1416.1,108 1389.9,102.21 1360.2,98.162 1335.8,95.47"]; clonet -> merge_output [_draw_="c 7 -#000000 B 13 1618.12 170.52 1585.47 168.26 1551.74 165.45 1520.12 162 1508.04 160.68 1420.84 153.46 1412.12 145 1400.11 133.35 \ 1417.23 119.56 1405.12 108 1395.11 98.44 1363.72 94.22 1335.55 92.37 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1335.97 89.94 1328.84 91.98 1335.68 94.83 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1440.62 133.1 0 57 13 -clonet_output ", label=clonet_output, lp="1440.6,135", pos="e,1327.3,91.891 1618.1,170.52 1585.5,168.26 1551.7,165.45 1520.1,162 1508,160.68 1420.8,153.46 1412.1,145 1400.1,133.35 1417.2,119.56 \ 1405.1,108 1395.1,98.445 1363.7,94.221 1335.5,92.372"]; clonet -> tpes [_draw_="c 7 -#000000 B 7 1518.86 170.51 1477.67 168.29 1435.76 165.5 1396.12 162 1336.73 156.75 1267.57 146.39 1230.29 140.46 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1230.75 138.05 1223.45 139.36 1229.98 142.89 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1421.12 155.6 0 50 12 -ploidy_table ", label=ploidy_table, lp="1421.1,157.5", pos="e,1222,139.12 1518.9,170.51 1477.7,168.29 1435.8,165.5 1396.1,162 1336.7,156.75 1267.6,146.39 1230.3,140.46"]; clonet -> merge_log_files [_draw_="c 7 -#000000 B 4 1777.52 170.56 1742.83 154.83 1668.18 120.96 1628.37 102.91 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1629.43 100.7 1622.04 100.04 1627.41 105.16 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1736.12 133.1 0 34 9 -log_files ", label=log_files, lp="1736.1,135", pos="e,1620.7,99.412 1777.5,170.56 1742.8,154.83 1668.2,120.96 1628.4,102.91"]; pileup_normal -> merge_output [_draw_="c 7 -#000000 B 22 2054.09 305.74 2073.71 278.54 2135.04 193.38 2136.12 190 2138.82 181.53 2142.26 176.43 2136.12 170 2125.52 158.9 \ 1597.57 152.39 1584.12 145 1574.61 139.77 1579.44 130.55 1570.12 125 1556.67 116.99 1515.65 119.03 1500.12 117 1472.95 113.44 1466.3 \ 111.5 1439.12 108 1404.62 103.55 1365.67 99.26 1335.57 96.1 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1336.05 93.69 1328.83 95.4 1335.54 98.56 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2174.62 200.6 0 89 20 -pileup_normal_output ", label=pileup_normal_output, lp="2174.6,202.5", pos="e,1327.3,95.24 2054.1,305.74 2073.7,278.54 2135,193.38 2136.1,190 2138.8,181.53 2142.3,176.43 2136.1,170 2125.5,158.9 1597.6,152.39 \ 1584.1,145 1574.6,139.77 1579.4,130.55 1570.1,125 1556.7,116.99 1515.6,119.03 1500.1,117 1472.9,113.44 1466.3,111.5 1439.1,108 1404.6,\ 103.55 1365.7,99.259 1335.6,96.1"]; pileup_normal -> merge_log_files [_draw_="c 7 -#000000 B 16 2057.52 305.86 2070.94 294.51 2096.68 273.79 2121.12 260 2130.02 254.98 2285.44 198.49 2291.12 190 2296.07 182.61 \ 2295.91 177.49 2291.12 170 2255.78 114.71 2220.98 123.09 2157.12 108 2109.5 96.75 1788.29 92.65 1657.43 91.44 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.63 88.99 1650.61 91.38 1657.58 93.89 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2293.12 200.6 0 34 9 -log_files ", label=log_files, lp="2293.1,202.5", pos="e,1649.1,91.361 2057.5,305.86 2070.9,294.51 2096.7,273.79 2121.1,260 2130,254.98 2285.4,198.49 2291.1,190 2296.1,182.61 2295.9,177.49 \ 2291.1,170 2255.8,114.71 2221,123.09 2157.1,108 2109.5,96.75 1788.3,92.651 1657.4,91.437"]; pileup_normal -> spia [_draw_="c 7 -#000000 B 7 2080.4 305.57 2102.02 300.11 2131.16 293.09 2157.12 288 2177.56 284 2184.93 285.6 2205.45 280.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2206.02 283.12 2212.19 279 2204.8 278.37 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2198.12 290.6 0 82 18 -snps_pileup_normal ", label=snps_pileup_normal, lp="2198.1,292.5", pos="e,2213.7,278.63 2080.4,305.57 2102,300.11 2131.2,293.09 2157.1,288 2177.6,284 2184.9,285.6 2205.5,280.73"]; pileup_normal -> ethseq [_draw_="c 7 -#000000 B 10 2186.62 305.52 2189.48 305.35 2192.31 305.17 2195.12 305 2253.34 301.44 2267.95 301.28 2326.12 297 2424.01 289.8 \ 2539.58 279.29 2595.09 274.11 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2595.23 276.56 2601.97 273.47 2594.77 271.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2458.62 290.6 0 49 11 -snps_pileup ", label=snps_pileup, lp="2458.6,292.5", pos="e,2603.5,273.33 2186.6,305.52 2189.5,305.35 2192.3,305.17 2195.1,305 2253.3,301.44 2267.9,301.28 2326.1,297 2424,289.8 2539.6,279.29 \ 2595.1,274.11"]; pileup_normal -> clonet [_draw_="c 7 -#000000 B 7 1976.69 305.56 1935.13 297.57 1883.87 282.05 1847.12 252 1828.11 236.46 1812.76 212.2 1804.03 196.45 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1806.27 195.44 1800.8 190.42 1801.95 197.75 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1888.12 245.6 0 82 18 -snps_pileup_normal ", label=snps_pileup_normal, lp="1888.1,247.5", pos="e,1800.1,189.08 1976.7,305.56 1935.1,297.57 1883.9,282.05 1847.1,252 1828.1,236.46 1812.8,212.2 1804,196.45"]; mutect2 -> merge_output [_draw_="c 7 -#000000 B 19 347.75 305.94 346.19 305.6 344.64 305.28 343.12 305 289.54 295.02 146.8 306.41 99.12 280 94.69 277.54 92.12 276.07 \ 92.12 271 92.12 271 92.12 271 92.12 134 92.12 90.94 241.19 111.26 284.12 108 471.8 93.75 1058.37 91.44 1234.57 91.07 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.39 93.52 1241.38 91.06 1234.38 88.62 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 124.62 200.6 0 65 14 -mutect2_output ", label=mutect2_output, lp="124.62,202.5", pos="e,1242.9,91.055 347.75,305.94 346.19,305.6 344.64,305.28 343.12,305 289.54,295.02 146.8,306.41 99.121,280 94.688,277.54 92.121,276.07 \ 92.121,271 92.121,271 92.121,271 92.121,134 92.121,90.944 241.19,111.26 284.12,108 471.8,93.749 1058.4,91.443 1234.6,91.071"]; mutect2 -> merge_output [_draw_="c 7 -#000000 B 16 373.12 305.75 371.64 300.08 370.95 292.75 375.12 288 393.15 267.45 415.95 298.46 436.12 280 446.7 270.32 443.12 \ 262.84 443.12 248.5 443.12 248.5 443.12 248.5 443.12 134 443.12 94.15 1052.55 90.98 1234.45 90.92 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1234.28 93.37 1241.28 90.92 1234.28 88.47 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 486.62 200.6 0 87 18 -mutect2_output_map ", label=mutect2_output_map, lp="486.62,202.5", pos="e,1242.8,90.924 373.12,305.75 371.64,300.08 370.95,292.75 375.12,288 393.15,267.45 415.95,298.46 436.12,280 446.7,270.32 443.12,\ 262.84 443.12,248.5 443.12,248.5 443.12,248.5 443.12,134 443.12,94.152 1052.5,90.983 1234.5,90.925"]; mutect2 -> merge_log_files [_draw_="c 7 -#000000 B 22 404.33 305.78 405.6 305.5 406.87 305.24 408.12 305 514.77 284.67 543.4 293.51 651.12 280 810.95 259.95 861.39 \ 277.71 1006.12 207 1012.11 204.07 1012.44 201.48 1018.12 198 1081.01 159.48 1095.64 143.12 1167.12 125 1209.16 114.34 1318.87 120.23 \ 1362.12 117 1425.73 112.26 1498.53 103.96 1547.12 98.02 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1547.15 100.48 1553.8 97.2 1546.55 95.62 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1035.12 200.6 0 34 9 -log_files ", label=log_files, lp="1035.1,202.5", pos="e,1555.3,97.01 404.33,305.78 405.6,305.5 406.87,305.24 408.12,305 514.77,284.67 543.4,293.51 651.12,280 810.95,259.95 861.39,277.71 \ 1006.1,207 1012.1,204.07 1012.4,201.48 1018.1,198 1081,159.48 1095.6,143.12 1167.1,125 1209.2,114.34 1318.9,120.23 1362.1,117 1425.7,\ 112.26 1498.5,103.96 1547.1,98.017"]; mutect2 -> snvs_coverage [_draw_="c 7 -#000000 B 7 374.98 305.99 374.63 300.14 375.29 292.47 380.12 288 383.26 285.09 486.99 278.23 552.49 274.17 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.33 276.64 559.16 273.76 552.03 271.74 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 404.62 290.6 0 49 12 -variants_vcf ", label=variants_vcf, lp="404.62,292.5", pos="e,560.67,273.67 374.98,305.99 374.63,300.14 375.29,292.47 380.12,288 383.26,285.09 486.99,278.23 552.49,274.17"]; mutect2 -> vep [_draw_="c 7 -#000000 B 10 347.69 306.2 346.15 305.79 344.61 305.39 343.12 305 328.94 301.29 324.66 302.63 311.12 297 302.66 293.48 293.91 \ 288.47 286.53 283.79 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 288.12 281.91 280.93 280.12 285.43 286.01 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 330.12 290.6 0 38 10 -input_file ", label=input_file, lp="330.12,292.5", pos="e,279.66,279.29 347.69,306.2 346.15,305.79 344.61,305.39 343.12,305 328.94,301.29 324.66,302.63 311.12,297 302.66,293.48 293.91,\ 288.47 286.53,283.79"]; pileup_tumor -> merge_output [_draw_="c 7 -#000000 B 22 2337.23 305.63 2334.46 282.54 2324.52 216.61 2297.12 170 2291.71 160.79 2289.81 157.5 2280.12 153 2260.7 143.99 \ 2205.45 146.85 2184.12 145 2085.87 136.46 2061.6 130.41 1963.12 125 1917.4 122.49 1596.2 125.03 1551.12 117 1539.08 114.85 1537.1 \ 110.45 1525.12 108 1460.65 94.8 1384.64 91.41 1335.71 90.75 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1335.73 88.3 1328.71 90.68 1335.68 93.2 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2355.62 200.6 0 85 19 -pileup_tumor_output ", label=pileup_tumor_output, lp="2355.6,202.5", pos="e,1327.2,90.661 2337.2,305.63 2334.5,282.54 2324.5,216.61 2297.1,170 2291.7,160.79 2289.8,157.5 2280.1,153 2260.7,143.99 2205.4,\ 146.85 2184.1,145 2085.9,136.46 2061.6,130.41 1963.1,125 1917.4,122.49 1596.2,125.03 1551.1,117 1539.1,114.85 1537.1,110.45 1525.1,\ 108 1460.7,94.799 1384.6,91.407 1335.7,90.751"]; pileup_tumor -> merge_log_files [_draw_="c 7 -#000000 B 13 2470.22 305.52 2501.23 300.5 2527.96 292.57 2537.12 280 2543.53 271.21 2530.12 229.77 2530.12 226 2530.12 226 \ 2530.12 226 2530.12 134 2530.12 90.05 1857.21 89.77 1657.41 90.66 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1657.6 88.2 1650.61 90.69 1657.62 93.1 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2547.12 200.6 0 34 9 -log_files ", label=log_files, lp="2547.1,202.5", pos="e,1649.1,90.695 2470.2,305.52 2501.2,300.5 2528,292.57 2537.1,280 2543.5,271.21 2530.1,229.77 2530.1,226 2530.1,226 2530.1,226 2530.1,\ 134 2530.1,90.051 1857.2,89.771 1657.4,90.656"]; pileup_tumor -> spia [_draw_="c 7 -#000000 B 7 2264.76 305.64 2258.87 303.36 2253.23 300.52 2248.12 297 2244.34 294.4 2241.29 290.59 2238.91 286.68 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2241.2 285.78 2235.82 280.68 2236.85 288.03 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2286.62 290.6 0 77 17 -snps_pileup_tumor ", label=snps_pileup_tumor, lp="2286.6,292.5", pos="e,2235.1,279.34 2264.8,305.64 2258.9,303.36 2253.2,300.52 2248.1,297 2244.3,294.4 2241.3,290.59 2238.9,286.68"]; pileup_tumor -> clonet [_draw_="c 7 -#000000 B 10 2212.52 305.51 2168.07 302.29 2126.45 298.93 2116.12 297 2048.12 284.28 2032.26 275.29 1967.12 252 1914.86 233.31 \ 1855.31 207.54 1822.07 192.73 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1823.38 190.63 1815.99 190.01 1821.38 195.11 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2005.62 245.6 0 77 17 -snps_pileup_tumor ", label=snps_pileup_tumor, lp="2005.6,247.5", pos="e,1814.6,189.39 2212.5,305.51 2168.1,302.29 2126.5,298.93 2116.1,297 2048.1,284.28 2032.3,275.29 1967.1,252 1914.9,233.31 1855.3,\ 207.54 1822.1,192.73"]; hsmetrics_normal -> merge_output [_draw_="c 7 -#000000 B 7 1353.58 305.58 1321.14 291.02 1259.2 257.73 1234.12 207 1216.29 170.92 1249.99 127.17 1270.67 105.14 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1272.19 107.09 1275.3 100.36 1268.67 103.68 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1285.62 200.6 0 103 23 -hsmetrics_normal_output ", label=hsmetrics_normal_output, lp="1285.6,202.5", pos="e,1276.4,99.273 1353.6,305.58 1321.1,291.02 1259.2,257.73 1234.1,207 1216.3,170.92 1250,127.17 1270.7,105.14"]; hsmetrics_normal -> merge_output [_draw_="c 7 -#000000 B 10 1375.15 305.61 1376.92 287.26 1378.64 242.92 1358.12 215 1353.41 208.59 1347.72 212.64 1342.12 207 1327.07 191.85 \ 1302.9 135.12 1291.48 107 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1293.82 106.25 1288.94 100.67 1289.28 108.08 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1404.62 200.6 0 125 27 -hsmetrics_normal_output_map ", label=hsmetrics_normal_output_map, lp="1404.6,202.5", pos="e,1288.4,99.271 1375.1,305.61 1376.9,287.26 1378.6,242.92 1358.1,215 1353.4,208.59 1347.7,212.64 1342.1,207 1327.1,191.85 1302.9,\ 135.12 1291.5,107"]; hsmetrics_normal -> merge_log_files [_draw_="c 7 -#000000 B 28 1413.18 305.53 1485.85 288.89 1637.17 249.82 1667.12 207 1669.41 203.72 1669.9 200.88 1667.12 198 1650.46 180.71 \ 1467.79 207.29 1451.12 190 1444.95 183.6 1448.43 178.47 1451.12 170 1453.92 161.19 1457.68 160.48 1463.12 153 1465.74 149.41 1466.51 \ 148.6 1469.12 145 1475.49 136.21 1473.68 130.35 1483.12 125 1504.83 112.7 1575.87 132.87 1595.12 117 1598 114.62 1599.77 111.2 1600.83 \ 107.61 ", _hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1603.22 108.17 1601.98 100.86 1598.39 107.34 ", _ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1686.12 200.6 0 34 9 -log_files ", label=log_files, lp="1686.1,202.5", pos="e,1602.2,99.363 1413.2,305.53 1485.8,288.89 1637.2,249.82 1667.1,207 1669.4,203.72 1669.9,200.88 1667.1,198 1650.5,180.71 1467.8,\ 207.29 1451.1,190 1445,183.6 1448.4,178.47 1451.1,170 1453.9,161.19 1457.7,160.48 1463.1,153 1465.7,149.41 1466.5,148.6 1469.1,145 \ 1475.5,136.21 1473.7,130.35 1483.1,125 1504.8,112.7 1575.9,132.87 1595.1,117 1598,114.62 1599.8,111.2 1600.8,107.61"]; }