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		pos="e,3045.7,152.47 3001.6,231.58 2992.6,227.79 2983.5,222.44 2977,215 2966.1,202.47 2961.6,190.95 2972,178 2980.9,166.86 3008.3,159.12 \
3037.5,153.88"];
	threads -> star_generate_indices	[_draw_="c 7 -#000000 B 10 2995.8 231.55 2980.25 228.28 2961.82 224.88 2945 223 2921.55 220.38 2119.44 200.65 2096 198 2013.06 188.64 1917.74 \
167.32 1864.51 154.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1865.19 152.09 1857.81 152.81 1864.03 156.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2112 186.1 0 32 7 -threads ",
		label=threads,
		lp="2112,188",
		pos="e,1856.3,152.46 2995.8,231.55 2980.3,228.28 2961.8,224.88 2945,223 2921.6,220.38 2119.4,200.65 2096,198 2013.1,188.64 1917.7,167.32 \
1864.5,154.45"];
	genome_sa_index_n_bases -> star_generate_indices	[_draw_="c 7 -#000000 B 4 1213.08 231.52 1337.28 213.7 1624.77 172.45 1755.78 153.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1756.1 156.08 1762.68 152.66 1755.4 151.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1631.5 186.1 0 111 23 -genome_sa_index_n_bases ",
		label=genome_sa_index_n_bases,
		lp="1631.5,188",
		pos="e,1764.2,152.44 1213.1,231.52 1337.3,213.7 1624.8,172.45 1755.8,153.65"];
	ribosomal_generate_indices	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3813 88.5 3813 107.5 3967 107.5 3967 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3890 95.5 0 138 26 -ribosomal_generate_indices ",
		height=0.27778,
		label=ribosomal_generate_indices,
		pos="3890,98",
		rects="3813,88.5,3967,107.5",
		width=2.1389];
	genome -> ribosomal_generate_indices	[_draw_="c 7 -#000000 B 7 3507.92 231.6 3559.06 210.26 3699.42 153.02 3820 116 3827.62 113.66 3835.79 111.43 3843.76 109.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3843.96 111.88 3850.16 107.81 3842.78 107.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3721.5 163.6 0 73 15 -index_base_name ",
		label=index_base_name,
		lp="3721.5,165.5",
		pos="e,3851.6,107.45 3507.9,231.6 3559.1,210.26 3699.4,153.02 3820,116 3827.6,113.66 3835.8,111.43 3843.8,109.4"];
	genome -> mitochondrial_generate_indices	[_draw_="c 7 -#000000 B 7 3474.38 231.6 3461.88 224.15 3442.68 213.34 3425 206 3357.57 177.99 3276.21 162.21 3215.09 153.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3215.75 151.21 3208.48 152.68 3215.08 156.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3427.5 186.1 0 49 10 -genome_dir ",
		label=genome_dir,
		lp="3427.5,188",
		pos="e,3207,152.47 3474.4,231.6 3461.9,224.15 3442.7,213.34 3425,206 3357.6,177.99 3276.2,162.21 3215.1,153.59"];
	genome -> star_generate_indices	[_draw_="c 7 -#000000 B 22 3470.01 231.67 3461.93 228.34 3452.17 224.85 3443 223 3245.95 183.18 3191.91 212.97 2991 206 2935.01 204.06 2793.8 \
209.66 2739 198 2715.99 193.11 2712.94 183.22 2690 178 2628.79 164.06 2470.72 163.65 2408 161 2260.53 154.78 2223.53 157.4 2076 \
153 2014.2 151.16 1943.93 148.62 1893.15 146.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1893.46 144.27 1886.37 146.46 1893.27 149.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2763.5 186.1 0 49 10 -genome_dir ",
		label=genome_dir,
		lp="2763.5,188",
		pos="e,1884.9,146.4 3470,231.67 3461.9,228.34 3452.2,224.85 3443,223 3246,183.18 3191.9,212.97 2991,206 2935,204.06 2793.8,209.66 2739,\
198 2716,193.11 2712.9,183.22 2690,178 2628.8,164.06 2470.7,163.65 2408,161 2260.5,154.78 2223.5,157.4 2076,153 2014.2,151.16 1943.9,\
148.62 1893.2,146.71"];
	bowtie_generate_indices	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2662 88.5 2662 107.5 2800 107.5 2800 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2731 95.5 0 122 23 -bowtie_generate_indices ",
		height=0.27778,
		label=bowtie_generate_indices,
		pos="2731,98",
		rects="2662,88.5,2800,107.5",
		width=1.9167];
	genome -> bowtie_generate_indices	[_draw_="c 7 -#000000 B 7 3485.77 231.63 3481.7 218.05 3471.7 191.38 3453 178 3351.15 105.12 2972.63 97.78 2808.14 98.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2808.5 95.69 2801.51 98.16 2808.52 100.59 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3475.5 163.6 0 73 15 -index_base_name ",
		label=index_base_name,
		lp="3475.5,165.5",
		pos="e,2800,98.169 3485.8,231.63 3481.7,218.05 3471.7,191.38 3453,178 3351.1,105.12 2972.6,97.776 2808.1,98.144"];
	effective_genome_size -> genome_size	[_draw_="c 7 -#000000 B 13 4006 231.7 4006 221.6 4006 204.05 4006 189 4006 189 4006 189 4006 97 4006 44.86 4422.47 70.95 4474 63 4483.96 \
61.46 4494.59 59.07 4504.36 56.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4504.72 58.99 4510.85 54.82 4503.46 54.26 ",
		pos="e,4512.3,54.433 4006,231.7 4006,221.6 4006,204.05 4006,189 4006,189 4006,189 4006,97 4006,44.863 4422.5,70.953 4474,63 4484,61.463 \
4494.6,59.068 4504.4,56.555"];
	fasta_ribosomal -> ribosomal_generate_indices	[_draw_="c 7 -#000000 B 13 3664.98 231.53 3681.18 228.49 3699.9 225.26 3717 223 3759.01 217.45 3771.88 228.64 3812 215 3847.02 203.1 3862.48 \
201.42 3882 170 3892.19 153.6 3892.94 130.88 3891.97 115.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3894.42 115.43 3891.35 108.68 3889.54 115.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3905 163.6 0 38 10 -fasta_file ",
		label=fasta_file,
		lp="3905,165.5",
		pos="e,3891.2,107.17 3665,231.53 3681.2,228.49 3699.9,225.26 3717,223 3759,217.45 3771.9,228.64 3812,215 3847,203.1 3862.5,201.42 3882,\
170 3892.2,153.6 3892.9,130.88 3892,115.6"];
	extract_fasta	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2129.5 178.5 2129.5 197.5 2210.5 197.5 2210.5 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2170 185.5 0 65 13 -extract_fasta ",
		height=0.27778,
		label=extract_fasta,
		pos="2170,188",
		rects="2129.5,178.5,2210.5,197.5",
		width=1.125];
	genome_file -> extract_fasta	[_draw_="c 7 -#000000 B 7 2194.45 231.52 2186.79 227.63 2178.99 222.23 2174 215 2172.13 212.28 2170.99 209.03 2170.33 205.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2172.78 205.64 2169.64 198.92 2167.91 206.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2202.5 208.6 0 57 14 -reference_file ",
		label=reference_file,
		lp="2202.5,210.5",
		pos="e,2169.5,197.41 2194.5,231.52 2186.8,227.63 2179,222.23 2174,215 2172.1,212.28 2171,209.03 2170.3,205.76"];
	extract_mitochondrial_fasta	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3006 178.5 3006 197.5 3160 197.5 3160 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3083 185.5 0 138 27 -extract_mitochondrial_fasta ",
		height=0.27778,
		label=extract_mitochondrial_fasta,
		pos="3083,188",
		rects="3006,178.5,3160,197.5",
		width=2.1389];
	genome_file -> extract_mitochondrial_fasta	[_draw_="c 7 -#000000 B 10 2286.92 231.54 2316.19 228.28 2350.71 224.9 2382 223 2579.89 210.99 2630.08 226.43 2828 215 2888.5 211.51 2956.78 \
204.37 3007.45 198.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3007.58 200.91 3014.25 197.66 3007.01 196.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2961.5 208.6 0 57 14 -reference_file ",
		label=reference_file,
		lp="2961.5,210.5",
		pos="e,3015.7,197.49 2286.9,231.54 2316.2,228.28 2350.7,224.9 2382,223 2579.9,210.99 2630.1,226.43 2828,215 2888.5,211.51 2956.8,204.37 \
3007.5,198.46"];
	limit_genome_generate_ram -> star_generate_indices	[_draw_="c 7 -#000000 B 7 499.61 231.54 615.07 218.2 849.61 192.32 1049 178 1308.2 159.38 1617.02 149.5 1752.92 145.77 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1752.79 148.23 1759.72 145.59 1752.65 143.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1107 186.1 0 116 25 -limit_genome_generate_ram ",
		label=limit_genome_generate_ram,
		lp="1107,188",
		pos="e,1761.2,145.55 499.61,231.54 615.07,218.2 849.61,192.32 1049,178 1308.2,159.38 1617,149.5 1752.9,145.77"];
	prepare_annotation	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2576 178.5 2576 197.5 2688 197.5 2688 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2632 185.5 0 96 18 -prepare_annotation ",
		height=0.27778,
		label=prepare_annotation,
		pos="2632,188",
		rects="2576,178.5,2688,197.5",
		width=1.5556];
	annotation_tab -> prepare_annotation	[_draw_="c 7 -#000000 B 4 2581.07 231.58 2590.49 223.71 2604.71 211.82 2615.74 202.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2617.15 204.61 2620.95 198.24 2614.01 200.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2651.5 208.6 0 83 17 -genome_annotation ",
		label=genome_annotation,
		lp="2651.5,210.5",
		pos="e,2622.1,197.26 2581.1,231.58 2590.5,223.71 2604.7,211.82 2615.7,202.6"];
	mitochondrial_annotation_tab -> prepare_annotation	[_draw_="c 7 -#000000 B 7 2778.15 231.53 2755.71 224.51 2722.84 214.37 2694 206 2686.76 203.9 2679.02 201.72 2671.55 199.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2672.45 197.36 2665.05 197.87 2671.15 202.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2774 208.6 0 106 24 -mitochondrial_annotation ",
		label=mitochondrial_annotation,
		lp="2774,210.5",
		pos="e,2663.6,197.47 2778.2,231.53 2755.7,224.51 2722.8,214.37 2694,206 2686.8,203.9 2679,201.72 2671.6,199.66"];
	chromosome_list -> extract_fasta	[_draw_="c 7 -#000000 B 13 1581.6 231.51 1612.02 228.62 1646.52 225.49 1678 223 1793.88 213.82 1822.93 212.43 1939 206 2016.74 201.69 2036.55 \
205.97 2114 198 2116.39 197.75 2118.83 197.47 2121.29 197.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2121.58 199.6 2128.2 196.24 2120.93 194.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1953.5 208.6 0 29 8 -chr_list ",
		label=chr_list,
		lp="1953.5,210.5",
		pos="e,2129.7,196.04 1581.6,231.51 1612,228.62 1646.5,225.49 1678,223 1793.9,213.82 1822.9,212.43 1939,206 2016.7,201.69 2036.5,205.97 \
2114,198 2116.4,197.75 2118.8,197.47 2121.3,197.17"];
	chromosome_list -> prepare_annotation	[_draw_="c 7 -#000000 B 13 1574.75 231.51 1606.75 228.36 1644.11 225.05 1678 223 1805.37 215.28 1837.54 221.05 1965 215 2024.62 212.17 2039.38 \
208.95 2099 206 2268.14 197.63 2467.69 192.54 2567.84 190.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2567.88 192.77 2574.83 190.16 2567.78 187.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2134 208.6 0 70 15 -chromosome_list ",
		label=chromosome_list,
		lp="2134,210.5",
		pos="e,2576.3,190.13 1574.7,231.51 1606.8,228.36 1644.1,225.05 1678,223 1805.4,215.28 1837.5,221.05 1965,215 2024.6,212.17 2039.4,208.95 \
2099,206 2268.1,197.63 2467.7,192.54 2567.8,190.32"];
	genome_sa_sparse_d -> mitochondrial_generate_indices	[_draw_="c 7 -#000000 B 16 1946.66 231.53 1981.22 228.26 2022.05 224.86 2059 223 2199.94 215.91 2553.67 229.94 2694 215 2776.51 206.22 2795.37 \
192.92 2877 178 2923.07 169.58 2934.62 167.54 2981 161 2999.76 158.35 3019.95 155.78 3039.07 153.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3039.32 155.91 3045.98 152.65 3038.74 151.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2921 186.1 0 88 18 -genome_sa_sparse_d ",
		label=genome_sa_sparse_d,
		lp="2921,188",
		pos="e,3047.5,152.47 1946.7,231.53 1981.2,228.26 2022,224.86 2059,223 2199.9,215.91 2553.7,229.94 2694,215 2776.5,206.22 2795.4,192.92 \
2877,178 2923.1,169.58 2934.6,167.54 2981,161 2999.8,158.35 3019.9,155.78 3039.1,153.48"];
	genome_sa_sparse_d -> star_generate_indices	[_draw_="c 7 -#000000 B 4 1862.33 231.82 1855.23 215.95 1839.47 180.78 1830.2 160.08 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1832.5 159.21 1827.4 153.82 1828.02 161.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1890 186.1 0 88 18 -genome_sa_sparse_d ",
		label=genome_sa_sparse_d,
		lp="1890,188",
		pos="e,1826.8,152.44 1862.3,231.82 1855.2,215.95 1839.5,180.78 1830.2,160.08"];
	genome_sa_index_n_bases_mitochondrial -> mitochondrial_generate_indices	[_draw_="c 7 -#000000 B 7 3269.45 231.54 3248.47 216.37 3202.44 183.99 3161 161 3157.94 159.3 3154.68 157.63 3151.41 156.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3152.61 153.88 3145.23 153.1 3150.51 158.31 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3275.5 186.1 0 111 23 -genome_sa_index_n_bases ",
		label=genome_sa_index_n_bases,
		lp="3275.5,188",
		pos="e,3143.9,152.46 3269.4,231.54 3248.5,216.37 3202.4,183.99 3161,161 3157.9,159.3 3154.7,157.63 3151.4,156.03"];
	extract_cytoband	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 3897.5 178.5 3897.5 197.5 3998.5 197.5 3998.5 178.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 3948 185.5 0 85 16 -extract_cytoband ",
		height=0.27778,
		label=extract_cytoband,
		pos="3948,188",
		rects="3897.5,178.5,3998.5,197.5",
		width=1.4028];
	cytoband -> extract_cytoband	[_draw_="c 7 -#000000 B 7 3851.72 231.58 3864.37 226.95 3880.15 220.94 3894 215 3904.01 210.7 3914.86 205.57 3924.2 201.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3925.08 203.31 3930.27 198.01 3922.91 198.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3932 208.6 0 38 10 -input_file ",
		label=input_file,
		lp="3932,210.5",
		pos="e,3931.6,197.34 3851.7,231.58 3864.4,226.95 3880.2,220.94 3894,215 3904,210.7 3914.9,205.57 3924.2,201.01"];
	ribosomal_generate_indices -> ribosomal_indices	[_draw_="c 7 -#000000 B 4 3867.54 88.58 3844.8 80.05 3809.49 66.81 3784.29 57.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3785.32 55.13 3777.91 54.97 3783.6 59.72 ",
		pos="e,3776.5,54.434 3867.5,88.578 3844.8,80.052 3809.5,66.81 3784.3,57.359"];
	ribosomal_generate_indices -> ribosomal_indices_stdout_log	[_draw_="c 7 -#000000 B 4 3901.06 88.58 3911.5 80.63 3927.32 68.59 3939.48 59.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3940.85 61.37 3944.94 55.18 3937.88 57.47 ",
		pos="e,3946.1,54.265 3901.1,88.578 3911.5,80.632 3927.3,68.59 3939.5,59.338"];
	ribosomal_generate_indices -> ribosomal_indices_stderr_log	[_draw_="c 7 -#000000 B 10 3914.52 88.5 3932.44 82.64 3957.45 75.17 3980 71 4021.23 63.37 4032.34 67.74 4074 63 4092.25 60.92 4112.02 58.26 \
4130.1 55.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4130.21 58.13 4136.79 54.7 4129.51 53.28 ",
		pos="e,4138.3,54.483 3914.5,88.501 3932.4,82.638 3957.5,75.175 3980,71 4021.2,63.367 4032.3,67.745 4074,63 4092.3,60.921 4112,58.262 \
4130.1,55.668"];
	mitochondrial_generate_indices -> mitochondrial_indices	[_draw_="c 7 -#000000 B 4 3142.36 133.65 3179.92 116.56 3265.67 77.54 3308.97 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3309.8 60.16 3315.16 55.03 3307.77 55.7 ",
		pos="e,3316.5,54.4 3142.4,133.65 3179.9,116.56 3265.7,77.542 3309,57.844"];
	mitochondrial_generate_indices -> mitochondrial_indices_stdout_log	[_draw_="c 7 -#000000 B 4 3161.17 133.56 3238.72 115.96 3417.55 75.38 3501.68 56.28 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3502.01 58.72 3508.29 54.79 3500.92 53.95 ",
		pos="e,3509.8,54.45 3161.2,133.56 3238.7,115.96 3417.5,75.379 3501.7,56.285"];
	mitochondrial_generate_indices -> mitochondrial_indices_stderr_log	[_draw_="c 7 -#000000 B 4 3124 133.82 3124 118.17 3124 83.71 3124 62.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3126.45 62.95 3124 55.95 3121.55 62.95 ",
		pos="e,3124,54.438 3124,133.82 3124,118.17 3124,83.71 3124,62.915"];
	extract_fasta -> fasta_output	[_draw_="c 7 -#000000 B 10 2197.09 178.52 2200.62 176.3 2203.78 173.5 2206 170 2208.14 166.62 2206.62 164.95 2206 161 2200.29 124.6 2184.99 \
84 2175.95 62.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2178.28 61.33 2173.31 55.83 2173.77 63.23 ",
		pos="e,2172.7,54.432 2197.1,178.52 2200.6,176.3 2203.8,173.5 2206,170 2208.1,166.62 2206.6,164.95 2206,161 2200.3,124.6 2185,84.001 2176,\
62.108"];
	extract_fasta -> star_generate_indices	[_draw_="c 7 -#000000 B 10 2129.77 180.53 2108.33 176.87 2085.45 172.52 2081 170 2076.35 167.36 2077.8 163.36 2073 161 2057.19 153.24 1961.37 \
148.5 1893.07 146.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1893.48 143.62 1886.4 145.82 1893.31 148.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2121 163.6 0 80 18 -genome_fasta_files ",
		label=genome_fasta_files,
		lp="2121,165.5",
		pos="e,1884.9,145.77 2129.8,180.53 2108.3,176.87 2085.4,172.52 2081,170 2076.3,167.36 2077.8,163.36 2073,161 2057.2,153.24 1961.4,148.5 \
1893.1,146.06"];
	index_fasta	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2078 133.5 2078 152.5 2152 152.5 2152 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2115 140.5 0 58 11 -index_fasta ",
		height=0.27778,
		label=index_fasta,
		pos="2115,143",
		rects="2078,133.5,2152,152.5",
		width=1.0278];
	extract_fasta -> index_fasta	[_draw_="c 7 -#000000 B 7 2169.37 178.77 2168.53 173.11 2166.56 165.79 2162 161 2160.53 159.46 2158.92 158.06 2157.19 156.79 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2158.65 154.8 2151.39 153.26 2156.1 158.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2186 163.6 0 38 10 -fasta_file ",
		label=fasta_file,
		lp="2186,165.5",
		pos="e,2150.1,152.47 2169.4,178.77 2168.5,173.11 2166.6,165.79 2162,161 2160.5,159.46 2158.9,158.06 2157.2,156.79"];
	extract_fasta -> bowtie_generate_indices	[_draw_="c 7 -#000000 B 4 2210.35 180.67 2307.13 165.49 2553.05 126.91 2668.87 108.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2668.95 111.21 2675.49 107.71 2668.19 106.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2525 141.1 0 38 10 -fasta_file ",
		label=fasta_file,
		lp="2525,143",
		pos="e,2677,107.47 2210.3,180.67 2307.1,165.49 2553.1,126.91 2668.9,108.75"];
	star_generate_indices -> star_indices	[_draw_="c 7 -#000000 B 4 1809.69 133.65 1782.9 116.84 1722.32 78.83 1690.46 58.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1691.9 56.85 1684.67 55.2 1689.3 61 ",
		pos="e,1683.4,54.4 1809.7,133.65 1782.9,116.84 1722.3,78.831 1690.5,58.841"];
	star_generate_indices -> chrom_length	[_draw_="c 7 -#000000 B 4 1823 133.82 1823 118.17 1823 83.71 1823 62.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1825.45 62.95 1823 55.95 1820.55 62.95 ",
		pos="e,1823,54.438 1823,133.82 1823,118.17 1823,83.71 1823,62.915"];
	star_generate_indices -> star_indices_stdout_log	[_draw_="c 7 -#000000 B 4 1778.63 133.56 1685.57 115.88 1470.39 74.97 1370.59 56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1371.27 53.63 1363.94 54.73 1370.36 58.45 ",
		pos="e,1362.5,54.45 1778.6,133.56 1685.6,115.88 1470.4,74.969 1370.6,55.997"];
	star_generate_indices -> star_indices_stderr_log	[_draw_="c 7 -#000000 B 4 1795.59 133.56 1738.95 116.14 1609.08 76.18 1546.28 56.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1547.1 54.54 1539.69 54.83 1545.66 59.23 ",
		pos="e,1538.2,54.382 1795.6,133.56 1738.9,116.14 1609.1,76.177 1546.3,56.856"];
	annotation_bed_to_bigbed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4930 35.5 4930 54.5 5076 54.5 5076 35.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5003 42.5 0 130 24 -annotation_bed_to_bigbed ",
		height=0.27778,
		label=annotation_bed_to_bigbed,
		pos="5003,45",
		rects="4930,35.5,5076,54.5",
		width=2.0278];
	star_generate_indices -> annotation_bed_to_bigbed	[_draw_="c 7 -#000000 B 13 1884.85 139.41 1936.07 137.36 2010.75 134.59 2076 133 2917.16 112.49 3127.98 133.38 3969 108 4022.03 106.4 4870.38 \
69.79 4923 63 4935.47 61.39 4948.89 58.86 4961.1 56.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4961.56 58.65 4967.86 54.75 4960.5 53.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4467.5 96.1 0 73 17 -chrom_length_file ",
		label=chrom_length_file,
		lp="4467.5,98",
		pos="e,4969.3,54.42 1884.9,139.41 1936.1,137.36 2010.8,134.59 2076,133 2917.2,112.49 3128,133.38 3969,108 4022,106.4 4870.4,69.787 4923,\
63 4935.5,61.392 4948.9,58.861 4961.1,56.24"];
	sort_annotation_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 4697 88.5 4697 107.5 4813 107.5 4813 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4755 95.5 0 100 19 -sort_annotation_bed ",
		height=0.27778,
		label=sort_annotation_bed,
		pos="4755,98",
		rects="4697,88.5,4813,107.5",
		width=1.6111];
	sort_annotation_bed -> annotation_bed	[_draw_="c 7 -#000000 B 4 4742.45 88.58 4730.46 80.53 4712.21 68.29 4698.36 58.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4700 57.14 4692.83 55.28 4697.27 61.21 ",
		pos="e,4691.6,54.434 4742.5,88.578 4730.5,80.532 4712.2,68.286 4698.4,58.989"];
	sort_annotation_bed -> annotation_bed_to_bigbed	[_draw_="c 7 -#000000 B 10 4784.53 88.5 4805.01 82.87 4832.98 75.68 4858 71 4886.61 65.65 4894.29 67.81 4923 63 4934.49 61.08 4946.84 58.64 \
4958.31 56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4958.68 58.64 4965.01 54.78 4957.65 53.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4891.5 73.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="4891.5,75.5",
		pos="e,4966.5,54.457 4784.5,88.502 4805,82.868 4833,75.678 4858,71 4886.6,65.65 4894.3,67.807 4923,63 4934.5,61.075 4946.8,58.637 4958.3,\
56.213"];
	sort_annotation_bed -> annotation_bed_to_bigbed	[_draw_="c 7 -#000000 B 7 4812.93 95.31 4845.4 93.32 4886.42 89.06 4922 80 4942.19 74.86 4963.91 65.52 4979.76 57.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4980.47 60.31 4985.69 55.03 4978.32 55.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4969.5 73.6 0 41 9 -input_bed ",
		label=input_bed,
		lp="4969.5,75.5",
		pos="e,4987,54.367 4812.9,95.313 4845.4,93.324 4886.4,89.064 4922,80 4942.2,74.856 4963.9,65.517 4979.8,57.926"];
	prepare_annotation -> annotation	[_draw_="c 7 -#000000 B 10 2635.21 178.56 2642.7 157.23 2658.66 100.72 2630 71 2618.49 59.07 2497.35 65.76 2481 63 2472.32 61.54 2463.1 59.25 \
2454.59 56.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2455.55 54.55 2448.14 54.9 2454.15 59.24 ",
		pos="e,2446.7,54.467 2635.2,178.56 2642.7,157.23 2658.7,100.72 2630,71 2618.5,59.065 2497.3,65.757 2481,63 2472.3,61.536 2463.1,59.246 \
2454.6,56.817"];
	prepare_annotation -> annotation_gtf	[_draw_="c 7 -#000000 B 7 2620.34 178.69 2604.05 167.33 2573.28 146.79 2545 133 2476.66 99.68 2392.12 71.57 2344.71 56.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2345.72 54.66 2338.31 54.94 2344.28 59.34 ",
		pos="e,2336.9,54.5 2620.3,178.69 2604,167.33 2573.3,146.79 2545,133 2476.7,99.679 2392.1,71.57 2344.7,56.908"];
	prepare_annotation -> mitochondrial_generate_indices	[_draw_="c 7 -#000000 B 10 2687.87 181.63 2701.37 179.12 2715.5 175.42 2728 170 2734.12 167.35 2733.72 163.25 2740 161 2740.85 160.7 2915.76 \
153.05 3029.19 148.11 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3029.19 150.57 3036.08 147.81 3028.98 145.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2764.5 163.6 0 49 13 -sjdb_gtf_file ",
		label=sjdb_gtf_file,
		lp="2764.5,165.5",
		pos="e,3037.6,147.75 2687.9,181.63 2701.4,179.12 2715.5,175.42 2728,170 2734.1,167.35 2733.7,163.25 2740,161 2740.8,160.7 2915.8,153.05 \
3029.2,148.11"];
	prepare_annotation -> star_generate_indices	[_draw_="c 7 -#000000 B 7 2576.19 183.3 2494.82 177.97 2338.82 168 2206 161 2096.66 155.24 1969.69 149.86 1892.9 146.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1893.31 144.32 1886.22 146.48 1893.11 149.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2382.5 163.6 0 49 13 -sjdb_gtf_file ",
		label=sjdb_gtf_file,
		lp="2382.5,165.5",
		pos="e,1884.7,146.42 2576.2,183.3 2494.8,177.97 2338.8,168 2206,161 2096.7,155.24 1969.7,149.86 1892.9,146.75"];
	convert_annotation_to_bed	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 2764.5 133.5 2764.5 152.5 2913.5 152.5 2913.5 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 2839 140.5 0 133 25 -convert_annotation_to_bed ",
		height=0.27778,
		label=convert_annotation_to_bed,
		pos="2839,143",
		rects="2764.5,133.5,2913.5,152.5",
		width=2.0694];
	prepare_annotation -> convert_annotation_to_bed	[_draw_="c 7 -#000000 B 7 2636.31 178.69 2639.91 172.68 2645.63 164.94 2653 161 2670.79 151.48 2715.23 147.2 2756.2 145.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2756.21 147.77 2763.1 145.02 2756 142.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 2692 163.6 0 78 19 -annotation_tsv_file ",
		label=annotation_tsv_file,
		lp="2692,165.5",
		pos="e,2764.6,144.96 2636.3,178.69 2639.9,172.68 2645.6,164.94 2653,161 2670.8,151.48 2715.2,147.2 2756.2,145.31"];
	annotation_bed_to_bigbed -> annotation_bed_tbi;
	convert_annotation_to_bed -> sort_annotation_bed	[_draw_="c 7 -#000000 B 10 2913.35 137.98 2950.22 136.15 2995.45 134.14 3036 133 3378.11 123.41 3463.82 131.46 3806 125 4137.55 118.74 4534.13 \
106.26 4688.73 101.2 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4688.81 103.65 4695.72 100.97 4688.65 98.75 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4198 118.6 0 54 13 -unsorted_file ",
		label=unsorted_file,
		lp="4198,120.5",
		pos="e,4697.2,100.92 2913.3,137.98 2950.2,136.15 2995.4,134.14 3036,133 3378.1,123.41 3463.8,131.46 3806,125 4137.6,118.74 4534.1,106.26 \
4688.7,101.2"];
	extract_cytoband -> cytoband_output	[_draw_="c 7 -#000000 B 10 3948.95 178.65 3951.97 156.5 3963.55 96.22 4002 71 4016.27 61.64 4292.05 64.92 4309 63 4322.47 61.47 4336.99 58.88 \
4350.1 56.17 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4350.25 58.65 4356.59 54.8 4349.23 53.85 ",
		pos="e,4358.1,54.482 3949,178.65 3952,156.5 3963.6,96.222 4002,71 4016.3,61.642 4292,64.922 4309,63 4322.5,61.473 4337,58.881 4350.1,\
56.174"];
	extract_mitochondrial_fasta -> mitochondrial_generate_indices	[_draw_="c 7 -#000000 B 7 3081.15 178.55 3080.45 173.08 3080.51 166.06 3084 161 3084.93 159.65 3085.99 158.4 3087.16 157.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3088.38 159.41 3092.48 153.23 3085.42 155.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3124 163.6 0 80 18 -genome_fasta_files ",
		label=genome_fasta_files,
		lp="3124,165.5",
		pos="e,3093.7,152.31 3081.2,178.55 3080.4,173.08 3080.5,166.06 3084,161 3084.9,159.65 3086,158.4 3087.2,157.26"];
	index_fasta -> fasta_fai_output	[_draw_="c 7 -#000000 B 4 2105.2 133.82 2085.43 117.32 2040.65 79.93 2016.37 59.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2018.21 58.01 2011.27 55.41 2015.07 61.77 ",
		pos="e,2010.1,54.438 2105.2,133.82 2085.4,117.32 2040.6,79.93 2016.4,59.667"];
	bowtie_generate_indices -> bowtie_indices_stderr_log	[_draw_="c 7 -#000000 B 4 2704.58 88.58 2677.48 79.94 2635.21 66.47 2605.49 56.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2606.32 54.69 2598.9 54.89 2604.83 59.35 ",
		pos="e,2597.5,54.434 2704.6,88.578 2677.5,79.941 2635.2,66.465 2605.5,56.992"];
	bowtie_generate_indices -> bowtie_indices	[_draw_="c 7 -#000000 B 4 2731 88.58 2731 81.52 2731 71.24 2731 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2733.45 62.78 2731 55.78 2728.55 62.78 ",
		pos="e,2731,54.265 2731,88.578 2731,81.523 2731,71.24 2731,62.547"];
	bowtie_generate_indices -> bowtie_indices_stdout_log	[_draw_="c 7 -#000000 B 4 2758.91 88.58 2787.65 79.9 2832.57 66.35 2863.98 56.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 2864.61 59.24 2870.6 54.87 2863.19 54.55 ",
		pos="e,2872.1,54.434 2758.9,88.578 2787.7,79.904 2832.6,66.35 2864,56.871"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 4707.5 133.5 4707.5 152.5 4754.5 152.5 4754.5 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4731 140.5 0 31 6 -\"2,2n\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"2,2n\"",
		pos="4731,143",
		rects="4707.5,133.5,4754.5,152.5",
		width=0.65278];
	default1 -> sort_annotation_bed	[_draw_="c 7 -#000000 B 4 4735.63 133.71 4738.68 128.24 4742.78 120.9 4746.42 114.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4748.38 115.89 4749.65 108.59 4744.1 113.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4752.5 118.6 0 15 3 -key ",
		label=key,
		lp="4752.5,120.5",
		pos="e,4750.4,107.27 4735.6,133.71 4738.7,128.24 4742.8,120.9 4746.4,114.38"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 4758.5 133.5 4758.5 152.5 4799.5 152.5 4799.5 133.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4779 140.5 0 25 5 -\"1,1\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"1,1\"",
		pos="4779,143",
		rects="4758.5,133.5,4799.5,152.5",
		width=0.56944];
	default2 -> sort_annotation_bed	[_draw_="c 7 -#000000 B 4 4774.37 133.71 4771.32 128.24 4767.22 120.9 4763.58 114.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 4765.9 113.51 4760.35 108.59 4761.62 115.89 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 4776.5 118.6 0 15 3 -key ",
		label=key,
		lp="4776.5,120.5",
		pos="e,4759.6,107.27 4774.4,133.71 4771.3,128.24 4767.2,120.9 4763.6,114.38"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 4971 88.5 4971 107.5 5035 107.5 5035 88.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 5003 95.5 0 48 8 -\"bed4+8\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"bed4+8\"",
		pos="5003,98",
		rects="4971,88.5,5035,107.5",
		width=0.88889];
	default3 -> annotation_bed_to_bigbed	[_draw_="c 7 -#000000 B 4 5003 88.58 5003 81.52 5003 71.24 5003 62.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 5005.45 62.78 5003 55.78 5000.55 62.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 5022 73.6 0 38 8 -bed_type ",
		label=bed_type,
		lp="5022,75.5",
		pos="e,5003,54.265 5003,88.578 5003,81.523 5003,71.24 5003,62.547"];
	default4	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 4085 231.5 4085 250.5 4135 250.5 4135 231.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 4110 238.5 0 34 6 -\"chrM\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"chrM\"",
		pos="4110,241",
		rects="4085,231.5,4135,250.5",
		width=0.69444];
	default4 -> extract_mitochondrial_fasta	[_draw_="c 7 -#000000 B 7 4097.48 231.62 4091.79 228.28 4084.81 224.8 4078 223 4066.3 219.91 3258.09 200.79 3165.43 197.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 3165.74 195.37 3158.65 197.55 3165.55 200.26 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 3819.5 208.6 0 29 8 -chr_list ",
		label=chr_list,
		lp="3819.5,210.5",
		pos="e,3157.1,197.49 4097.5,231.62 4091.8,228.28 4084.8,224.8 4078,223 4066.3,219.91 3258.1,200.79 3165.4,197.81"];
}