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		normal_sample_name	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 259.5 403.5 259.5 422.5 384.5 422.5 384.5 403.5 ",
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			pos="1763,413",
			rects="1688.5,403.5,1837.5,422.5",
			width=2.0694];
	}
	subgraph cluster_outputs {
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		filtered_vcf	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1239.5 35.5 1239.5 54.5 1310.5 54.5 1310.5 35.5 ",
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			width=0.98611];
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	filter_vcf_depth	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 397 170.5 397 189.5 747 189.5 747 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 572 177.5 0 334 68 -filter variants at sites below a given sequence depth in each sample ",
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		pos="572,180",
		rects="397,170.5,747,189.5",
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	filter_minimum_depth -> filter_vcf_depth	[_draw_="c 7 -#000000 B 10 463.97 403.53 475.98 394.55 492 379.18 492 361 492 361 492 361 492 224 492 208.69 503.5 198.81 517.79 192.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 518.44 194.82 524.06 189.98 516.64 190.26 ",
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		label=minimum_depth,
		lp="525,292.5",
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		pos="724,270",
		rects="573,260.5,875,279.5",
		width=4.1944];
	tumor_bam -> filter_vcf_mapq0	[_draw_="c 7 -#000000 B 10 642.24 403.51 623.71 390.01 592.43 362.17 601 333 605.17 318.81 607.28 314.03 619 305 632.96 294.25 650.44 286.83 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 667.69 284.13 673.75 279.85 666.34 279.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 624 335.6 0 46 9 -tumor_bam ",
		label=tumor_bam,
		lp="624,337.5",
		pos="e,675.2,279.43 642.24,403.51 623.71,390.01 592.43,362.17 601,333 605.17,318.81 607.28,314.03 619,305 632.96,294.25 650.44,286.83 \
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	filter_mapq0_threshold -> filter_vcf_mapq0	[_draw_="c 7 -#000000 B 7 1348.67 403.56 1377.35 392.47 1418.43 371.83 1399 350 1389.41 339.22 1000.34 298.79 817.34 280.31 ",
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		label=threshold,
		lp="1379,337.5",
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		height=0.27778,
		label="use the binomial/llr somatic filter to weed out low confidence variants",
		pos="1275,135",
		rects="1096,125.5,1454,144.5",
		width=4.9722];
	filter_somatic_llr_normal_contamination_rate -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 13 146.02 403.74 156.05 394.47 170 378.45 170 361 170 361 170 361 170 179 170 133.74 326.86 156.32 372 153 506 143.14 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 226 268.1 0 112 25 -normal_contamination_rate ",
		label=normal_contamination_rate,
		lp="226,270",
		pos="e,1096.4,137.05 146.02,403.74 156.05,394.47 170,378.45 170,361 170,361 170,361 170,179 170,133.74 326.86,156.32 372,153 506,143.14 \
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	tumor_sample_name -> filter_vcf_depth	[_draw_="c 7 -#000000 B 10 1458.71 403.68 1468.58 388.17 1486.28 354.46 1470 333 1442.11 296.23 1415.11 314.78 1370 305 1110.8 248.78 798.92 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 654.45 188.06 647.2 189.66 653.86 192.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1360 290.6 0 62 12 -sample_names ",
		label=sample_names,
		lp="1360,292.5",
		pos="e,645.7,189.48 1458.7,403.68 1468.6,388.17 1486.3,354.46 1470,333 1442.1,296.23 1415.1,314.78 1370,305 1110.8,248.78 798.92,207.94 \
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	tumor_sample_name -> filter_vcf_mapq0	[_draw_="c 7 -#000000 B 10 1450.1 403.52 1443.88 386.79 1427.54 349.69 1400 333 1223.19 225.85 1143.08 304.61 937 288 905.26 285.44 870.86 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 839.4 277.72 832.23 279.61 839.01 282.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1440 335.6 0 58 11 -sample_name ",
		label=sample_name,
		lp="1440,337.5",
		pos="e,830.72,279.49 1450.1,403.52 1443.9,386.79 1427.5,349.69 1400,333 1223.2,225.85 1143.1,304.61 937,288 905.26,285.44 870.86,282.69 \
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	tumor_sample_name -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 10 1472.55 403.55 1488.35 395.25 1508 380.92 1508 361 1508 361 1508 361 1508 179 1508 162.9 1486.23 152.63 1455.99 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1550.5 268.1 0 85 17 -tumor_sample_name ",
		label=tumor_sample_name,
		lp="1550.5,270",
		pos="e,1447.7,144.47 1472.5,403.55 1488.4,395.25 1508,380.92 1508,361 1508,361 1508,361 1508,179 1508,162.9 1486.2,152.63 1456,146.13"];
	filter_known_variants	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 857.5 350.5 857.5 369.5 1398.5 369.5 1398.5 350.5 ",
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		pos="1128,360",
		rects="857.5,350.5,1398.5,369.5",
		width=7.5139];
	vcf -> filter_known_variants	[_draw_="c 7 -#000000 B 4 1128 403.58 1128 396.52 1128 386.24 1128 377.55 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1134.5 380.6 0 13 3 -vcf ",
		label=vcf,
		lp="1134.5,382.5",
		pos="e,1128,369.26 1128,403.58 1128,396.52 1128,386.24 1128,377.55"];
	filter_vcf_gnomADe_allele_freq	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 620.5 305.5 620.5 324.5 781.5 324.5 781.5 305.5 ",
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		height=0.27778,
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		pos="701,315",
		rects="620.5,305.5,781.5,324.5",
		width=2.2361];
	filter_gnomADe_maximum_population_allele_frequency -> filter_vcf_gnomADe_allele_freq	[_draw_="c 7 -#000000 B 7 894.3 403.52 817.64 393.6 702.45 377.55 696 370 687.24 359.75 689.85 344.06 693.84 332.23 ",
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		label=maximum_population_allele_frequency,
		lp="776,360",
		pos="e,696.86,324.44 894.3,403.52 817.64,393.6 702.45,377.55 696,370 687.24,359.75 689.85,344.06 693.84,332.23"];
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		height=0.27778,
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		pos="572,225",
		rects="505,215.5,639,234.5",
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	do_cle_vcf_filter -> filter_vcf_cle	[_draw_="c 7 -#000000 B 10 566 403.7 566 393.6 566 376.05 566 361 566 361 566 361 566 269 566 260.13 567.27 250.32 568.64 242.32 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 575.5 313.1 0 19 6 -filter ",
		label=filter,
		lp="575.5,315",
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	filter_somatic_llr_tumor_purity -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 10 1601 403.7 1601 393.6 1601 376.05 1601 361 1601 361 1601 361 1601 179 1601 161.99 1530.37 151.5 1454.86 145.15 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1627 268.1 0 52 12 -tumor_purity ",
		label=tumor_purity,
		lp="1627,270",
		pos="e,1446.6,144.47 1601,403.7 1601,393.6 1601,376.05 1601,361 1601,361 1601,361 1601,179 1601,161.99 1530.4,151.5 1454.9,145.15"];
	gnomad_field_name -> filter_vcf_gnomADe_allele_freq	[_draw_="c 7 -#000000 B 10 726.55 403.51 695.05 393.49 647.04 377.28 642 370 636.94 362.69 637.55 357.7 642 350 647.56 340.38 657 333.23 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 665 358.1 0 46 10 -field_name ",
		label=field_name,
		lp="665,360",
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328.05"];
	validated_variants -> filter_known_variants	[_draw_="c 7 -#000000 B 4 1189.78 403.58 1178.21 395.61 1160.66 383.51 1147.22 374.25 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1203 380.6 0 76 18 -validated_variants ",
		label=validated_variants,
		lp="1203,382.5",
		pos="e,1140.2,369.43 1189.8,403.58 1178.2,395.61 1160.7,383.51 1147.2,374.25"];
	normal_sample_name -> filter_vcf_depth	[_draw_="c 7 -#000000 B 10 349.56 403.51 378.55 393.74 420 376.97 420 361 420 361 420 361 420 224 420 207.88 452.06 197.49 486.74 190.98 ",
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		label=sample_names,
		lp="451,292.5",
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	normal_sample_name -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 10 322.26 403.7 322.56 393.6 323 376.05 323 361 323 361 323 361 323 179 323 141.1 810.83 135.43 1088.08 135.26 ",
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		label=normal_sample_name,
		lp="368,270",
		pos="e,1096.2,135.26 322.26,403.7 322.56,393.6 323,376.05 323,361 323,361 323,361 323,179 323,141.1 810.83,135.43 1088.1,135.26"];
	filter_somatic_llr_threshold -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 10 1745.45 403.51 1730.7 395.01 1712 380.41 1712 361 1712 361 1712 361 1712 179 1712 152.24 1580.56 141.9 1461.85 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1732 268.1 0 40 9 -threshold ",
		label=threshold,
		lp="1732,270",
		pos="e,1453.7,137.76 1745.4,403.51 1730.7,395.01 1712,380.41 1712,361 1712,361 1712,361 1712,179 1712,152.24 1580.6,141.9 1461.9,138.02"];
	set_final_vcf_name	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1226 80.5 1226 99.5 1324 99.5 1324 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1275 87.5 0 82 14 -Staged Renamer ",
		height=0.27778,
		label="Staged Renamer",
		pos="1275,90",
		rects="1226,80.5,1324,99.5",
		width=1.3611];
	set_final_vcf_name -> filtered_vcf	[_draw_="c 7 -#000000 B 4 1275 80.71 1275 75.59 1275 68.85 1275 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1277.45 62.78 1275 55.78 1272.55 62.78 ",
		pos="e,1275,54.265 1275,80.709 1275,75.593 1275,68.848 1275,62.666"];
	filter_vcf_depth -> filter_vcf_somatic_llr	[_draw_="c 7 -#000000 B 4 710.89 170.5 831.27 163.14 1004.94 152.52 1127.72 145.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.75 147.46 1134.59 144.59 1127.45 142.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 992.5 155.6 0 13 3 -vcf ",
		label=vcf,
		lp="992.5,157.5",
		pos="e,1136.1,144.5 710.89,170.5 831.27,163.14 1004.9,152.52 1127.7,145.01"];
	filter_vcf_gnomADe_allele_freq -> filter_vcf_mapq0	[_draw_="c 7 -#000000 B 4 705.43 305.71 708.36 300.24 712.29 292.9 715.77 286.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 717.72 287.93 718.87 280.6 713.4 285.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 720.5 290.6 0 13 3 -vcf ",
		label=vcf,
		lp="720.5,292.5",
		pos="e,719.58,279.27 705.43,305.71 708.36,300.24 712.29,292.9 715.77,286.38"];
	filter_vcf_cle -> filter_vcf_depth	[_draw_="c 7 -#000000 B 4 572 215.71 572 210.59 572 203.85 572 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 574.45 197.78 572 190.78 569.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 578.5 200.6 0 13 3 -vcf ",
		label=vcf,
		lp="578.5,202.5",
		pos="e,572,189.27 572,215.71 572,210.59 572,203.85 572,197.67"];
	filter_vcf_mapq0 -> filter_vcf_cle	[_draw_="c 7 -#000000 B 4 693.97 260.5 669.92 253.7 636.05 244.12 610.09 236.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 610.83 234.44 603.42 234.89 609.49 239.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 667.5 245.6 0 13 3 -vcf ",
		label=vcf,
		lp="667.5,247.5",
		pos="e,601.97,234.48 693.97,260.5 669.92,253.7 636.05,244.12 610.09,236.78"];
	filter_known_variants -> filter_vcf_gnomADe_allele_freq	[_draw_="c 7 -#000000 B 4 1043.64 350.5 970.12 343.1 863.88 332.4 789.24 324.89 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 789.93 322.49 782.72 324.23 789.44 327.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 958.5 335.6 0 13 3 -vcf ",
		label=vcf,
		lp="958.5,337.5",
		pos="e,781.21,324.08 1043.6,350.5 970.12,343.1 863.88,332.4 789.24,324.89"];
	filter_vcf_somatic_llr -> set_final_vcf_name	[_draw_="c 7 -#000000 B 4 1275 125.71 1275 120.59 1275 113.85 1275 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1277.45 107.78 1275 100.78 1272.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1290.5 110.6 0 31 8 -original ",
		label=original,
		lp="1290.5,112.5",
		pos="e,1275,99.265 1275,125.71 1275,120.59 1275,113.85 1275,107.67"];
}