digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 810 1762 810 1762 0 ",
		bb="0,0,1762,810",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
	];
	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 604 710 604 765 1396 765 1396 710 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 654 753 0 84 15 -Workflow Inputs ",
			bb="604,710,1396,765",
			label="Workflow Inputs",
			lheight=0.15,
			lp="654,755.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		input_fastq_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1179.5 718.5 1179.5 737.5 1276.5 737.5 1276.5 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1228 725.5 0 81 17 -input_fastq_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=input_fastq_files,
			pos="1228,728",
			rects="1179.5,718.5,1276.5,737.5",
			width=1.3472];
		picard_jar_path	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 716 718.5 716 737.5 808 737.5 808 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 762 725.5 0 76 15 -picard_jar_path ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=picard_jar_path,
			pos="762,728",
			rects="716,718.5,808,737.5",
			width=1.2778];
		genome_sizes_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1280.5 718.5 1280.5 737.5 1387.5 737.5 1387.5 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1334 725.5 0 91 17 -genome_sizes_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_sizes_file,
			pos="1334,728",
			rects="1280.5,718.5,1387.5,737.5",
			width=1.4861];
		ENCODE_blacklist_bedfile	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 812.5 718.5 812.5 737.5 955.5 737.5 955.5 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 884 725.5 0 127 24 -ENCODE_blacklist_bedfile ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=ENCODE_blacklist_bedfile,
			pos="884,728",
			rects="812.5,718.5,955.5,737.5",
			width=1.9861];
		picard_java_opts	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 612.5 718.5 612.5 737.5 711.5 737.5 711.5 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 662 725.5 0 83 16 -picard_java_opts ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=picard_java_opts,
			pos="662,728",
			rects="612.5,718.5,711.5,737.5",
			width=1.375];
		nthreads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 959.5 718.5 959.5 737.5 1018.5 737.5 1018.5 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 989 725.5 0 43 8 -nthreads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=nthreads,
			pos="989,728",
			rects="959.5,718.5,1018.5,737.5",
			width=0.81944];
		genome_ref_first_index_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1023 718.5 1023 737.5 1175 737.5 1175 718.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1099 725.5 0 136 27 -genome_ref_first_index_file ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=genome_ref_first_index_file,
			pos="1099,728",
			rects="1023,718.5,1175,737.5",
			width=2.1111];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 8 8 63 1754 63 1754 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 62 15 0 92 16 -Workflow Outputs ",
			bb="8,8,1754,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="62,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		output_bowtie_log	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1382.5 35.5 1382.5 54.5 1489.5 54.5 1489.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1436 42.5 0 91 17 -output_bowtie_log ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_bowtie_log,
			pos="1436,45",
			rects="1382.5,35.5,1489.5,54.5",
			width=1.4861];
		output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 853.5 35.5 853.5 54.5 1048.5 54.5 1048.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 951 42.5 0 179 34 -output_percent_mitochondrial_reads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_percent_mitochondrial_reads,
			pos="951,45",
			rects="853.5,35.5,1048.5,54.5",
			width=2.7083];
		output_pbc_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1650 35.5 1650 54.5 1746 54.5 1746 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1698 42.5 0 80 16 -output_pbc_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_pbc_files,
			pos="1698,45",
			rects="1650,35.5,1746,54.5",
			width=1.3333];
		output_preseq_c_curve_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1052.5 35.5 1052.5 54.5 1207.5 54.5 1207.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1130 42.5 0 139 27 -output_preseq_c_curve_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_preseq_c_curve_files,
			pos="1130,45",
			rects="1052.5,35.5,1207.5,54.5",
			width=2.1528];
		output_read_count_mapped	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1494 35.5 1494 54.5 1646 54.5 1646 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1570 42.5 0 136 24 -output_read_count_mapped ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_read_count_mapped,
			pos="1570,45",
			rects="1494,35.5,1646,54.5",
			width=2.1111];
		output_read_count_mapped_filtered	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454 35.5 454 54.5 646 54.5 646 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 550 42.5 0 176 33 -output_read_count_mapped_filtered ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_read_count_mapped_filtered,
			pos="550,45",
			rects="454,35.5,646,54.5",
			width=2.6667];
		output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 650.5 35.5 650.5 54.5 849.5 54.5 849.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 750 42.5 0 183 34 -output_data_sorted_dedup_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_sorted_dedup_bam_files,
			pos="750,45",
			rects="650.5,35.5,849.5,54.5",
			width=2.7639];
		output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 216 35.5 216 54.5 450 54.5 450 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 333 42.5 0 218 40 -output_data_sorted_dups_marked_bam_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_data_sorted_dups_marked_bam_files,
			pos="333,45",
			rects="216,35.5,450,54.5",
			width=3.25];
		output_percentage_uniq_reads	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1211.5 35.5 1211.5 54.5 1378.5 54.5 1378.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1295 42.5 0 151 28 -output_percentage_uniq_reads ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_percentage_uniq_reads,
			pos="1295,45",
			rects="1211.5,35.5,1378.5,54.5",
			width=2.3194];
		output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 35.5 16.5 54.5 211.5 54.5 211.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 114 42.5 0 179 35 -output_picard_mark_duplicates_files ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=output_picard_mark_duplicates_files,
			pos="114,45",
			rects="16.5,35.5,211.5,54.5",
			width=2.7083];
	}
	"bowtie-se"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1195.5 665.5 1195.5 684.5 1260.5 684.5 1260.5 665.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1228 672.5 0 49 9 -bowtie-se ",
		height=0.27778,
		label="bowtie-se",
		pos="1228,675",
		rects="1195.5,665.5,1260.5,684.5",
		width=0.90278];
	input_fastq_files -> "bowtie-se"	[_draw_="c 7 -#000000 B 4 1228 718.58 1228 711.52 1228 701.24 1228 692.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1230.45 692.78 1228 685.78 1225.55 692.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1259.5 695.6 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="1259.5,697.5",
		pos="e,1228,684.26 1228,718.58 1228,711.52 1228,701.24 1228,692.55"];
	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1285.5 790.5 1285.5 809.5 1404.5 809.5 1404.5 790.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1345 797.5 0 103 18 -extract_basename_1 ",
		height=0.27778,
		label=extract_basename_1,
		pos="1345,800",
		rects="1285.5,790.5,1404.5,809.5",
		width=1.6528];
	input_fastq_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 1239.55 737.38 1250.13 744.93 1266.33 756.16 1281 765 1293.73 772.67 1308.34 780.5 1320.38 786.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1319.18 788.85 1326.53 789.85 1321.41 784.49 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1329 775.6 0 38 10 -input_file ",
		label=input_file,
		lp="1329,777.5",
		pos="e,1327.9,790.54 1239.5,737.38 1250.1,744.93 1266.3,756.16 1281,765 1293.7,772.67 1308.3,780.5 1320.4,786.71"];
	mark_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 662 305.5 662 324.5 760 324.5 760 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 711 312.5 0 82 15 -mark_duplicates ",
		height=0.27778,
		label=mark_duplicates,
		pos="711,315",
		rects="662,305.5,760,324.5",
		width=1.3611];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 744.45 718.51 729.7 710.01 711 695.41 711 676 711 676 711 676 711 359 711 350.31 711 340.63 711 332.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 713.45 332.76 711 325.76 708.55 332.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 742.5 515.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="742.5,517.5",
		pos="e,711,324.24 744.45,718.51 729.7,710.01 711,695.41 711,676 711,676 711,676 711,359 711,350.31 711,340.63 711,332.65"];
	execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1298 440.5 1298 459.5 1456 459.5 1456 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1377 447.5 0 142 27 -execute_pcr_bottleneck_coef ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=execute_pcr_bottleneck_coef,
		pos="1377,450",
		rects="1298,440.5,1456,459.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1349.77 718.6 1356.28 714.4 1363.37 708.77 1368 702 1374.76 692.12 1375 687.97 1375 676 1375 676 1375 676 1375 \
494 1375 485.3 1375.41 475.62 1375.86 467.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1378.3 467.89 1376.29 460.75 1373.41 467.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1404.5 583.1 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="1404.5,585",
		pos="e,1376.4,459.24 1349.8,718.6 1356.3,714.4 1363.4,708.77 1368,702 1374.8,692.12 1375,687.97 1375,676 1375,676 1375,676 1375,494 1375,\
485.3 1375.4,475.62 1375.9,467.65"];
	remove_encode_blacklist	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 823.5 440.5 823.5 459.5 964.5 459.5 964.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 894 447.5 0 125 23 -remove_encode_blacklist ",
		height=0.27778,
		label=remove_encode_blacklist,
		pos="894,450",
		rects="823.5,440.5,964.5,459.5",
		width=1.9583];
	ENCODE_blacklist_bedfile -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 10 885.31 718.72 886.8 708.65 889 691.12 889 676 889 676 889 676 889 494 889 485.25 890.03 475.56 891.16 467.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 893.58 468 892.24 460.71 888.74 467.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 892 583.1 0 6 1 -b ",
		label=b,
		lp="892,585",
		pos="e,892.47,459.21 885.31,718.72 886.8,708.65 889,691.12 889,676 889,676 889,676 889,494 889,485.25 890.03,475.56 891.16,467.6"];
	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 10 662 718.7 662 708.6 662 691.05 662 676 662 676 662 676 662 359 662 345.82 672.14 335.73 683.2 328.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 684.36 330.81 689.19 325.18 681.91 326.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 682 515.6 0 40 9 -java_opts ",
		label=java_opts,
		lp="682,517.5",
		pos="e,690.5,324.43 662,718.7 662,708.6 662,691.05 662,676 662,676 662,676 662,359 662,345.82 672.14,335.73 683.2,328.65"];
	sort_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1125 575.5 1125 594.5 1193 594.5 1193 575.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1159 582.5 0 52 9 -sort_bams ",
		height=0.27778,
		label=sort_bams,
		pos="1159,585",
		rects="1125,575.5,1193,594.5",
		width=0.94444];
	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 997.25 718.81 1001.53 714.19 1006.57 708.13 1010 702 1022.35 679.92 1011.22 666.93 1028 648 1051.42 621.58 1088.52 \
605.5 1117.27 596.36 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1117.71 598.78 1123.69 594.4 1116.28 594.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1046.5 650.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="1046.5,652.5",
		pos="e,1125.1,593.96 997.25,718.81 1001.5,714.19 1006.6,708.13 1010,702 1022.4,679.92 1011.2,666.93 1028,648 1051.4,621.58 1088.5,605.5 \
1117.3,596.36"];
	nthreads -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 1002.71 718.53 1008.72 715.25 1015.98 711.85 1023 710 1087.98 692.83 1109.46 720.74 1174 702 1181.84 699.72 1182.71 \
696.67 1190 693 1193.36 691.31 1196.92 689.6 1200.47 687.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1201.38 690.24 1206.74 685.11 1199.35 685.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1208.5 695.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="1208.5,697.5",
		pos="e,1208.1,684.48 1002.7,718.53 1008.7,715.25 1016,711.85 1023,710 1088,692.83 1109.5,720.74 1174,702 1181.8,699.72 1182.7,696.67 \
1190,693 1193.4,691.31 1196.9,689.6 1200.5,687.96"];
	sort_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 644 260.5 644 279.5 782 279.5 782 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 713 267.5 0 122 21 -sort_dups_marked_bams ",
		height=0.27778,
		label=sort_dups_marked_bams,
		pos="713,270",
		rects="644,260.5,782,279.5",
		width=1.9167];
	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 10 984.35 718.62 979.32 708.74 972 691.68 972 676 972 676 972 676 972 314 972 295.36 866.3 282.99 789.95 276.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 790.42 274.06 783.24 275.92 790.01 278.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 990.5 493.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="990.5,495",
		pos="e,781.73,275.79 984.35,718.62 979.32,708.74 972,691.68 972,676 972,676 972,676 972,314 972,295.36 866.3,282.99 789.95,276.48"];
	filtered2sorted	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1078 485.5 1078 504.5 1166 504.5 1166 485.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1122 492.5 0 72 15 -filtered2sorted ",
		height=0.27778,
		label=filtered2sorted,
		pos="1122,495",
		rects="1078,485.5,1166,504.5",
		width=1.2222];
	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 991.32 718.58 998.53 693.13 1021.18 617.82 1041 603 1060.08 588.74 1076.4 611.06 1094 595 1115.98 574.95 1101.48 \
558.51 1110 530 1111.74 524.17 1113.89 517.88 1115.88 512.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1118.18 513.15 1118.29 505.73 1113.58 511.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1059.5 605.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="1059.5,607.5",
		pos="e,1118.8,504.31 991.32,718.58 998.53,693.13 1021.2,617.82 1041,603 1060.1,588.74 1076.4,611.06 1094,595 1116,574.95 1101.5,558.51 \
1110,530 1111.7,524.17 1113.9,517.88 1115.9,512.3"];
	sort_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 718.5 395.5 718.5 414.5 829.5 414.5 829.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 774 402.5 0 95 16 -sort_masked_bams ",
		height=0.27778,
		label=sort_masked_bams,
		pos="774,405",
		rects="718.5,395.5,829.5,414.5",
		width=1.5417];
	nthreads -> sort_masked_bams	[_draw_="c 7 -#000000 B 13 974.59 718.53 968.94 715.49 962.31 712.26 956 710 922.4 697.94 799 711.7 799 676 799 676 799 676 799 449 799 438.69 \
793.56 428.64 787.75 420.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 789.75 419.43 783.42 415.56 785.96 422.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 817.5 560.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="817.5,562.5",
		pos="e,782.46,414.39 974.59,718.53 968.94,715.49 962.31,712.26 956,710 922.4,697.94 799,711.7 799,676 799,676 799,676 799,449 799,438.69 \
793.56,428.64 787.75,420.85"];
	sort_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 696.5 125.5 696.5 144.5 799.5 144.5 799.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 748 132.5 0 87 15 -sort_dedup_bams ",
		height=0.27778,
		label=sort_dedup_bams,
		pos="748,135",
		rects="696.5,125.5,799.5,144.5",
		width=1.4306];
	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 16 989.79 718.71 990.68 708.62 992 691.08 992 676 992 676 992 676 992 606.5 992 546.43 1016 533.57 1016 473.5 1016 \
473.5 1016 473.5 1016 179 1016 158.06 886.76 145.47 807.78 139.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 808.02 137.29 800.87 139.23 807.67 142.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1034.5 425.6 0 37 8 -nthreads ",
		label=nthreads,
		lp="1034.5,427.5",
		pos="e,799.36,139.12 989.79,718.71 990.68,708.62 992,691.08 992,676 992,676 992,676 992,606.5 992,546.43 1016,533.57 1016,473.5 1016,\
473.5 1016,473.5 1016,179 1016,158.06 886.76,145.47 807.78,139.72"];
	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1126.5 620.5 1126.5 639.5 1191.5 639.5 1191.5 620.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1159 627.5 0 49 7 -sam2bam ",
		height=0.27778,
		label=sam2bam,
		pos="1159,630",
		rects="1126.5,620.5,1191.5,639.5",
		width=0.90278];
	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 4 1003.79 718.65 1033.8 701.7 1102 663.19 1137.15 643.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1137.92 645.72 1142.81 640.14 1135.51 641.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1114.5 673.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="1114.5,675",
		pos="e,1144.1,639.4 1003.8,718.65 1033.8,701.7 1102,663.19 1137.2,643.34"];
	genome_ref_first_index_file -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 1081.51 718.51 1069.83 711.73 1057.96 701.92 1066 693 1068.03 690.75 1140.2 683.87 1187.52 679.58 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1187.5 682.05 1194.25 678.98 1187.06 677.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1121.5 695.6 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="1121.5,697.5",
		pos="e,1195.8,678.84 1081.5,718.51 1069.8,711.73 1058,701.92 1066,693 1068,690.75 1140.2,683.87 1187.5,679.58"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 693 170.5 693 189.5 803 189.5 803 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 748 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="748,180",
		rects="693,170.5,803,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 748 170.71 748 165.59 748 158.85 748 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 750.45 152.78 748 145.78 745.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 767 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="767,157.5",
		pos="e,748,144.27 748,170.71 748,165.59 748,158.85 748,152.67"];
	index_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 718.5 350.5 718.5 369.5 837.5 369.5 837.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 778 357.5 0 103 17 -index_masked_bams ",
		height=0.27778,
		label=index_masked_bams,
		pos="778,360",
		rects="718.5,350.5,837.5,369.5",
		width=1.6528];
	index_masked_bams -> mark_duplicates	[_draw_="c 7 -#000000 B 4 764.76 350.5 755.22 344.38 742.16 336 731.3 329.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 732.7 327.01 725.48 325.3 730.05 331.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 769 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="769,337.5",
		pos="e,724.21,324.48 764.76,350.5 755.22,344.38 742.16,336 731.3,329.03"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1111.5 530.5 1111.5 549.5 1206.5 549.5 1206.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1159 537.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1159,540",
		rects="1111.5,530.5,1206.5,549.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 1159 575.71 1159 570.59 1159 563.85 1159 557.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1161.45 557.78 1159 550.78 1156.55 557.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1178 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="1178,562.5",
		pos="e,1159,549.27 1159,575.71 1159,570.59 1159,563.85 1159,557.67"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1056 170.5 1056 189.5 1132 189.5 1132 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1094 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="1094,180",
		rects="1056,170.5,1132,189.5",
		width=1.0556];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 10 1184.38 575.5 1199.2 568.76 1215 557.67 1215 541 1215 541 1215 541 1215 336.5 1215 271.67 1148.68 217.61 1114.24 \
193.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1115.84 192.02 1108.67 190.15 1113.11 196.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1234 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1234,382.5",
		pos="e,1107.4,189.31 1184.4,575.5 1199.2,568.76 1215,557.67 1215,541 1215,541 1215,541 1215,336.5 1215,271.67 1148.7,217.61 1114.2,193.9"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 662.19 314.63 540.62 315.56 234 313.67 234 271 234 271 234 271 234 89 234 74.47 202.45 63.54 171.7 56.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 172.34 53.97 164.98 54.82 171.27 58.75 ",
		pos="e,163.5,54.489 662.19,314.63 540.62,315.56 234,313.67 234,271 234,271 234,271 234,89 234,74.475 202.45,63.54 171.7,56.332"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 711.39 305.71 711.62 300.59 711.94 293.85 712.22 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 714.67 287.88 712.55 280.78 709.77 287.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 731 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="731,292.5",
		pos="e,712.62,279.27 711.39,305.71 711.62,300.59 711.94,293.85 712.22,287.67"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1023 440.5 1023 459.5 1133 459.5 1133 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1078 447.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="1078,450",
		rects="1023,440.5,1133,459.5",
		width=1.5278];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 16 1243.73 665.65 1255.3 658.25 1269 646.27 1269 631 1269 631 1269 631 1269 224 1269 158.24 1253.76 123.59 1303 80 \
1328.92 57.06 1345.51 71.73 1379 63 1386.27 61.11 1394 58.92 1401.35 56.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1401.68 59.21 1407.69 54.86 1400.28 54.52 ",
		pos="e,1409.1,54.43 1243.7,665.65 1255.3,658.25 1269,646.27 1269,631 1269,631 1269,631 1269,224 1269,158.24 1253.8,123.59 1303,80 1328.9,\
57.057 1345.5,71.729 1379,63 1386.3,61.107 1394,58.917 1401.4,56.753"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1304.5 80.5 1304.5 99.5 1425.5 99.5 1425.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1365 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="1365,90",
		rects="1304.5,80.5,1425.5,99.5",
		width=1.6806];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 1258.76 665.51 1274.75 659.03 1291 648.22 1291 631 1291 631 1291 631 1291 134 1291 118.82 1302.79 108.9 1316.96 \
102.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1317.56 104.87 1323.13 99.98 1315.72 100.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1313.5 380.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="1313.5,382.5",
		pos="e,1324.5,99.416 1258.8,665.51 1274.8,659.03 1291,648.22 1291,631 1291,631 1291,631 1291,134 1291,118.82 1302.8,108.9 1317,102.47"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 1214.37 665.5 1204.44 659.32 1190.83 650.84 1179.59 643.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1181.13 641.9 1173.89 640.28 1178.53 646.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1218 650.6 0 38 10 -input_file ",
		label=input_file,
		lp="1218,652.5",
		pos="e,1172.6,639.48 1214.4,665.5 1204.4,659.32 1190.8,650.84 1179.6,643.83"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 640 215.5 640 234.5 786 234.5 786 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 713 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="713,225",
		rects="640,215.5,786,234.5",
		width=2.0278];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 713 260.71 713 255.59 713 248.85 713 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 715.45 242.78 713 235.78 710.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 732 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="732,247.5",
		pos="e,713,234.27 713,260.71 713,255.59 713,248.85 713,242.67"];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1108.74 485.67 1105.09 483.1 1101.24 480.11 1098 477 1094.6 473.73 1091.3 469.85 1088.4 466.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1090.39 464.67 1084.28 460.47 1086.43 467.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1117 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="1117,472.5",
		pos="e,1083.4,459.24 1108.7,485.67 1105.1,483.1 1101.2,480.11 1098,477 1094.6,473.73 1091.3,469.85 1088.4,466.1"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 4 1078.04 485.71 1040.71 478.67 987.02 468.54 947.26 461.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 947.81 458.66 940.48 459.77 946.91 463.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1031 470.6 0 6 1 -a ",
		label=a,
		lp="1031,472.5",
		pos="e,938.99,459.49 1078,485.71 1040.7,478.67 987.02,468.54 947.26,461.04"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1114.5 125.5 1114.5 144.5 1203.5 144.5 1203.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1159 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1159,135",
		rects="1114.5,125.5,1203.5,144.5",
		width=1.2361];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 1128.14 485.65 1129.89 482.98 1131.69 479.95 1133 477 1137.86 466.07 1140 462.97 1140 451 1140 451 1140 451 1140 \
336.5 1140 267.81 1151.19 186.48 1156.39 152.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1158.75 153.17 1157.4 145.87 1153.9 152.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1174 313.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1174,315",
		pos="e,1157.6,144.38 1128.1,485.65 1129.9,482.98 1131.7,479.95 1133,477 1137.9,466.07 1140,462.97 1140,451 1140,451 1140,451 1140,336.5 \
1140,267.81 1151.2,186.48 1156.4,152.35"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 4 1165.84 486.61 1208.02 479.5 1272.07 468.69 1318.57 460.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1318.76 463.31 1325.25 459.73 1317.94 458.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1304 470.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1304,472.5",
		pos="e,1326.7,459.47 1165.8,486.61 1208,479.5 1272.1,468.69 1318.6,460.85"];
	sort_masked_bams -> index_masked_bams	[_draw_="c 7 -#000000 B 4 774.77 395.71 775.25 390.59 775.87 383.85 776.45 377.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 778.88 377.97 777.09 370.77 774 377.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 795 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="795,382.5",
		pos="e,777.23,369.27 774.77,395.71 775.25,390.59 775.87,383.85 776.45,377.67"];
	masked_file_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 833.5 395.5 833.5 414.5 964.5 414.5 964.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 899 402.5 0 115 20 -masked_file_basename ",
		height=0.27778,
		label=masked_file_basename,
		pos="899,405",
		rects="833.5,395.5,964.5,414.5",
		width=1.8194];
	masked_file_basename -> mark_duplicates	[_draw_="c 7 -#000000 B 7 891.84 395.5 881.51 383.74 861.31 362.53 840 350 818.12 337.14 791.34 329.06 767.86 324.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 768.53 321.66 761.18 322.67 767.56 326.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 899.5 358.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="899.5,360",
		pos="e,759.7,322.36 891.84,395.5 881.51,383.74 861.31,362.53 840,350 818.12,337.14 791.34,329.06 767.86,324.02"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 694.5 80.5 694.5 99.5 805.5 99.5 805.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 750 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="750,90",
		rects="694.5,80.5,805.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 748.39 125.71 748.62 120.59 748.94 113.85 749.22 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 751.67 107.88 749.55 100.78 746.77 107.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 768 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="768,112.5",
		pos="e,749.62,99.265 748.39,125.71 748.62,120.59 748.94,113.85 749.22,107.67"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 514.5 80.5 514.5 99.5 675.5 99.5 675.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 595 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="595,90",
		rects="514.5,80.5,675.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 7 717.59 125.55 707.82 122.83 696.95 119.79 687 117 669.15 111.99 649.35 106.4 632.72 101.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 633.68 99.42 626.28 99.87 632.35 104.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="717,112.5",
		pos="e,624.82,99.458 717.59,125.55 707.82,122.83 696.95,119.79 687,117 669.15,111.99 649.35,106.4 632.72,101.69"];
	remove_encode_blacklist -> sort_masked_bams	[_draw_="c 7 -#000000 B 4 870.29 440.5 851.72 433.85 825.72 424.53 805.41 417.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 806.5 415.04 799.08 414.99 804.85 419.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 863 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="863,427.5",
		pos="e,797.66,414.48 870.29,440.5 851.72,433.85 825.72,424.53 805.41,417.26"];
	remove_encode_blacklist -> masked_file_basename	[_draw_="c 7 -#000000 B 4 894.96 440.71 895.56 435.59 896.34 428.85 897.06 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 899.49 423 897.86 415.77 894.62 422.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 915 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="915,427.5",
		pos="e,898.04,414.27 894.96,440.71 895.56,435.59 896.34,428.85 897.06,422.67"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 750 80.71 750 75.59 750 68.85 750 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 752.45 62.78 750 55.78 747.55 62.78 ",
		pos="e,750,54.265 750,80.709 750,75.593 750,68.848 750,62.666"];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 925 80.5 925 99.5 1083 99.5 1083 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1004 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="1004,90",
		rects="925,80.5,1083,99.5",
		width=2.1944];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 993.53 80.5 986.27 74.62 976.44 66.64 968.06 59.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 969.6 57.94 962.62 55.43 966.52 61.74 ",
		pos="e,961.45,54.478 993.53,80.505 986.27,74.615 976.44,66.64 968.06,59.841"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1404.5 718.5 1404.5 737.5 1523.5 737.5 1523.5 718.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1464 725.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1464,728",
		rects="1404.5,718.5,1523.5,737.5",
		width=1.6528];
	extract_basename_2 -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 1434.85 718.58 1423.17 715.48 1409.53 712.19 1397 710 1360.93 703.7 1350.61 710.53 1315 702 1304.33 699.44 1302.43 \
696.41 1292 693 1284.38 690.51 1276.16 688.11 1268.23 685.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1269.3 683.69 1261.9 684.25 1268.03 688.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1348.5 695.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1348.5,697.5",
		pos="e,1260.4,683.85 1434.9,718.58 1423.2,715.48 1409.5,712.19 1397,710 1360.9,703.7 1350.6,710.53 1315,702 1304.3,699.44 1302.4,696.41 \
1292,693 1284.4,690.51 1276.2,688.11 1268.2,685.94"];
	extract_basename_2 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 22 1436.23 718.55 1424.27 715.28 1410.07 711.87 1397 710 1348.57 703.06 1223.68 716.64 1177 702 1169.94 699.79 1169.99 \
695.41 1163 693 1144.64 686.68 1090.63 697.76 1076 685 1047.81 660.41 1082.35 630.52 1057 603 1049.1 594.42 1041.9 601.18 1032 595 \
975.11 559.48 925.31 495.27 904.44 466.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 906.46 464.74 900.42 460.43 902.45 467.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1077.5 583.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="1077.5,585",
		pos="e,899.55,459.2 1436.2,718.55 1424.3,715.28 1410.1,711.87 1397,710 1348.6,703.06 1223.7,716.64 1177,702 1169.9,699.79 1170,695.41 \
1163,693 1144.6,686.68 1090.6,697.76 1076,685 1047.8,660.41 1082.3,630.52 1057,603 1049.1,594.42 1041.9,601.18 1032,595 975.11,559.48 \
925.31,495.27 904.44,466.13"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 1456.68 718.78 1442.72 703.44 1410.81 670 1379 648 1316.36 604.67 1233.52 569.54 1189.52 552.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1190.59 550.17 1183.18 549.94 1188.83 554.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1399.5 628.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1399.5,630",
		pos="e,1181.8,549.39 1456.7,718.78 1442.7,703.44 1410.8,670 1379,648 1316.4,604.67 1233.5,569.54 1189.5,552.38"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 1463.47 718.7 1462.88 708.61 1462 691.06 1462 676 1462 676 1462 676 1462 561.5 1462 439.74 1512.19 390.2 1446 \
288 1391.59 203.98 1274.62 163.39 1208.02 146.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.01 144.13 1201.63 144.82 1207.83 148.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1523.5 425.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1523.5,427.5",
		pos="e,1200.2,144.45 1463.5,718.7 1462.9,708.61 1462,691.06 1462,676 1462,676 1462,676 1462,561.5 1462,439.74 1512.2,390.2 1446,288 1391.6,\
203.98 1274.6,163.39 1208,146.41"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1466.36 718.78 1469.03 708.76 1473 691.28 1473 676 1473 676 1473 676 1473 584 1473 531.76 1423.7 486.09 1395.76 \
464.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1397.43 462.59 1390.37 460.33 1394.47 466.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1521.5 583.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1521.5,585",
		pos="e,1389.2,459.42 1466.4,718.78 1469,708.76 1473,691.28 1473,676 1473,676 1473,676 1473,584 1473,531.76 1423.7,486.09 1395.8,464.4"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1151.87 530.71 1146.95 525 1140.29 517.26 1134.51 510.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1136.52 509.12 1130.1 505.41 1132.81 512.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1162 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="1162,517.5",
		pos="e,1129.1,504.27 1151.9,530.71 1147,525 1140.3,517.26 1134.5,510.54"];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 10 1396.48 80.59 1409.3 77.33 1424.3 73.74 1438 71 1460.93 66.42 1467 67.21 1490 63 1501.02 60.98 1512.84 58.6 1523.93 \
56.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1524.43 58.66 1530.76 54.8 1523.4 53.86 ",
		pos="e,1532.2,54.484 1396.5,80.586 1409.3,77.33 1424.3,73.736 1438,71 1460.9,66.419 1467,67.21 1490,63 1501,60.983 1512.8,58.595 1523.9,\
56.256"];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 640.35 220.05 555.91 214.46 428 202.45 428 181 428 181 428 181 428 89 428 73.74 417.7 63.86 403.88 57.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.18 55.37 397.77 55.02 403.35 59.91 ",
		pos="e,396.37,54.459 640.35,220.05 555.91,214.46 428,202.45 428,181 428,181 428,181 428,89 428,73.738 417.7,63.864 403.88,57.486"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 719.75 215.71 724.4 210 730.7 202.26 736.17 195.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 737.8 197.41 740.32 190.44 734 194.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 752 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="752,202.5",
		pos="e,741.27,189.27 719.75,215.71 724.4,210 730.7,202.26 736.17,195.54"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1012.5 125.5 1012.5 144.5 1095.5 144.5 1095.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1054 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="1054,135",
		rects="1012.5,125.5,1095.5,144.5",
		width=1.1528];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1044.36 125.71 1037.44 119.76 1027.96 111.61 1019.93 104.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1021.66 102.96 1014.76 100.25 1018.47 106.67 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1049.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="1049.5,112.5",
		pos="e,1013.6,99.265 1044.4,125.71 1037.4,119.76 1028,111.61 1019.9,104.7"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1153 80.5 1153 99.5 1265 99.5 1265 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1209 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1209,90",
		rects="1153,80.5,1265,99.5",
		width=1.5556];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 1225.99 80.5 1238.71 74.14 1256.3 65.35 1270.53 58.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1271.53 60.48 1276.69 55.15 1269.33 56.09 ",
		pos="e,1278,54.478 1226,80.505 1238.7,74.144 1256.3,65.351 1270.5,58.233"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 4 1156.22 125.56 1151.42 111 1141.51 80.93 1135.34 62.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1137.72 61.6 1133.2 55.72 1133.07 63.14 ",
		pos="e,1132.7,54.284 1156.2,125.56 1151.4,111 1141.5,80.933 1135.3,62.216"];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1165.31 125.72 1169.65 120.31 1175.75 113.31 1182 108 1183.59 106.65 1185.29 105.33 1187.05 104.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1188.2 106.24 1192.64 100.3 1185.46 102.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1229 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1229,112.5",
		pos="e,1193.9,99.453 1165.3,125.72 1169.7,120.31 1175.8,113.31 1182,108 1183.6,106.65 1185.3,105.33 1187,104.06"];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 4 1359.12 790.7 1379.78 778.54 1418.43 755.8 1442.6 741.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1443.8 743.72 1448.6 738.06 1441.32 739.5 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1404 775.6 0 36 9 -file_path ",
		label=file_path,
		lp="1404,777.5",
		pos="e,1449.9,737.29 1359.1,790.7 1379.8,778.54 1418.4,755.8 1442.6,741.59"];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 1086.29 170.71 1080.86 164.88 1073.47 156.93 1067.13 150.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1069.28 148.83 1062.72 145.37 1065.69 152.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1086.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1086.5,157.5",
		pos="e,1061.7,144.27 1086.3,170.71 1080.9,164.88 1073.5,156.93 1067.1,150.12"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 4 1159 620.71 1159 615.59 1159 608.85 1159 602.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1161.45 602.78 1159 595.78 1156.55 602.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1178 605.6 0 38 10 -input_file ",
		label=input_file,
		lp="1178,607.5",
		pos="e,1159,594.27 1159,620.71 1159,615.59 1159,608.85 1159,602.67"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1409.12 440.64 1425.5 434.24 1442 423.45 1442 406 1442 406 1442 406 1442 89 1442 66.15 1623.71 68.02 1646 63 1652.99 \
61.43 1660.38 59.3 1667.33 57.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1667.91 59.48 1673.79 54.96 1666.37 54.83 ",
		pos="e,1675.2,54.481 1409.1,440.64 1425.5,434.24 1442,423.45 1442,406 1442,406 1442,406 1442,89 1442,66.15 1623.7,68.017 1646,63 1653,\
61.426 1660.4,59.303 1667.3,57.091"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 586.32 80.71 580.22 74.88 571.91 66.93 564.77 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 566.5 58.38 559.74 55.31 563.11 61.92 ",
		pos="e,558.65,54.265 586.32,80.709 580.22,74.879 571.91,66.934 564.77,60.117"];
}