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	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 10 793.39 718.68 780.8 709.82 764 694.53 764 676 764 676 764 676 764 359 764 350.31 764 340.63 764 332.65 ",
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	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 702.9 718.56 698.46 708.62 692 691.51 692 676 692 676 692 676 692 359 692 343.87 703.86 333.94 717.95 327.48 ",
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		width=0.90278];
	genome_ref_first_index_file -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 1240.58 718.81 1236.81 714.2 1232.51 708.14 1230 702 1228.82 699.12 1227.99 695.94 1227.4 692.81 ",
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 1040.39 718.51 1051.54 690.62 1086.39 603.48 1087 603 1107.52 587 1125.67 612.42 1145 595 1167.11 575.09 1152.48 \
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	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 16 1038.58 718.73 1040.35 708.67 1043 691.16 1043 676 1043 676 1043 676 1043 606.5 1043 546.27 1069 533.73 1069 473.5 \
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 10 1047.1 718.64 1051.93 714.16 1057.43 708.27 1061 702 1073.33 680.36 1059.87 666.98 1076 648 1099.59 620.23 1138.29 \
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	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 10 1033.85 718.84 1030.29 708.88 1025 691.46 1025 676 1025 676 1025 676 1025 314 1025 295.2 918.17 282.85 841.2 276.4 ",
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	nthreads -> sort_masked_bams	[_draw_="c 7 -#000000 B 13 1022.59 718.51 1016.94 715.47 1010.31 712.25 1004 710 969.55 697.74 843 712.57 843 676 843 676 843 676 843 449 \
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	sam2bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1177.5 620.5 1177.5 639.5 1242.5 639.5 1242.5 620.5 ",
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		width=0.90278];
	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 7 1049.86 718.74 1063.18 710.2 1083.12 697.52 1091 693 1123.09 674.58 1161.16 655.15 1185.44 643.06 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1186.28 645.38 1191.46 640.07 1184.1 640.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1159.5 673.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="1159.5,675",
		pos="e,1192.8,639.4 1049.9,718.74 1063.2,710.2 1083.1,697.52 1091,693 1123.1,674.58 1161.2,655.15 1185.4,643.06"];
	execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1344 440.5 1344 459.5 1502 459.5 1502 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1423 447.5 0 142 27 -execute_pcr_bottleneck_coef ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=execute_pcr_bottleneck_coef,
		pos="1423,450",
		rects="1344,440.5,1502,459.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1396.52 718.64 1402.73 714.39 1409.56 708.7 1414 702 1420.61 692.02 1421 687.97 1421 676 1421 676 1421 676 1421 \
494 1421 485.3 1421.41 475.62 1421.86 467.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1424.3 467.89 1422.29 460.75 1419.41 467.58 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1450.5 583.1 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="1450.5,585",
		pos="e,1422.4,459.24 1396.5,718.64 1402.7,714.39 1409.6,708.7 1414,702 1420.6,692.02 1421,687.97 1421,676 1421,676 1421,676 1421,494 \
1421,485.3 1421.4,475.62 1421.9,467.65"];
	extract_basename_1	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1255.5 790.5 1255.5 809.5 1374.5 809.5 1374.5 790.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1315 797.5 0 103 18 -extract_basename_1 ",
		height=0.27778,
		label=extract_basename_1,
		pos="1315,800",
		rects="1255.5,790.5,1374.5,809.5",
		width=1.6528];
	input_fastq_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 1128.9 737.36 1139.08 745.56 1155.71 757.82 1172 765 1196.76 775.91 1225.54 783.61 1250.76 788.9 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1249.98 791.24 1257.33 790.23 1250.96 786.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1240 775.6 0 38 10 -input_file ",
		label=input_file,
		lp="1240,777.5",
		pos="e,1258.8,790.53 1128.9,737.36 1139.1,745.56 1155.7,757.82 1172,765 1196.8,775.91 1225.5,783.61 1250.8,788.9"];
	input_fastq_files -> "bowtie-se"	[_draw_="c 7 -#000000 B 7 1127.72 718.55 1136.12 710.86 1149.51 699.7 1163 693 1170.15 689.45 1178.15 686.56 1185.97 684.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1186.15 686.74 1192.24 682.52 1184.85 682.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1194.5 695.6 0 63 16 -input_fastq_file ",
		label=input_fastq_file,
		lp="1194.5,697.5",
		pos="e,1193.7,682.12 1127.7,718.55 1136.1,710.86 1149.5,699.7 1163,693 1170.2,689.45 1178.1,686.56 1186,684.25"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 4 1129.16 485.66 1092.13 478.61 1039 468.5 999.67 461.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1000.31 458.65 992.98 459.75 999.4 463.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1083 470.6 0 6 1 -a ",
		label=a,
		lp="1083,472.5",
		pos="e,991.49,459.47 1129.2,485.66 1092.1,478.61 1039,468.5 999.67,461.02"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1149.5 125.5 1149.5 144.5 1238.5 144.5 1238.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1194 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1194,135",
		rects="1149.5,125.5,1238.5,144.5",
		width=1.2361];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 1180.31 485.78 1182.38 483.12 1184.49 480.07 1186 477 1191.29 466.27 1193 462.97 1193 451 1193 451 1193 451 1193 \
246.5 1193 213.24 1193.46 174.36 1193.75 152.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1196.2 152.86 1193.85 145.83 1191.3 152.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1227 313.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1227,315",
		pos="e,1193.9,144.32 1180.3,485.78 1182.4,483.12 1184.5,480.07 1186,477 1191.3,466.27 1193,462.97 1193,451 1193,451 1193,451 1193,246.5 \
1193,213.24 1193.5,174.36 1193.8,152.72"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1076 440.5 1076 459.5 1186 459.5 1186 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1131 447.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="1131,450",
		rects="1076,440.5,1186,459.5",
		width=1.5278];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1160.89 485.53 1157.54 482.96 1154 480.01 1151 477 1147.67 473.66 1144.4 469.76 1141.5 466.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1143.48 464.57 1137.36 460.39 1139.54 467.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1170 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="1170,472.5",
		pos="e,1136.5,459.17 1160.9,485.53 1157.5,482.96 1154,480.01 1151,477 1147.7,473.66 1144.4,469.76 1141.5,466.01"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 4 1216.83 486.46 1258.1 479.36 1320.15 468.69 1365.4 460.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1365.67 463.35 1372.15 459.75 1364.83 458.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1352 470.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1352,472.5",
		pos="e,1373.6,459.49 1216.8,486.46 1258.1,479.36 1320.1,468.69 1365.4,460.91"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1138 80.5 1138 99.5 1250 99.5 1250 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1194 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1194,90",
		rects="1138,80.5,1250,99.5",
		width=1.5556];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 1214.15 80.5 1229.66 73.97 1251.26 64.86 1268.38 57.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1269 60.04 1274.5 55.07 1267.09 55.53 ",
		pos="e,1275.9,54.478 1214.2,80.505 1229.7,73.967 1251.3,64.861 1268.4,57.644"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 541.5 80.5 541.5 99.5 652.5 99.5 652.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 597 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="597,90",
		rects="541.5,80.5,652.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 722.98 125.5 698.04 118.67 662.85 109.03 636 101.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 636.81 99.36 629.41 99.88 635.52 104.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 708 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="708,112.5",
		pos="e,627.95,99.478 722.98,125.5 698.04,118.67 662.85,109.03 636,101.68"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 673.5 80.5 673.5 99.5 834.5 99.5 834.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 754 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="754,90",
		rects="673.5,80.5,834.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 754 125.71 754 120.59 754 113.85 754 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 756.45 107.78 754 100.78 751.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 784 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="784,112.5",
		pos="e,754,99.265 754,125.71 754,120.59 754,113.85 754,107.67"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1038.5 125.5 1038.5 144.5 1121.5 144.5 1121.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1080 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="1080,135",
		rects="1038.5,125.5,1121.5,144.5",
		width=1.1528];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 943 80.5 943 99.5 1101 99.5 1101 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1022 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="1022,90",
		rects="943,80.5,1101,99.5",
		width=2.1944];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1068.54 125.5 1060.44 119.5 1049.41 111.32 1040.12 104.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1041.73 102.58 1034.65 100.38 1038.82 106.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1072.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="1072.5,112.5",
		pos="e,1033.4,99.478 1068.5,125.5 1060.4,119.5 1049.4,111.32 1040.1,104.43"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1094 170.5 1094 189.5 1170 189.5 1170 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1132 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="1132,180",
		rects="1094,170.5,1170,189.5",
		width=1.0556];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 10 1236.62 575.6 1251.87 568.95 1268 557.92 1268 541 1268 541 1268 541 1268 336.5 1268 268.92 1194.31 216.57 1155.42 \
193.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1156.74 191.59 1149.45 190.22 1154.29 195.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1287 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1287,382.5",
		pos="e,1148.1,189.47 1236.6,575.6 1251.9,568.95 1268,557.92 1268,541 1268,541 1268,541 1268,336.5 1268,268.92 1194.3,216.57 1155.4,193.65"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1162.5 530.5 1162.5 549.5 1257.5 549.5 1257.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1210 537.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1210,540",
		rects="1162.5,530.5,1257.5,549.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 1210 575.71 1210 570.59 1210 563.85 1210 557.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1212.45 557.78 1210 550.78 1207.55 557.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1229 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="1229,562.5",
		pos="e,1210,549.27 1210,575.71 1210,570.59 1210,563.85 1210,557.67"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 715.28 312.79 579.04 309.07 204 296.54 204 271 204 271 204 271 204 89 204 73.66 193.23 63.79 179.14 57.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 180.33 55.28 172.92 54.98 178.53 59.83 ",
		pos="e,171.51,54.429 715.28,312.79 579.04,309.07 204,296.54 204,271 204,271 204,271 204,89 204,73.664 193.23,63.792 179.14,57.44"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 764 305.71 764 300.59 764 293.85 764 287.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 766.45 287.78 764 280.78 761.55 287.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 783 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="783,292.5",
		pos="e,764,279.27 764,305.71 764,300.59 764,293.85 764,287.67"];
	masked_file_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 886.5 395.5 886.5 414.5 1017.5 414.5 1017.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 952 402.5 0 115 20 -masked_file_basename ",
		height=0.27778,
		label=masked_file_basename,
		pos="952,405",
		rects="886.5,395.5,1017.5,414.5",
		width=1.8194];
	remove_encode_blacklist -> masked_file_basename	[_draw_="c 7 -#000000 B 4 947.96 440.71 948.56 435.59 949.34 428.85 950.06 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.49 423 950.86 415.77 947.62 422.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 968 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="968,427.5",
		pos="e,951.04,414.27 947.96,440.71 948.56,435.59 949.34,428.85 950.06,422.67"];
	remove_encode_blacklist -> sort_masked_bams	[_draw_="c 7 -#000000 B 4 923.29 440.5 904.72 433.85 878.72 424.53 858.41 417.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 859.5 415.04 852.08 414.99 857.85 419.66 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 916 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="916,427.5",
		pos="e,850.66,414.48 923.29,440.5 904.72,433.85 878.72,424.53 858.41,417.26"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 681 215.5 681 234.5 827 234.5 827 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 754 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="754,225",
		rects="681,215.5,827,234.5",
		width=2.0278];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 762.07 260.71 760.85 255.47 759.24 248.53 757.78 242.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 760.24 242 756.27 235.74 755.46 243.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 778 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="778,247.5",
		pos="e,755.92,234.27 762.07,260.71 760.85,255.47 759.24,248.53 757.78,242.24"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 699 170.5 699 189.5 809 189.5 809 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 754 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="754,180",
		rects="699,170.5,809,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 754 170.71 754 165.59 754 158.85 754 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 756.45 152.78 754 145.78 751.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 773 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="773,157.5",
		pos="e,754,144.27 754,170.71 754,165.59 754,158.85 754,152.67"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1452.5 718.5 1452.5 737.5 1571.5 737.5 1571.5 718.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1512 725.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1512,728",
		rects="1452.5,718.5,1571.5,737.5",
		width=1.6528];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 1357.67 790.53 1383.44 784.75 1416.67 776.13 1445 765 1461.23 758.62 1478.55 749.24 1491.51 741.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1492.54 743.9 1497.3 738.21 1490.03 739.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1438 775.6 0 36 9 -file_path ",
		label=file_path,
		lp="1438,777.5",
		pos="e,1498.6,737.43 1357.7,790.53 1383.4,784.75 1416.7,776.13 1445,765 1461.2,758.62 1478.5,749.24 1491.5,741.66"];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 1121.73 170.5 1114.6 164.62 1104.96 156.64 1096.74 149.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1098.37 148.02 1091.42 145.44 1095.25 151.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1119.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="1119.5,157.5",
		pos="e,1090.3,144.48 1121.7,170.5 1114.6,164.62 1105,156.64 1096.7,149.84"];
	masked_file_basename -> mark_duplicates	[_draw_="c 7 -#000000 B 7 944.84 395.5 934.51 383.74 914.31 362.53 893 350 871.12 337.14 844.34 329.06 820.86 324.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 821.53 321.66 814.18 322.67 820.56 326.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 952.5 358.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="952.5,360",
		pos="e,812.7,322.36 944.84,395.5 934.51,383.74 914.31,362.53 893,350 871.12,337.14 844.34,329.06 820.86,324.02"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 588.71 80.71 582.88 74.88 574.93 66.93 568.12 60.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 570.02 58.55 563.34 55.34 566.55 62.02 ",
		pos="e,562.27,54.265 588.71,80.709 582.88,74.879 574.93,66.934 568.12,60.117"];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 681.24 221.51 585.17 217.24 428 206.37 428 181 428 181 428 181 428 89 428 73.74 417.7 63.86 403.88 57.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 405.18 55.37 397.77 55.02 403.35 59.91 ",
		pos="e,396.37,54.459 681.24,221.51 585.17,217.24 428,206.37 428,181 428,181 428,181 428,89 428,73.738 417.7,63.864 403.88,57.486"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 754 215.71 754 210.59 754 203.85 754 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 756.45 197.78 754 190.78 751.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 773 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="773,202.5",
		pos="e,754,189.27 754,215.71 754,210.59 754,203.85 754,197.67"];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 7 1170.82 125.63 1159.07 120.17 1145.69 111.82 1138 100 1130.84 89 1129.39 74.04 1129.56 62.66 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1131.99 63.06 1129.89 55.95 1127.1 62.82 ",
		pos="e,1130,54.439 1170.8,125.63 1159.1,120.17 1145.7,111.82 1138,100 1130.8,88.997 1129.4,74.041 1129.6,62.658"];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 4 1194 125.71 1194 120.59 1194 113.85 1194 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1196.45 107.78 1194 100.78 1191.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1241 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1241,112.5",
		pos="e,1194,99.265 1194,125.71 1194,120.59 1194,113.85 1194,107.67"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1202.87 530.71 1197.95 525 1191.29 517.26 1185.51 510.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1187.52 509.12 1181.1 505.41 1183.81 512.32 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1213 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="1213,517.5",
		pos="e,1180.1,504.27 1202.9,530.71 1198,525 1191.3,517.26 1185.5,510.54"];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 1008.17 80.5 998.1 74.32 984.29 65.84 972.89 58.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 974.34 56.85 967.09 55.27 971.77 61.02 ",
		pos="e,965.8,54.478 1008.2,80.505 998.1,74.321 984.29,65.838 972.89,58.83"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1436.78 440.59 1447.3 433 1460 420.77 1460 406 1460 406 1460 406 1460 89 1460 46.82 1606.9 72.48 1648 63 1654.98 \
61.39 1662.37 59.25 1669.31 57.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1669.89 59.42 1675.77 54.9 1668.36 54.77 ",
		pos="e,1677.2,54.427 1436.8,440.59 1447.3,433 1460,420.77 1460,406 1460,406 1460,406 1460,89 1460,46.825 1606.9,72.479 1648,63 1655,61.389 \
1662.4,59.25 1669.3,57.035"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 754 80.71 754 75.59 754 68.85 754 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 756.45 62.78 754 55.78 751.55 62.78 ",
		pos="e,754,54.265 754,80.709 754,75.593 754,68.848 754,62.666"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1254.5 80.5 1254.5 99.5 1375.5 99.5 1375.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1315 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="1315,90",
		rects="1254.5,80.5,1375.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 1343.65 80.5 1366.49 73.73 1398.62 64.2 1423.34 56.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1423.95 59.25 1429.96 54.91 1422.55 54.55 ",
		pos="e,1431.4,54.478 1343.6,80.505 1366.5,73.732 1398.6,64.201 1423.3,56.872"];
	"bowtie-se" -> output_bowtie_log	[_draw_="c 7 -#000000 B 19 1258.4 674.48 1291.17 673.06 1337 665 1337 631 1337 631 1337 631 1337 471.5 1337 432.46 1349.27 424.24 1361 387 \
1403.92 250.77 1363.59 188.91 1456 80 1473.26 59.65 1528.95 64.7 1537 63 1544.96 61.32 1553.41 59.06 1561.31 56.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1561.53 59.24 1567.53 54.87 1560.12 54.55 ",
		pos="e,1569,54.428 1258.4,674.48 1291.2,673.06 1337,665 1337,631 1337,631 1337,631 1337,471.5 1337,432.46 1349.3,424.24 1361,387 1403.9,\
250.77 1363.6,188.91 1456,80 1473.3,59.653 1529,64.699 1537,63 1545,61.32 1553.4,59.065 1561.3,56.748"];
	"bowtie-se" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 1258.38 671.35 1283.83 667.28 1315 657 1315 631 1315 631 1315 631 1315 134 1315 125.31 1315 115.63 1315 107.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1317.45 107.76 1315 100.76 1312.55 107.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1337.5 380.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="1337.5,382.5",
		pos="e,1315,99.243 1258.4,671.35 1283.8,667.28 1315,657 1315,631 1315,631 1315,631 1315,134 1315,125.31 1315,115.63 1315,107.65"];
	"bowtie-se" -> sam2bam	[_draw_="c 7 -#000000 B 4 1222.92 665.71 1220.97 660.47 1218.38 653.53 1216.04 647.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1218.34 646.39 1213.6 640.68 1213.75 648.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1238 650.6 0 38 10 -input_file ",
		label=input_file,
		lp="1238,652.5",
		pos="e,1213.1,639.27 1222.9,665.71 1221,660.47 1218.4,653.53 1216,647.24"];
	index_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 771.5 350.5 771.5 369.5 890.5 369.5 890.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 831 357.5 0 103 17 -index_masked_bams ",
		height=0.27778,
		label=index_masked_bams,
		pos="831,360",
		rects="771.5,350.5,890.5,369.5",
		width=1.6528];
	sort_masked_bams -> index_masked_bams	[_draw_="c 7 -#000000 B 4 827.77 395.71 828.25 390.59 828.87 383.85 829.45 377.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 831.88 377.97 830.09 370.77 827 377.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 848 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="848,382.5",
		pos="e,830.23,369.27 827.77,395.71 828.25,390.59 828.87,383.85 829.45,377.67"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 4 1210 620.71 1210 615.59 1210 608.85 1210 602.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1212.45 602.78 1210 595.78 1207.55 602.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1229 605.6 0 38 10 -input_file ",
		label=input_file,
		lp="1229,607.5",
		pos="e,1210,594.27 1210,620.71 1210,615.59 1210,608.85 1210,602.67"];
	extract_basename_2 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 19 1484.56 718.58 1472.54 715.27 1458.19 711.83 1445 710 1412.3 705.47 1179.32 712.44 1148 702 1146.45 701.48 1124.9 \
686.36 1124 685 1103.39 653.9 1130.77 630.9 1106 603 1098.81 594.91 1092.09 600.88 1083 595 1027.35 558.99 978.39 495.56 957.61 \
466.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 959.62 465.03 953.59 460.72 955.61 467.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1128.5 583.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="1128.5,585",
		pos="e,952.72,459.48 1484.6,718.58 1472.5,715.27 1458.2,711.83 1445,710 1412.3,705.47 1179.3,712.44 1148,702 1146.4,701.48 1124.9,686.36 \
1124,685 1103.4,653.9 1130.8,630.9 1106,603 1098.8,594.91 1092.1,600.88 1083,595 1027.3,558.99 978.39,495.56 957.61,466.42"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 19 1510.69 718.72 1509.2 708.65 1507 691.12 1507 676 1507 676 1507 676 1507 561.5 1507 507.45 1513.14 492.89 1502 \
440 1494.23 403.09 1471 398.72 1471 361 1471 361 1471 361 1471 269 1471 170.36 1326.5 144.83 1246.23 138.25 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1246.87 135.85 1239.71 137.76 1246.5 140.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1544.5 425.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1544.5,427.5",
		pos="e,1238.2,137.64 1510.7,718.72 1509.2,708.65 1507,691.12 1507,676 1507,676 1507,676 1507,561.5 1507,507.45 1513.1,492.89 1502,440 \
1494.2,403.09 1471,398.72 1471,361 1471,361 1471,361 1471,269 1471,170.36 1326.5,144.83 1246.2,138.25"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 7 1504.45 718.83 1490.05 703.58 1457.22 670.28 1425 648 1363.47 605.45 1282.57 569.98 1239.68 552.57 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1240.69 550.34 1233.28 550 1238.86 554.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1445.5 628.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1445.5,630",
		pos="e,1231.9,549.43 1504.4,718.83 1490,703.58 1457.2,670.28 1425,648 1363.5,605.45 1282.6,569.98 1239.7,552.57"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 1513.58 718.73 1515.35 708.67 1518 691.16 1518 676 1518 676 1518 676 1518 584 1518 531.94 1469.21 486.2 1441.56 \
464.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1443.28 462.68 1436.23 460.37 1440.3 466.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1566.5 583.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1566.5,585",
		pos="e,1435,459.45 1513.6,718.73 1515.4,708.67 1518,691.16 1518,676 1518,676 1518,676 1518,584 1518,531.94 1469.2,486.2 1441.6,464.45"];
	extract_basename_2 -> "bowtie-se"	[_draw_="c 7 -#000000 B 13 1482.86 718.57 1471.17 715.46 1457.53 712.17 1445 710 1408.05 703.59 1397.48 710.69 1361 702 1350.32 699.46 1348.6 \
695.84 1338 693 1314.69 686.75 1287.99 682.59 1266.51 679.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1266.99 677.54 1259.76 679.15 1266.42 682.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1394.5 695.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1394.5,697.5",
		pos="e,1258.3,678.97 1482.9,718.57 1471.2,715.46 1457.5,712.17 1445,710 1408,703.59 1397.5,710.69 1361,702 1350.3,699.46 1348.6,695.84 \
1338,693 1314.7,686.75 1288,682.59 1266.5,679.95"];
	index_masked_bams -> mark_duplicates	[_draw_="c 7 -#000000 B 4 817.76 350.5 808.22 344.38 795.16 336 784.3 329.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 785.7 327.01 778.48 325.3 783.05 331.14 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 822 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="822,337.5",
		pos="e,777.21,324.48 817.76,350.5 808.22,344.38 795.16,336 784.3,329.03"];
}