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	"bowtie-pe"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1177.5 665.5 1177.5 684.5 1242.5 684.5 1242.5 665.5 ",
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		pos="722,450",
		rects="651.5,440.5,792.5,459.5",
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	ENCODE_blacklist_bedfile -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 13 681.46 718.63 675.41 714.31 668.61 708.56 664 702 656.97 692 655 688.23 655 676 655 676 655 676 655 494 655 479.19 \
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	input_fastq_read1_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 1181.86 737.37 1195.81 744.72 1216.71 755.66 1235 765 1249.31 772.31 1265.39 780.36 1278.31 786.78 ",
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		label=input_file,
		lp="1287,777.5",
		pos="e,1285.9,790.56 1181.9,737.37 1195.8,744.72 1216.7,755.66 1235,765 1249.3,772.31 1265.4,780.36 1278.3,786.78"];
	input_fastq_read1_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 1164.48 718.61 1163.61 711.17 1163.6 700.36 1169 693 1169.99 691.65 1171.11 690.4 1172.33 689.26 ",
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		label=input_fastq_read1_file,
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	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 13 800 718.7 800 708.6 800 691.05 800 676 800 676 800 676 800 471.5 800 391.93 777.36 374.65 760 297 748.29 244.61 \
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	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 10 814.09 718.51 820.03 715.32 827.15 711.99 834 710 867.89 700.17 882.24 719.3 913 702 934.97 689.64 950.22 663.72 \
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 16 814.12 718.63 820.07 715.45 827.19 712.1 834 710 859.29 702.2 872.08 718.21 893 702 913.48 686.12 903.66 671.3 \
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 933.5 650.6 0 37 8 -nthreads ",
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		label=filtered2sorted,
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 13 806.01 718.55 823.8 693.67 876.41 621.28 899 603 905.18 598 910.13 601.28 915 595 933.11 571.65 915.06 556.06 \
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	nthreads -> "bowtie-pe"	[_draw_="c 7 -#000000 B 13 813.72 718.55 819.72 715.28 826.99 711.88 834 710 892.06 694.47 909.69 711.74 969 702 984 699.54 987.03 695.63 \
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	nthreads -> sort_masked_bams	[_draw_="c 7 -#000000 B 13 784.78 718.57 779.26 715.68 772.93 712.53 767 710 724.21 691.74 668 722.52 668 676 668 676 668 676 668 584 668 \
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		pos="e,600.31,414.37 784.78,718.57 779.26,715.68 772.93,712.53 767,710 724.21,691.74 668,722.52 668,676 668,676 668,676 668,584 668,519.21 \
625.68,450.62 605.05,421.03"];
	sort_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 760 260.5 760 279.5 898 279.5 898 260.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 829 267.5 0 122 21 -sort_dups_marked_bams ",
		height=0.27778,
		label=sort_dups_marked_bams,
		pos="829,270",
		rects="760,260.5,898,279.5",
		width=1.9167];
	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 16 803.55 718.51 807.4 708.52 813 691.35 813 676 813 676 813 676 813 584 813 504.17 837 485.83 837 406 837 406 837 \
406 837 314 837 305.17 835.35 295.5 833.55 287.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 835.97 287.15 831.9 280.95 831.22 288.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 845.5 493.1 0 37 8 -nthreads ",
		label=nthreads,
		lp="845.5,495",
		pos="e,831.53,279.48 803.55,718.51 807.4,708.52 813,691.35 813,676 813,676 813,676 813,584 813,504.17 837,485.83 837,406 837,406 837,\
406 837,314 837,305.17 835.35,295.5 833.55,287.56"];
	mark_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 515 305.5 515 324.5 613 324.5 613 305.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 564 312.5 0 82 15 -mark_duplicates ",
		height=0.27778,
		label=mark_duplicates,
		pos="564,315",
		rects="515,305.5,613,324.5",
		width=1.3611];
	picard_java_opts -> mark_duplicates	[_draw_="c 7 -#000000 B 10 558.09 718.72 546.62 709.68 531 694.06 531 676 531 676 531 676 531 359 531 347.6 538.39 337.36 546.17 329.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 547.38 331.95 550.96 325.45 544.11 328.3 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 551 515.6 0 40 9 -java_opts ",
		label=java_opts,
		lp="551,517.5",
		pos="e,552.09,324.44 558.09,718.72 546.62,709.68 531,694.06 531,676 531,676 531,676 531,359 531,347.6 538.39,337.36 546.17,329.74"];
	picard_jar_path -> mark_duplicates	[_draw_="c 7 -#000000 B 10 467.11 718.81 463.85 708.84 459 691.4 459 676 459 676 459 676 459 359 459 335.28 482.22 324.37 506.82 319.45 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 507.22 321.87 513.7 318.26 506.38 317.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 490.5 515.6 0 63 15 -picard_jar_path ",
		label=picard_jar_path,
		lp="490.5,517.5",
		pos="e,515.19,318 467.11,718.81 463.85,708.84 459,691.4 459,676 459,676 459,676 459,359 459,335.28 482.22,324.37 506.82,319.45"];
	input_fastq_read2_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 1289.73 718.74 1277.58 709 1258.79 694 1257 693 1253.49 691.05 1249.71 689.24 1245.88 687.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1246.81 685.33 1239.4 685.01 1244.99 689.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1313.5 695.6 0 91 22 -input_fastq_read2_file ",
		label=input_fastq_read2_file,
		lp="1313.5,697.5",
		pos="e,1238,684.45 1289.7,718.74 1277.6,709 1258.8,694 1257,693 1253.5,691.05 1249.7,689.24 1245.9,687.6"];
	execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 1071 440.5 1071 459.5 1229 459.5 1229 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1150 447.5 0 142 27 -execute_pcr_bottleneck_coef ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label=execute_pcr_bottleneck_coef,
		pos="1150,450",
		rects="1071,440.5,1229,459.5",
		width=2.1944];
	genome_sizes_file -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 912.46 718.51 922.5 715.44 934.2 712.18 945 710 960.35 706.9 1002.04 710.78 1015 702 1058.75 672.35 1123.5 517.38 \
1143.73 466.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1145.91 468.06 1146.22 460.65 1141.36 466.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1125.5 583.1 0 59 12 -genome_sizes ",
		label=genome_sizes,
		lp="1125.5,585",
		pos="e,1146.8,459.24 912.46,718.51 922.5,715.44 934.2,712.18 945,710 960.35,706.9 1002,710.78 1015,702 1058.8,672.35 1123.5,517.38 1143.7,\
466.91"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 745 170.5 745 189.5 855 189.5 855 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 800 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="800,180",
		rects="745,170.5,855,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 4 785.97 170.5 775.76 164.32 761.76 155.84 750.19 148.83 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 751.55 146.79 744.29 145.26 749.01 150.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 789 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="789,157.5",
		pos="e,743,144.48 785.97,170.5 775.76,164.32 761.76,155.84 750.19,148.83"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 431.5 80.5 431.5 99.5 592.5 99.5 592.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 512 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="512,90",
		rects="431.5,80.5,592.5,99.5",
		width=2.2361];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 472.49 80.5 440.03 73.53 393.95 63.62 359.48 56.21 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 360.27 53.87 352.91 54.8 359.24 58.66 ",
		pos="e,351.43,54.478 472.49,80.505 440.03,73.526 393.95,63.618 359.48,56.209"];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 7 686.13 125.53 672.36 122.81 657.03 119.78 643 117 616.65 111.78 587.33 105.96 563.11 101.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 563.6 98.75 556.26 99.79 562.65 103.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 673 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="673,112.5",
		pos="e,554.77,99.498 686.13,125.53 672.36,122.81 657.03,119.78 643,117 616.65,111.78 587.33,105.96 563.11,101.15"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 631.5 80.5 631.5 99.5 742.5 99.5 742.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 687 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="687,90",
		rects="631.5,80.5,742.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 4 720.9 125.71 715.21 119.88 707.45 111.93 700.79 105.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 702.77 103.64 696.13 100.35 699.27 107.07 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 730 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="730,112.5",
		pos="e,695.07,99.265 720.9,125.71 715.21,119.88 707.45,111.93 700.79,105.12"];
	masked_file_basename	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 653.5 395.5 653.5 414.5 784.5 414.5 784.5 395.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 719 402.5 0 115 20 -masked_file_basename ",
		height=0.27778,
		label=masked_file_basename,
		pos="719,405",
		rects="653.5,395.5,784.5,414.5",
		width=1.8194];
	remove_encode_blacklist -> masked_file_basename	[_draw_="c 7 -#000000 B 4 721.42 440.71 721.06 435.59 720.59 428.85 720.16 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 722.61 422.59 719.68 415.78 717.73 422.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 739 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="739,427.5",
		pos="e,719.58,414.27 721.42,440.71 721.06,435.59 720.59,428.85 720.16,422.67"];
	remove_encode_blacklist -> sort_masked_bams	[_draw_="c 7 -#000000 B 7 698.74 440.61 684.2 435.41 665.05 428.68 648 423 641.97 420.99 635.54 418.91 629.29 416.93 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 630.38 414.7 622.97 414.93 628.91 419.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 691 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="691,427.5",
		pos="e,621.53,414.47 698.74,440.61 684.2,435.41 665.05,428.68 648,423 641.97,420.99 635.54,418.91 629.29,416.93"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 4 964.81 620.71 964.69 615.59 964.53 608.85 964.39 602.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 966.84 602.72 964.23 595.78 961.94 602.83 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 983 605.6 0 38 10 -input_file ",
		label=input_file,
		lp="983,607.5",
		pos="e,964.19,594.27 964.81,620.71 964.69,615.59 964.53,608.85 964.39,602.67"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 756 215.5 756 234.5 902 234.5 902 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 829 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="829,225",
		rects="756,215.5,902,234.5",
		width=2.0278];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 13 845.92 215.53 849.33 213.16 852.59 210.32 855 207 862.02 197.31 862 192.97 862 181 862 181 862 181 862 89 862 \
73.87 829.68 63.12 797.39 56.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 798.04 53.78 790.69 54.76 797.05 58.58 ",
		pos="e,789.21,54.454 845.92,215.53 849.33,213.16 852.59,210.32 855,207 862.02,197.31 862,192.97 862,181 862,181 862,181 862,89 862,73.875 \
829.68,63.118 797.39,56.146"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 823.41 215.71 819.64 210.12 814.55 202.58 810.09 195.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 812.37 194.95 806.42 190.52 808.3 197.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 836 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="836,202.5",
		pos="e,805.57,189.27 823.41,215.71 819.64,210.12 814.55,202.58 810.09,195.96"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 652.43 80.5 624.38 73.61 584.72 63.87 554.7 56.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 555.35 54.13 547.97 54.84 554.19 58.89 ",
		pos="e,546.5,54.478 652.43,80.505 624.38,73.614 584.72,63.869 554.7,56.491"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 876 170.5 876 189.5 952 189.5 952 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 914 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="914,180",
		rects="876,170.5,952,189.5",
		width=1.0556];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 10 940.91 575.59 926.63 568.73 911 557.47 911 541 911 541 911 541 911 224 911 215.29 911.62 205.6 912.3 197.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 914.73 197.94 912.94 190.74 909.85 197.48 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 930 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="930,382.5",
		pos="e,913.08,189.23 940.91,575.59 926.63,568.73 911,557.47 911,541 911,541 911,541 911,224 911,215.29 911.62,205.6 912.3,197.64"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 929.5 530.5 929.5 549.5 1024.5 549.5 1024.5 530.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 977 537.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="977,540",
		rects="929.5,530.5,1024.5,549.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 966.51 575.71 968.09 570.47 970.19 563.53 972.09 557.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 974.38 558.12 974.06 550.71 969.69 556.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 990 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="990,562.5",
		pos="e,974.5,549.27 966.51,575.71 968.09,570.47 970.19,563.53 972.09,557.24"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1381.5 718.5 1381.5 737.5 1500.5 737.5 1500.5 718.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1441 725.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1441,728",
		rects="1381.5,718.5,1500.5,737.5",
		width=1.6528];
	extract_basename_2 -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 25 1412.54 718.59 1400.72 715.4 1386.8 712.06 1374 710 1323.85 701.94 1308.2 718.01 1260 702 1252.98 699.67 1252.97 \
695.48 1246 693 1216.51 682.48 1206.97 689.61 1176 685 1066.5 668.71 1037.14 671.47 931 640 881.14 625.22 861.2 630.28 823 595 809.42 \
582.46 813.88 573.62 804 558 782.06 523.32 751.71 485.96 734.76 465.85 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 736.74 464.39 730.34 460.64 733 467.57 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 868.5 583.1 0 91 20 -output_basename_file ",
		label=output_basename_file,
		lp="868.5,585",
		pos="e,729.36,459.49 1412.5,718.59 1400.7,715.4 1386.8,712.06 1374,710 1323.9,701.94 1308.2,718.01 1260,702 1253,699.67 1253,695.48 1246,\
693 1216.5,682.48 1207,689.61 1176,685 1066.5,668.71 1037.1,671.47 931,640 881.14,625.22 861.2,630.28 823,595 809.42,582.46 813.88,\
573.62 804,558 782.06,523.32 751.71,485.96 734.76,465.85"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1246.5 125.5 1246.5 144.5 1335.5 144.5 1335.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1291 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1291,135",
		rects="1246.5,125.5,1335.5,144.5",
		width=1.2361];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1457.59 718.5 1471.8 709.9 1490 695.15 1490 676 1490 676 1490 676 1490 606.5 1490 515.32 1388 519.68 1388 428.5 \
1388 428.5 1388 428.5 1388 246.5 1388 201.74 1342.5 166.46 1313.82 148.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1315.15 146.6 1307.88 145.1 1312.62 150.81 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1433.5 425.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1433.5,427.5",
		pos="e,1306.6,144.32 1457.6,718.5 1471.8,709.9 1490,695.15 1490,676 1490,676 1490,676 1490,606.5 1490,515.32 1388,519.68 1388,428.5 1388,\
428.5 1388,428.5 1388,246.5 1388,201.74 1342.5,166.46 1313.8,148.67"];
	extract_basename_2 -> "bowtie-pe"	[_draw_="c 7 -#000000 B 10 1410 718.55 1396.95 714.41 1381.85 708.84 1369 702 1363.11 698.87 1363.19 695.47 1357 693 1338.25 685.53 1287.15 \
680.82 1250.46 678.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1251.06 675.89 1243.92 677.87 1250.74 680.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1402.5 695.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1402.5,697.5",
		pos="e,1242.4,677.77 1410,718.55 1397,714.41 1381.9,708.84 1369,702 1363.1,698.87 1363.2,695.47 1357,693 1338.3,685.53 1287.1,680.82 \
1250.5,678.3"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1444.16 718.65 1450.84 699.46 1464.22 651.41 1444 620 1429.46 597.42 1408.7 613.25 1389 595 1375.13 582.15 1381.87 \
570.86 1368 558 1314.78 508.65 1234.54 477.28 1187.7 462.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1188.49 459.71 1181.08 459.92 1187 464.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1437.5 583.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1437.5,585",
		pos="e,1179.6,459.46 1444.2,718.65 1450.8,699.46 1464.2,651.41 1444,620 1429.5,597.42 1408.7,613.25 1389,595 1375.1,582.15 1381.9,570.86 \
1368,558 1314.8,508.65 1234.5,477.28 1187.7,462.03"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 10 1440.35 718.7 1439.49 711.52 1437.51 701.04 1433 693 1432.29 691.74 1360.27 620.68 1359 620 1252.85 563.21 1109.91 \
547.19 1032.47 542.71 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1032.91 540.28 1025.78 542.35 1032.64 545.18 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1412.5 628.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1412.5,630",
		pos="e,1024.3,542.27 1440.3,718.7 1439.5,711.52 1437.5,701.04 1433,693 1432.3,691.74 1360.3,620.68 1359,620 1252.8,563.21 1109.9,547.19 \
1032.5,542.71"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1188 80.5 1188 99.5 1300 99.5 1300 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1244 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1244,90",
		rects="1188,80.5,1300,99.5",
		width=1.5556];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 4 1242.84 80.71 1242.13 75.59 1241.19 68.85 1240.33 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1242.76 62.36 1239.36 55.76 1237.9 63.04 ",
		pos="e,1239.2,54.265 1242.8,80.709 1242.1,75.593 1241.2,68.848 1240.3,62.666"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 957 440.5 957 459.5 1067 459.5 1067 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1012 447.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="1012,450",
		rects="957,440.5,1067,459.5",
		width=1.5278];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 10 1335.44 128.79 1344.2 126.25 1352.87 122.5 1360 117 1378.42 102.78 1372.62 90.7 1385 71 1387.11 67.65 1389.5 64.15 \
1391.83 60.86 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1393.69 62.47 1395.84 55.37 1389.73 59.58 ",
		pos="e,1396.7,54.152 1335.4,128.79 1344.2,126.25 1352.9,122.5 1360,117 1378.4,102.78 1372.6,90.703 1385,71 1387.1,67.649 1389.5,64.146 \
1391.8,60.859"];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1279.55 125.66 1276.08 123 1272.3 119.97 1269 117 1264.84 113.27 1260.54 108.98 1256.71 104.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1258.76 103.58 1252.19 100.14 1255.18 106.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1316 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1316,112.5",
		pos="e,1251.2,99.033 1279.6,125.66 1276.1,123 1272.3,119.97 1269,117 1264.8,113.27 1260.5,108.98 1256.7,104.97"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 895.5 125.5 895.5 144.5 978.5 144.5 978.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 937 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="937,135",
		rects="895.5,125.5,978.5,144.5",
		width=1.1528];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 869 80.5 869 99.5 1027 99.5 1027 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 948 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="948,90",
		rects="869,80.5,1027,99.5",
		width=2.1944];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 939.12 125.71 940.46 120.47 942.24 113.53 943.85 107.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 946.15 108.12 945.51 100.73 941.4 106.91 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 959.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="959.5,112.5",
		pos="e,945.89,99.265 939.12,125.71 940.46,120.47 942.24,113.53 943.85,107.24"];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 1321.21 790.57 1335.62 783.82 1356.21 774.03 1374 765 1388.96 757.4 1405.58 748.48 1418.52 741.42 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1419.38 743.74 1424.34 738.22 1417.03 739.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1374 775.6 0 36 9 -file_path ",
		label=file_path,
		lp="1374,777.5",
		pos="e,1425.7,737.5 1321.2,790.57 1335.6,783.82 1356.2,774.03 1374,765 1389,757.4 1405.6,748.48 1418.5,741.42"];
	filtered2sorted -> remove_encode_blacklist	[_draw_="c 7 -#000000 B 4 918.26 486.16 878.71 479.08 820.3 468.61 777.48 460.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 777.95 458.53 770.62 459.71 777.08 463.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 866 470.6 0 6 1 -a ",
		label=a,
		lp="866,472.5",
		pos="e,769.13,459.44 918.26,486.16 878.71,479.08 820.3,468.61 777.48,460.94"];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 961.23 485.87 961.14 480.26 961.96 472.95 966 468 967.18 466.55 968.5 465.23 969.92 464.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 971.05 466.21 975.46 460.25 968.29 462.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 985 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="985,472.5",
		pos="e,976.71,459.4 961.23,485.87 961.14,480.26 961.96,472.95 966,468 967.18,466.55 968.5,465.23 969.92,464.02"];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 13 960.43 485.65 959.21 478.79 957.64 468.81 957 460 956.35 451.13 956.84 448.89 957 440 958.11 379.97 932.61 357.35 \
962 305 1019.1 203.3 1160.79 160.84 1238.29 144.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1238.64 147.18 1245.02 143.4 1237.67 142.38 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 996 313.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="996,315",
		pos="e,1246.5,143.1 960.43,485.65 959.21,478.79 957.64,468.81 957,460 956.35,451.13 956.84,448.89 957,440 958.11,379.97 932.61,357.35 \
962,305 1019.1,203.3 1160.8,160.84 1238.3,144.75"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 10 983.9 485.52 989.6 483.03 995.64 480.12 1001 477 1006.76 473.65 1006.82 470.49 1013 468 1015.93 466.82 1039.75 \
463.72 1066.72 460.48 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.01 462.92 1073.67 459.66 1066.43 458.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1045 470.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1045,472.5",
		pos="e,1075.2,459.48 983.9,485.52 989.6,483.03 995.64,480.12 1001,477 1006.8,473.65 1006.8,470.49 1013,468 1015.9,466.82 1039.7,463.72 \
1066.7,460.48"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1523.5 80.5 1523.5 99.5 1644.5 99.5 1644.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1584 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="1584,90",
		rects="1523.5,80.5,1644.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 1601.39 80.5 1614.52 74.09 1632.73 65.19 1647.37 58.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1648.08 60.42 1653.29 55.14 1645.93 56.01 ",
		pos="e,1654.7,54.478 1601.4,80.505 1614.5,74.085 1632.7,65.188 1647.4,58.036"];
	"bowtie-pe" -> output_bowtie_log	[_draw_="c 7 -#000000 B 19 1225.02 665.58 1265.89 641.46 1376 567.72 1376 473.5 1376 473.5 1376 473.5 1376 314 1376 254.61 1389 240.39 1389 \
181 1389 181 1389 181 1389 89 1389 46.51 1440.2 74.85 1481 63 1487.77 61.03 1494.99 58.91 1501.92 56.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1502.44 59.25 1508.45 54.9 1501.04 54.55 ",
		pos="e,1509.9,54.468 1225,665.58 1265.9,641.46 1376,567.72 1376,473.5 1376,473.5 1376,473.5 1376,314 1376,254.61 1389,240.39 1389,181 \
1389,181 1389,181 1389,89 1389,46.51 1440.2,74.85 1481,63 1487.8,61.034 1495,58.907 1501.9,56.845"];
	"bowtie-pe" -> sam2bam	[_draw_="c 7 -#000000 B 4 1177.72 668.33 1133.47 660.57 1053.97 646.62 1005.7 638.14 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1006.16 635.74 998.84 636.94 1005.31 640.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1128 650.6 0 38 10 -input_file ",
		label=input_file,
		lp="1128,652.5",
		pos="e,997.35,636.68 1177.7,668.33 1133.5,660.57 1054,646.62 1005.7,638.14"];
	"bowtie-pe" -> mapped_reads_count	[_draw_="c 7 -#000000 B 16 1242.43 674.4 1280.91 674.19 1342 671.48 1359 657 1373.41 644.73 1373.99 592.15 1382 575 1419.44 494.89 1487 494.43 \
1487 406 1487 406 1487 406 1487 134 1487 116.91 1499.74 106.56 1515.99 100.31 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1516.39 102.76 1522.24 98.2 1514.82 98.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1509.5 380.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="1509.5,382.5",
		pos="e,1523.7,97.712 1242.4,674.4 1280.9,674.19 1342,671.48 1359,657 1373.4,644.73 1374,592.15 1382,575 1419.4,494.89 1487,494.43 1487,\
406 1487,406 1487,406 1487,134 1487,116.91 1499.7,106.56 1516,100.31"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 515.01 312.32 425.81 308.61 246 297.81 246 271 246 271 246 271 246 89 246 73.72 213.64 63.03 180.96 56.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 181.5 53.74 174.15 54.76 180.53 58.54 ",
		pos="e,172.67,54.46 515.01,312.32 425.81,308.61 246,297.81 246,271 246,271 246,271 246,89 246,73.724 213.64,63.034 180.96,56.133"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 612.91 306.06 656.79 298.94 721.33 288.47 768.45 280.82 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 768.73 283.26 775.25 279.72 767.95 278.42 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 739 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="739,292.5",
		pos="e,776.74,279.48 612.91,306.06 656.79,298.94 721.33,288.47 768.45,280.82"];
	masked_file_basename -> mark_duplicates	[_draw_="c 7 -#000000 B 10 711.64 395.82 701.07 384.44 680.59 363.67 660 350 644.92 339.99 639.96 339.3 623 333 617.1 330.81 610.78 328.72 \
604.55 326.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 605.6 324.57 598.19 324.92 604.21 329.27 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 717.5 358.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="717.5,360",
		pos="e,596.74,324.49 711.64,395.82 701.07,384.44 680.59,363.67 660,350 644.92,339.99 639.96,339.3 623,333 617.1,330.81 610.78,328.72 \
604.55,326.81"];
	index_masked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 538.5 350.5 538.5 369.5 657.5 369.5 657.5 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 598 357.5 0 103 17 -index_masked_bams ",
		height=0.27778,
		label=index_masked_bams,
		pos="598,360",
		rects="538.5,350.5,657.5,369.5",
		width=1.6528];
	sort_masked_bams -> index_masked_bams	[_draw_="c 7 -#000000 B 4 594.77 395.71 595.25 390.59 595.87 383.85 596.45 377.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 598.88 377.97 597.09 370.77 594 377.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 615 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="615,382.5",
		pos="e,597.23,369.27 594.77,395.71 595.25,390.59 595.87,383.85 596.45,377.67"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 10 1103.49 440.54 1071.21 433.3 1034 421.57 1034 406 1034 406 1034 406 1034 89 1034 74.15 1045.73 64.22 1059.44 57.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1060.32 59.97 1065.81 54.98 1058.41 55.46 ",
		pos="e,1067.2,54.389 1103.5,440.54 1071.2,433.3 1034,421.57 1034,406 1034,406 1034,406 1034,89 1034,74.15 1045.7,64.219 1059.4,57.681"];
	index_masked_bams -> mark_duplicates	[_draw_="c 7 -#000000 B 4 591.44 350.71 586.93 345 580.81 337.26 575.49 330.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 577.74 329.42 571.47 325.45 573.89 332.46 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 603 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="603,337.5",
		pos="e,570.54,324.27 591.44,350.71 586.93,345 580.81,337.26 575.49,330.54"];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 918.43 170.71 921.36 165.24 925.29 157.9 928.77 151.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 930.72 152.93 931.87 145.6 926.4 150.62 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 936.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="936.5,157.5",
		pos="e,932.58,144.27 918.43,170.71 921.36,165.24 925.29,157.9 928.77,151.38"];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 829 260.71 829 255.59 829 248.85 829 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 831.45 242.78 829 235.78 826.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 848 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="848,247.5",
		pos="e,829,234.27 829,260.71 829,255.59 829,248.85 829,242.67"];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 948.77 80.71 949.25 75.59 949.87 68.85 950.45 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 952.88 62.97 951.09 55.77 948 62.52 ",
		pos="e,951.23,54.265 948.77,80.709 949.25,75.593 949.87,68.848 950.45,62.666"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 974.11 530.71 972.28 525.47 969.86 518.53 967.66 512.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 970 511.5 965.38 505.69 965.37 513.11 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 989 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="989,517.5",
		pos="e,964.88,504.27 974.11,530.71 972.28,525.47 969.86,518.53 967.66,512.24"];
}