digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 374 323 374 0 ",
		bb="0,0,374,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
	];
	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 260 8 315 288 315 288 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 303 0 84 15 -Workflow Inputs ",
			bb="8,260,288,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		indexed_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 268.5 16 287.5 128 287.5 128 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 72 275.5 0 96 17 -indexed_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=indexed_sequences,
			pos="72,278",
			rects="16,268.5,128,287.5",
			width=1.5556];
		model	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 132.5 268.5 132.5 287.5 279.5 287.5 279.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 206 275.5 0 131 25 -tRNA model to search with ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="tRNA model to search with",
			pos="206,278",
			rects="132.5,268.5,279.5,287.5",
			width=2.0417];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 98 8 98 63 366 63 366 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 152 15 0 92 16 -Workflow Outputs ",
			bb="98,8,366,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="152,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		matching_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 106.5 35.5 106.5 54.5 225.5 54.5 225.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 166 42.5 0 103 18 -matching_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=matching_sequences,
			pos="166,45",
			rects="106.5,35.5,225.5,54.5",
			width=1.6528];
		hmmer_search_results	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 230 35.5 230 54.5 358 54.5 358 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 294 42.5 0 112 20 -hmmer_search_results ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=hmmer_search_results,
			pos="294,45",
			rects="230,35.5,358,54.5",
			width=1.7778];
	}
	fetch_aligned_sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 25 80.5 25 99.5 277 99.5 277 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 151 87.5 0 236 46 -extract by names from an indexed sequence file ",
		height=0.27778,
		label="extract by names from an indexed sequence file",
		pos="151,90",
		rects="25,80.5,277,99.5",
		width=3.5];
	indexed_sequences -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 10 70.95 268.71 69.76 258.63 68 241.1 68 226 68 226 68 226 68 134 68 118.66 79.32 108.79 93.59 102.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 94.25 104.81 99.87 99.97 92.46 100.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 109 178.1 0 82 17 -indexed_sequences ",
		label=indexed_sequences,
		lp="109,180",
		pos="e,101.28,99.421 70.949,268.71 69.764,258.63 68,241.1 68,226 68,226 68,226 68,134 68,118.66 79.316,108.79 93.591,102.43"];
	nhmmer	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 89.5 215.5 89.5 234.5 330.5 234.5 330.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 222.5 0 225 45 -search profile(s) against a sequence database ",
		height=0.27778,
		label="search profile(s) against a sequence database",
		pos="210,225",
		rects="89.5,215.5,330.5,234.5",
		width=3.3472];
	indexed_sequences -> nhmmer	[_draw_="c 7 -#000000 B 7 93.51 268.57 111.49 261.57 137.84 251.44 161 243 166.23 241.09 171.79 239.12 177.22 237.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 177.79 239.61 183.59 235 176.17 234.99 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 184 245.6 0 46 9 -sequences ",
		label=sequences,
		lp="184,247.5",
		pos="e,185.02,234.5 93.511,268.57 111.49,261.57 137.84,251.44 161,243 166.23,241.09 171.79,239.12 177.22,237.22"];
	model -> nhmmer	[_draw_="c 7 -#000000 B 4 206.66 268.58 207.21 261.52 208.02 251.24 208.7 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 211.13 242.94 209.23 235.77 206.24 242.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 220 245.6 0 24 5 -query ",
		label=query,
		lp="220,247.5",
		pos="e,209.35,234.26 206.66,268.58 207.21,261.52 208.02,251.24 208.7,242.55"];
	fetch_aligned_sequences -> matching_sequences	[_draw_="c 7 -#000000 B 4 153.89 80.71 155.72 75.47 158.14 68.53 160.34 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 162.63 63.11 162.62 55.69 158 61.5 ",
		pos="e,163.12,54.265 153.89,80.709 155.72,75.474 158.14,68.534 160.34,62.235"];
	extract_coordinates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 75.5 125.5 75.5 144.5 188.5 144.5 188.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 132 132.5 0 97 19 -extract_coordinates ",
		height=0.27778,
		label=extract_coordinates,
		pos="132,135",
		rects="75.5,125.5,188.5,144.5",
		width=1.5694];
	extract_coordinates -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 7 132.08 125.93 132.4 120.61 133.37 113.63 136 108 136.32 107.31 136.68 106.63 137.07 105.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 138.9 107.6 141.1 100.52 134.96 104.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 150 110.6 0 28 5 -names ",
		label=names,
		lp="150,112.5",
		pos="e,142,99.302 132.08,125.93 132.4,120.61 133.37,113.63 136,108 136.32,107.31 136.68,106.63 137.07,105.97"];
	extract_coord_lines	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 154 170.5 154 189.5 266 189.5 266 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 210 177.5 0 96 19 -extract_coord_lines ",
		height=0.27778,
		label=extract_coord_lines,
		pos="210,180",
		rects="154,170.5,266,189.5",
		width=1.5556];
	extract_coord_lines -> extract_coordinates	[_draw_="c 7 -#000000 B 4 194.59 170.5 183.16 164.2 167.4 155.51 154.55 148.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.02 146.44 148.7 145.21 153.65 150.73 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 212 155.6 0 68 16 -coordinate_lines ",
		label=coordinate_lines,
		lp="212,157.5",
		pos="e,147.38,144.48 194.59,170.5 183.16,164.2 167.4,155.51 154.55,148.43"];
	nhmmer -> hmmer_search_results	[_draw_="c 7 -#000000 B 10 273.37 215.54 290.79 209.41 305 198.92 305 181 305 181 305 181 305 89 305 80.04 302.73 70.35 300.26 62.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 302.57 61.65 297.97 55.83 297.94 63.25 ",
		pos="e,297.48,54.404 273.37,215.54 290.79,209.41 305,198.92 305,181 305,181 305,181 305,89 305,80.042 302.73,70.353 300.26,62.444"];
	nhmmer -> extract_coord_lines	[_draw_="c 7 -#000000 B 4 210 215.71 210 210.59 210 203.85 210 197.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 212.45 197.78 210 190.78 207.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 229 200.6 0 38 7 -summary ",
		label=summary,
		lp="229,202.5",
		pos="e,210,189.27 210,215.71 210,210.59 210,203.85 210,197.67"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 193 125.5 193 144.5 229 144.5 229 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 211 132.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="211,135",
		rects="193,125.5,229,144.5",
		width=0.5];
	default1 -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 7 193.39 126.54 184.35 122.64 174.85 118.39 173 117 168.76 113.81 164.79 109.67 161.42 105.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 163.53 104.35 157.31 100.31 159.66 107.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 237 110.6 0 128 27 -names_contain_subseq_coords ",
		label=names_contain_subseq_coords,
		lp="237,112.5",
		pos="e,156.38,99.113 193.39,126.54 184.35,122.64 174.85,118.39 173,117 168.76,113.81 164.79,109.67 161.42,105.63"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 296.5 268.5 296.5 287.5 325.5 287.5 325.5 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 311 275.5 0 13 2 -40 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=40,
		pos="311,278",
		rects="296.5,268.5,325.5,287.5",
		width=0.40278];
	default2 -> nhmmer	[_draw_="c 7 -#000000 B 7 301.52 268.83 297.77 265.83 293.33 262.55 289 260 274.13 251.24 256.58 243.46 241.8 237.56 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 242.74 235.29 235.32 235.03 240.95 239.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 310 245.6 0 76 18 -bitscore_threshold ",
		label=bitscore_threshold,
		lp="310,247.5",
		pos="e,233.91,234.48 301.52,268.83 297.77,265.83 293.33,262.55 289,260 274.13,251.24 256.58,243.46 241.8,237.56"];
}