digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 323 390 323 390 0 ",
		bb="0,0,390,323",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
	];
	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 260 8 315 326 315 326 260 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 303 0 84 15 -Workflow Inputs ",
			bb="8,260,326,315",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,305.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		indexed_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 268.5 16 287.5 128 287.5 128 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 72 275.5 0 96 17 -indexed_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=indexed_sequences,
			pos="72,278",
			rects="16,268.5,128,287.5",
			width=1.5556];
		model	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 132.5 268.5 132.5 287.5 317.5 287.5 317.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 225 275.5 0 169 33 -rRNA protein model to search with ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="rRNA protein model to search with",
			pos="225,278",
			rects="132.5,268.5,317.5,287.5",
			width=2.5694];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 107 8 107 63 375 63 375 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 161 15 0 92 16 -Workflow Outputs ",
			bb="107,8,375,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="161,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		hmmer_search_results	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 239 35.5 239 54.5 367 54.5 367 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 303 42.5 0 112 20 -hmmer_search_results ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=hmmer_search_results,
			pos="303,45",
			rects="239,35.5,367,54.5",
			width=1.7778];
		matching_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 115.5 35.5 115.5 54.5 234.5 54.5 234.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 175 42.5 0 103 18 -matching_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=matching_sequences,
			pos="175,45",
			rects="115.5,35.5,234.5,54.5",
			width=1.6528];
	}
	fetch_aligned_sequences	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 29 80.5 29 99.5 281 99.5 281 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 155 87.5 0 236 46 -extract by names from an indexed sequence file ",
		height=0.27778,
		label="extract by names from an indexed sequence file",
		pos="155,90",
		rects="29,80.5,281,99.5",
		width=3.5];
	indexed_sequences -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 10 72 268.7 72 258.6 72 241.05 72 226 72 226 72 226 72 134 72 118.66 83.32 108.79 97.59 102.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 98.25 104.81 103.87 99.97 96.46 100.24 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 113 178.1 0 82 17 -indexed_sequences ",
		label=indexed_sequences,
		lp="113,180",
		pos="e,105.28,99.421 72,268.7 72,258.6 72,241.05 72,226 72,226 72,226 72,134 72,118.66 83.316,108.79 97.591,102.43"];
	hmmsearch	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 104.5 215.5 104.5 234.5 345.5 234.5 345.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 225 222.5 0 225 45 -search profile(s) against a sequence database ",
		height=0.27778,
		label="search profile(s) against a sequence database",
		pos="225,225",
		rects="104.5,215.5,345.5,234.5",
		width=3.3472];
	indexed_sequences -> hmmsearch	[_draw_="c 7 -#000000 B 7 90.73 268.52 107.57 261.11 133.1 250.41 156 243 163.15 240.68 170.81 238.51 178.33 236.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.76 238.95 184.94 234.85 177.55 234.21 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 190 245.6 0 68 14 -sequence_query ",
		label=sequence_query,
		lp="190,247.5",
		pos="e,186.4,234.48 90.73,268.52 107.57,261.11 133.1,250.41 156,243 163.15,240.68 170.81,238.51 178.33,236.53"];
	model -> hmmsearch	[_draw_="c 7 -#000000 B 4 225 268.58 225 261.52 225 251.24 225 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 227.45 242.78 225 235.78 222.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 252.5 245.6 0 55 12 -hmm_profiles ",
		label=hmm_profiles,
		lp="252.5,247.5",
		pos="e,225,234.26 225,268.58 225,261.52 225,251.24 225,242.55"];
	fetch_aligned_sequences -> matching_sequences	[_draw_="c 7 -#000000 B 4 158.86 80.71 161.35 75.36 164.67 68.22 167.65 61.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 169.79 63.02 170.52 55.64 165.34 60.95 ",
		pos="e,171.16,54.265 158.86,80.709 161.35,75.355 164.67,68.217 167.65,61.807"];
	extract_coord_lines	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 161 170.5 161 189.5 273 189.5 273 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 217 177.5 0 96 19 -extract_coord_lines ",
		height=0.27778,
		label=extract_coord_lines,
		pos="217,180",
		rects="161,170.5,273,189.5",
		width=1.5556];
	extract_coordinates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 79.5 125.5 79.5 144.5 192.5 144.5 192.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 136 132.5 0 97 19 -extract_coordinates ",
		height=0.27778,
		label=extract_coordinates,
		pos="136,135",
		rects="79.5,125.5,192.5,144.5",
		width=1.5694];
	extract_coord_lines -> extract_coordinates	[_draw_="c 7 -#000000 B 4 201 170.5 189.13 164.2 172.76 155.51 159.42 148.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 160.64 146.31 153.31 145.19 158.34 150.63 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 217 155.6 0 68 16 -coordinate_lines ",
		label=coordinate_lines,
		lp="217,157.5",
		pos="e,151.97,144.48 201,170.5 189.13,164.2 172.76,155.51 159.42,148.43"];
	extract_coordinates -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 7 136.08 125.93 136.4 120.61 137.37 113.63 140 108 140.32 107.31 140.68 106.63 141.07 105.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 142.9 107.6 145.1 100.52 138.96 104.69 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 154 110.6 0 28 5 -names ",
		label=names,
		lp="154,112.5",
		pos="e,146,99.302 136.08,125.93 136.4,120.61 137.37,113.63 140,108 140.32,107.31 140.68,106.63 141.07,105.97"];
	hmmsearch -> hmmer_search_results	[_draw_="c 7 -#000000 B 10 275.8 215.58 293.49 209.49 309 199.02 309 181 309 181 309 181 309 89 309 80.13 307.73 70.32 306.36 62.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 308.81 62.11 305.11 55.68 304 63.02 ",
		pos="e,304.83,54.196 275.8,215.58 293.49,209.49 309,199.02 309,181 309,181 309,181 309,89 309,80.128 307.73,70.324 306.36,62.321"];
	hmmsearch -> extract_coord_lines	[_draw_="c 7 -#000000 B 4 223.46 215.71 222.48 210.47 221.19 203.53 220.02 197.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 222.5 197.19 218.81 190.75 217.69 198.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 240 200.6 0 38 7 -summary ",
		label=summary,
		lp="240,202.5",
		pos="e,218.54,189.27 223.46,215.71 222.48,210.47 221.19,203.53 220.02,197.24"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 197 125.5 197 144.5 233 144.5 233 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 215 132.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="215,135",
		rects="197,125.5,233,144.5",
		width=0.5];
	default1 -> fetch_aligned_sequences	[_draw_="c 7 -#000000 B 7 197.39 126.54 188.35 122.64 178.85 118.39 177 117 172.76 113.81 168.79 109.67 165.42 105.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 167.53 104.35 161.31 100.31 163.66 107.35 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 241 110.6 0 128 27 -names_contain_subseq_coords ",
		label=names_contain_subseq_coords,
		lp="241,112.5",
		pos="e,160.38,99.113 197.39,126.54 188.35,122.64 178.85,118.39 177,117 172.76,113.81 168.79,109.67 165.42,105.63"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 334 268.5 334 287.5 390 287.5 390 268.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 362 275.5 0 40 8 -\"1.0E-5\" ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label="\"1.0E-5\"",
		pos="362,278",
		rects="334,268.5,390,287.5",
		width=0.77778];
	default2 -> hmmsearch	[_draw_="c 7 -#000000 B 7 345.42 268.53 339.65 265.7 333.09 262.6 327 260 306.12 251.09 282.05 242.98 262.55 236.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 263.34 234.59 255.93 234.88 261.91 239.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 329.5 245.6 0 49 11 -e_threshold ",
		label=e_threshold,
		lp="329.5,247.5",
		pos="e,254.49,234.44 345.42,268.53 339.65,265.7 333.09,262.6 327,260 306.12,251.09 282.05,242.98 262.55,236.91"];
}