digraph workflow {
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		bb="0,0,629.5,278",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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	node [color=black,
		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
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			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 117.5 258 0 84 15 -Workflow Inputs ",
			bb="67.5,215,365.5,270",
			label="Workflow Inputs",
			lheight=0.15,
			lp="117.5,260.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		clan_info	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 76 223.5 76 242.5 137 242.5 137 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 106.5 230.5 0 45 9 -clan_info ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=clan_info,
			pos="106.5,233",
			rects="76,223.5,137,242.5",
			width=0.84722];
		query_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 141 223.5 141 242.5 242 242.5 242 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 191.5 230.5 0 85 15 -query_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=query_sequences,
			pos="191.5,233",
			rects="141,223.5,242,242.5",
			width=1.4028];
		covariance_models	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 246 223.5 246 242.5 357 242.5 357 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 301.5 230.5 0 95 17 -covariance_models ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=covariance_models,
			pos="301.5,233",
			rects="246,223.5,357,242.5",
			width=1.5417];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 100.5 8 100.5 63 208.5 63 208.5 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 154.5 15 0 92 16 -Workflow Outputs ",
			bb="100.5,8,208.5,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="154.5,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		matches	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 125 35.5 125 54.5 184 54.5 184 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154.5 42.5 0 43 7 -matches ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=matches,
			pos="154.5,45",
			rects="125,35.5,184,54.5",
			width=0.81944];
	}
	remove_overlaps	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 80.5 0 99.5 309 99.5 309 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 154.5 87.5 0 293 59 -remove lower scoring overlaps from cmsearch --tblout files. ",
		height=0.27778,
		label="remove lower scoring overlaps from cmsearch --tblout files.",
		pos="154.5,90",
		rects="0,80.5,309,99.5",
		width=4.2917];
	clan_info -> remove_overlaps	[_draw_="c 7 -#000000 B 4 109.36 223.6 117.15 200.72 138.84 137 149.05 107 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 151.29 108.03 151.23 100.61 146.65 106.45 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 168 155.6 0 69 16 -clan_information ",
		label=clan_information,
		lp="168,157.5",
		pos="e,151.72,99.177 109.36,223.6 117.15,200.72 138.84,137 149.05,107"];
	cmsearch	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 204 170.5 204 189.5 501 189.5 501 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 352.5 177.5 0 281 54 -search sequence(s) against a covariance model database ",
		height=0.27778,
		label="search sequence(s) against a covariance model database",
		pos="352.5,180",
		rects="204,170.5,501,189.5",
		width=4.125];
	query_sequences -> cmsearch	[_draw_="c 7 -#000000 B 7 190.43 223.71 189.92 215.91 190.59 204.47 197.5 198 199.82 195.83 203.01 193.92 206.89 192.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 207.43 194.64 213.18 189.95 205.76 190.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 234 200.6 0 73 15 -query_sequences ",
		label=query_sequences,
		lp="234,202.5",
		pos="e,214.6,189.43 190.43,223.71 189.92,215.91 190.59,204.47 197.5,198 199.82,195.83 203.01,193.92 206.89,192.23"];
	covariance_models -> cmsearch	[_draw_="c 7 -#000000 B 7 286.96 223.65 276.86 216.79 266.39 206.8 273.5 198 275.31 195.76 278.56 193.81 282.75 192.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 283.32 194.49 289.17 189.93 281.75 189.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 332.5 200.6 0 118 25 -covariance_model_database ",
		label=covariance_model_database,
		lp="332.5,202.5",
		pos="e,290.6,189.45 286.96,223.65 276.86,216.79 266.39,206.8 273.5,198 275.31,195.76 278.56,193.81 282.75,192.1"];
	remove_overlaps -> matches	[_draw_="c 7 -#000000 B 4 154.5 80.71 154.5 75.59 154.5 68.85 154.5 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 156.95 62.78 154.5 55.78 152.05 62.78 ",
		pos="e,154.5,54.265 154.5,80.709 154.5,75.593 154.5,68.848 154.5,62.666"];
	concatenate_matches	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 191.5 125.5 191.5 144.5 315.5 144.5 315.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 253.5 132.5 0 108 19 -concatenate_matches ",
		height=0.27778,
		label=concatenate_matches,
		pos="253.5,135",
		rects="191.5,125.5,315.5,144.5",
		width=1.7222];
	concatenate_matches -> remove_overlaps	[_draw_="c 7 -#000000 B 4 233.94 125.5 219.03 119.03 198.3 110.02 181.76 102.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 182.8 100.62 175.41 100.08 180.85 105.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 253 110.6 0 79 16 -cmsearch_matches ",
		label=cmsearch_matches,
		lp="253,112.5",
		pos="e,174.02,99.478 233.94,125.5 219.03,119.03 198.3,110.02 181.76,102.84"];
	cmsearch -> concatenate_matches	[_draw_="c 7 -#000000 B 4 332.94 170.5 318.03 164.03 297.3 155.02 280.76 147.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 281.8 145.62 274.41 145.08 279.85 150.12 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 321.5 155.6 0 18 5 -files ",
		label=files,
		lp="321.5,157.5",
		pos="e,273.02,144.48 332.94,170.5 318.03,164.03 297.3,155.02 280.76,147.84"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 382.5 223.5 382.5 242.5 418.5 242.5 418.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 400.5 230.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="400.5,233",
		rects="382.5,223.5,418.5,242.5",
		width=0.5];
	default1 -> cmsearch	[_draw_="c 7 -#000000 B 7 400.57 223.51 400.19 216 398.52 205.14 392.5 198 391.28 196.55 389.9 195.21 388.43 193.99 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 389.85 192 382.67 190.16 387.14 196.08 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 447 200.6 0 97 22 -omit_alignment_section ",
		label=omit_alignment_section,
		lp="447,202.5",
		pos="e,381.41,189.33 400.57,223.51 400.19,216 398.52,205.14 392.5,198 391.28,196.55 389.9,195.21 388.43,193.99"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 486 223.5 486 242.5 527 242.5 527 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 506.5 230.5 0 25 4 -1000 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=1000,
		pos="506.5,233",
		rects="486,223.5,527,242.5",
		width=0.56944];
	default2 -> cmsearch	[_draw_="c 7 -#000000 B 7 506.49 223.62 506 215.75 503.93 204.27 496.5 198 493.79 195.71 489.92 193.72 485.19 191.98 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 485.94 189.65 478.53 189.92 484.49 194.33 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 541 200.6 0 77 17 -search_space_size ",
		label=search_space_size,
		lp="541,202.5",
		pos="e,477.09,189.47 506.49,223.62 506,215.75 503.93,204.27 496.5,198 493.79,195.71 489.92,193.72 485.19,191.98"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 574.5 223.5 574.5 242.5 610.5 242.5 610.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 592.5 230.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="592.5,233",
		rects="574.5,223.5,610.5,242.5",
		width=0.5];
	default3 -> cmsearch	[_draw_="c 7 -#000000 B 7 592.02 223.51 591.09 215.55 588.36 204.01 580.5 198 573.54 192.68 544.24 189 508.85 186.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 509.38 184.05 502.23 186.02 509.05 188.94 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 608.5 200.6 0 42 8 -only_hmm ",
		label=only_hmm,
		lp="608.5,202.5",
		pos="e,500.72,185.92 592.02,223.51 591.09,215.55 588.36,204.01 580.5,198 573.54,192.68 544.24,189 508.85,186.47"];
}