digraph workflow {
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	subgraph cluster_inputs {
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		seqformat	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16.5 268.5 16.5 287.5 83.5 287.5 83.5 268.5 ",
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		prime3	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 150.5 268.5 150.5 287.5 201.5 287.5 201.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 176 275.5 0 35 6 -prime3 ",
			fillcolor="#94DDF4",
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			width=0.70833];
		blastdb	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 293.5 268.5 293.5 287.5 346.5 287.5 346.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 320 275.5 0 37 7 -blastdb ",
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			width=0.73611];
		genomefile	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 460.5 268.5 460.5 287.5 531.5 287.5 531.5 268.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 496 275.5 0 55 10 -genomefile ",
			fillcolor="#94DDF4",
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			label=genomefile,
			pos="496,278",
			rects="460.5,268.5,531.5,287.5",
			width=0.98611];
	}
	subgraph cluster_outputs {
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			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 64 15 0 92 16 -Workflow Outputs ",
			bb="10,8,435,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="64,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
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		trimseqs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 240.5 35.5 240.5 54.5 299.5 54.5 299.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 270 42.5 0 43 8 -trimseqs ",
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			label=trimseqs,
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			width=0.81944];
		report_tsv	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 361 35.5 361 54.5 427 54.5 427 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 394 42.5 0 50 10 -report_tsv ",
			fillcolor="#94DDF4",
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			label=report_tsv,
			pos="394,45",
			rects="361,35.5,427,54.5",
			width=0.91667];
		assemblylog	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 74.5 35.5 74.5 54.5 153.5 54.5 153.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 114 42.5 0 63 11 -assemblylog ",
			fillcolor="#94DDF4",
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			label=assemblylog,
			pos="114,45",
			rects="74.5,35.5,153.5,54.5",
			width=1.0972];
		bamfile	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 303.5 35.5 303.5 54.5 356.5 54.5 356.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 330 42.5 0 37 7 -bamfile ",
			fillcolor="#94DDF4",
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			label=bamfile,
			pos="330,45",
			rects="303.5,35.5,356.5,54.5",
			width=0.73611];
		viral_contigs	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 157.5 35.5 157.5 54.5 236.5 54.5 236.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 197 42.5 0 63 13 -viral_contigs ",
			fillcolor="#94DDF4",
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			label=viral_contigs,
			pos="197,45",
			rects="157.5,35.5,236.5,54.5",
			width=1.0972];
		trimlog	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 18 35.5 18 54.5 70 54.5 70 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 44 42.5 0 36 7 -trimlog ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=trimlog,
			pos="44,45",
			rects="18,35.5,70,54.5",
			width=0.72222];
	}
	alignsrr	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 297.5 215.5 297.5 234.5 350.5 234.5 350.5 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 324 222.5 0 37 8 -alignsrr ",
		height=0.27778,
		label=alignsrr,
		pos="324,225",
		rects="297.5,215.5,350.5,234.5",
		width=0.73611];
	threads -> alignsrr	[_draw_="c 7 -#000000 B 7 372.8 268.66 368.75 261.24 362.06 250.45 354 243 352.46 241.58 350.78 240.23 349.03 238.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 350.53 237.01 343.33 235.27 347.88 241.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377 245.6 0 32 7 -threads ",
		label=threads,
		lp="377,247.5",
		pos="e,342.05,234.45 372.8,268.66 368.75,261.24 362.06,250.45 354,243 352.46,241.58 350.78,240.23 349.03,238.95"];
	bam2seqs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 83.5 170.5 83.5 189.5 150.5 189.5 150.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 117 177.5 0 51 8 -bam2seqs ",
		height=0.27778,
		label=bam2seqs,
		pos="117,180",
		rects="83.5,170.5,150.5,189.5",
		width=0.93056];
	nopaired -> bam2seqs	[_draw_="c 7 -#000000 B 4 117 268.82 117 253.17 117 218.71 117 197.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.45 197.95 117 190.95 114.55 197.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 135.5 223.1 0 37 8 -nopaired ",
		label=nopaired,
		lp="135.5,225",
		pos="e,117,189.44 117,268.82 117,253.17 117,218.71 117,197.91"];
	summarizebam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 364.5 170.5 364.5 189.5 457.5 189.5 457.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 411 177.5 0 77 12 -summarizebam ",
		height=0.27778,
		label=summarizebam,
		pos="411,180",
		rects="364.5,170.5,457.5,189.5",
		width=1.2917];
	accver -> summarizebam	[_draw_="c 7 -#000000 B 4 430.21 268.82 426.77 253.09 419.18 218.4 414.64 197.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 417.06 197.23 413.17 190.92 412.27 198.28 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 436 223.1 0 28 6 -accver ",
		label=accver,
		lp="436,225",
		pos="e,412.85,189.44 430.21,268.82 426.77,253.09 419.18,218.4 414.64,197.63"];
	srr -> alignsrr	[_draw_="c 7 -#000000 B 7 228 268.7 231.22 265.69 235.09 262.43 239 260 254.79 250.21 273.87 242.27 289.96 236.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 290.34 239 296.16 234.39 288.74 234.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 277.5 245.6 0 11 3 -srr ",
		label=srr,
		lp="277.5,247.5",
		pos="e,297.59,233.9 228,268.7 231.22,265.69 235.09,262.43 239,260 254.79,250.21 273.87,242.27 289.96,236.54"];
	seqformat -> bam2seqs	[_draw_="c 7 -#000000 B 7 51.55 268.67 54.22 256.07 60.62 231.83 73 215 78.96 206.9 87.35 199.77 95.2 194.15 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 96.5 196.23 100.93 190.28 93.76 192.17 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 94.5 223.1 0 43 9 -seqformat ",
		label=seqformat,
		lp="94.5,225",
		pos="e,102.19,189.44 51.551,268.67 54.219,256.07 60.621,231.83 73,215 78.955,206.9 87.345,199.77 95.204,194.15"];
	blastdb -> alignsrr	[_draw_="c 7 -#000000 B 4 320.66 268.58 321.21 261.52 322.02 251.24 322.7 242.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 325.13 242.94 323.23 235.77 320.24 242.56 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 337.5 245.6 0 31 7 -blastdb ",
		label=blastdb,
		lp="337.5,247.5",
		pos="e,323.35,234.26 320.66,268.58 321.21,261.52 322.02,251.24 322.7,242.55"];
	genomefile -> summarizebam	[_draw_="c 7 -#000000 B 7 491.02 268.91 483.25 256.6 467.45 232.76 451 215 444.17 207.63 435.81 200.3 428.49 194.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 430.34 192.68 423.33 190.24 427.29 196.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 490.5 223.1 0 47 10 -genomefile ",
		label=genomefile,
		lp="490.5,225",
		pos="e,422.15,189.3 491.02,268.91 483.25,256.6 467.45,232.76 451,215 444.17,207.63 435.81,200.3 428.49,194.34"];
	trim	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 98.5 125.5 98.5 144.5 135.5 144.5 135.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 117 132.5 0 21 4 -trim ",
		height=0.27778,
		label=trim,
		pos="117,135",
		rects="98.5,125.5,135.5,144.5",
		width=0.51389];
	trim -> trimseqs	[_draw_="c 7 -#000000 B 4 131.67 125.56 158.81 109.95 216.98 76.5 248.55 58.34 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 249.44 60.65 254.29 55.04 247 56.4 ",
		pos="e,255.6,54.284 131.67,125.56 158.81,109.95 216.98,76.498 248.55,58.339"];
	trim -> trimlog	[_draw_="c 7 -#000000 B 7 107.94 125.7 100.85 119.03 90.9 109.28 83 100 72.4 87.55 61.61 72.38 54.08 61.3 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 56.2 60.06 50.27 55.61 52.13 62.79 ",
		pos="e,49.425,54.357 107.94,125.7 100.85,119.03 90.902,109.28 83,100 72.4,87.553 61.613,72.385 54.079,61.297"];
	assembly	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 85 80.5 85 99.5 149 99.5 149 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 117 87.5 0 48 8 -assembly ",
		height=0.27778,
		label=assembly,
		pos="117,90",
		rects="85,80.5,149,99.5",
		width=0.88889];
	trim -> assembly	[_draw_="c 7 -#000000 B 4 117 125.71 117 120.59 117 113.85 117 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.45 107.78 117 100.78 114.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 127 110.6 0 20 4 -seqs ",
		label=seqs,
		lp="127,112.5",
		pos="e,117,99.265 117,125.71 117,120.59 117,113.85 117,107.67"];
	summarizebam -> report_tsv	[_draw_="c 7 -#000000 B 4 409.94 170.68 407.18 149.13 399.77 91.17 396.11 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 398.57 62.45 395.25 55.82 393.71 63.07 ",
		pos="e,395.06,54.317 409.94,170.68 407.18,149.13 399.77,91.169 396.11,62.509"];
	assembly -> assemblylog	[_draw_="c 7 -#000000 B 4 116.42 80.71 116.06 75.59 115.59 68.85 115.16 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 117.61 62.59 114.68 55.78 112.73 62.93 ",
		pos="e,114.58,54.265 116.42,80.709 116.06,75.593 115.59,68.848 115.16,62.666"];
	assembly -> viral_contigs	[_draw_="c 7 -#000000 B 4 132.81 80.5 144.53 74.2 160.7 65.51 173.87 58.43 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 174.89 60.67 179.89 55.19 172.57 56.35 ",
		pos="e,181.23,54.478 132.81,80.505 144.53,74.203 160.7,65.514 173.87,58.432"];
	bam2seqs -> trim	[_draw_="c 7 -#000000 B 4 117 170.71 117 165.59 117 158.85 117 152.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 119.45 152.78 117 145.78 114.55 152.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 127 155.6 0 20 4 -seqs ",
		label=seqs,
		lp="127,157.5",
		pos="e,117,144.27 117,170.71 117,165.59 117,158.85 117,152.67"];
	alignsrr -> bamfile	[_draw_="c 7 -#000000 B 10 324.31 215.76 324.6 207.1 325 193.1 325 181 325 181 325 181 325 89 325 80.25 326.03 70.56 327.16 62.6 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 329.58 63 328.24 55.71 324.74 62.24 ",
		pos="e,328.47,54.21 324.31,215.76 324.6,207.1 325,193.1 325,181 325,181 325,181 325,89 325,80.249 326.03,70.563 327.16,62.603"];
	alignsrr -> summarizebam	[_draw_="c 7 -#000000 B 4 341.19 215.5 354.06 209.14 371.85 200.35 386.25 193.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 387.3 195.45 392.49 190.15 385.13 191.05 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 390.5 200.6 0 31 7 -bamfile ",
		label=bamfile,
		lp="390.5,202.5",
		pos="e,393.85,189.48 341.19,215.5 354.06,209.14 371.85,200.35 386.25,193.23"];
	alignsrr -> bam2seqs	[_draw_="c 7 -#000000 B 4 297.78 218.55 262.67 211.26 199.98 198.24 158.44 189.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 159.01 187.22 151.66 188.2 158.01 192.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 254.5 200.6 0 31 7 -bamfile ",
		label=bamfile,
		lp="254.5,202.5",
		pos="e,150.17,187.89 297.78,218.55 262.67,211.26 199.98,198.24 158.44,189.61"];
}