digraph workflow {
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		bb="0,0,1089,278",
		bgcolor="#eeeeee",
		clusterrank=local,
		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
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		height=0,
		label="\N",
		shape=record,
		style=filled,
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 8 215 8 270 1081 270 1081 215 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 58 258 0 84 15 -Workflow Inputs ",
			bb="8,215,1081,270",
			label="Workflow Inputs",
			lheight=0.15,
			lp="58,260.5",
			lwidth=1.17,
			rank=same,
			style=dashed
		];
		min_dom_size	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 447.5 223.5 447.5 242.5 652.5 242.5 652.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 550 230.5 0 189 35 -Threshold for minimum domain length ",
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			label="Threshold for minimum domain length",
			pos="550,233",
			rects="447.5,223.5,652.5,242.5",
			width=2.8472];
		lost_merged	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 16 223.5 16 242.5 246 242.5 246 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 131 230.5 0 214 42 -Filename for Pfam inconsistent domain StIs ",
			fillcolor="#94DDF4",
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			label="Filename for Pfam inconsistent domain StIs",
			pos="131,233",
			rects="16,223.5,246,242.5",
			width=3.1944];
		siftsdir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 657 223.5 657 242.5 839 242.5 839 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 748 230.5 0 166 37 -Directory for storing all SIFTS files ",
			fillcolor="#94DDF4",
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			label="Directory for storing all SIFTS files",
			pos="748,233",
			rects="657,223.5,839,242.5",
			width=2.5278];
		family_idsfile	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 250.5 223.5 250.5 242.5 443.5 242.5 443.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 347 230.5 0 177 38 -File with the family IDs per iteration ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="File with the family IDs per iteration",
			pos="347,233",
			rects="250.5,223.5,443.5,242.5",
			width=2.6806];
		resmapped_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 843 223.5 843 242.5 1073 242.5 1073 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 958 230.5 0 214 42 -Filename for CATH inconsistent domain StIs ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Filename for CATH inconsistent domain StIs",
			pos="958,233",
			rects="843,223.5,1073,242.5",
			width=3.1944];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 464 8 464 63 1002 63 1002 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 518 15 0 92 16 -Workflow Outputs ",
			bb="464,8,1002,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="518,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		cath_domain_posi_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 724.5 35.5 724.5 54.5 993.5 54.5 993.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 859 42.5 0 253 49 -All residue-mapped domain StIs with domain labels ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="All residue-mapped domain StIs with domain labels",
			pos="859,45",
			rects="724.5,35.5,993.5,54.5",
			width=3.7361];
		cath_total_lost_structures	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 472 35.5 472 54.5 720 54.5 720 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 596 42.5 0 232 46 -Obsolete and inconsistent domain StIs together ",
			fillcolor="#94DDF4",
			height=0.27778,
			label="Obsolete and inconsistent domain StIs together",
			pos="596,45",
			rects="472,35.5,720,54.5",
			width=3.4444];
	}
	filter_cath_structures	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 399.5 170.5 399.5 189.5 700.5 189.5 700.5 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 550 177.5 0 285 60 -Filter all structural instances for given CATH superfamilies ",
		height=0.27778,
		label="Filter all structural instances for given CATH superfamilies",
		pos="550,180",
		rects="399.5,170.5,700.5,189.5",
		width=4.1806];
	min_dom_size -> filter_cath_structures	[_draw_="c 7 -#000000 B 4 550 223.58 550 216.52 550 206.24 550 197.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.45 197.78 550 190.78 547.55 197.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 577 200.6 0 54 11 -min_dom_len ",
		label=min_dom_len,
		lp="577,202.5",
		pos="e,550,189.26 550,223.58 550,216.52 550,206.24 550,197.55"];
	collect_lost_instances	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 376.5 80.5 376.5 99.5 723.5 99.5 723.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 550 87.5 0 331 69 -Changes the format for core structural instances (only 1st iteration) ",
		height=0.27778,
		label="Changes the format for core structural instances (only 1st iteration)",
		pos="550,90",
		rects="376.5,80.5,723.5,99.5",
		width=4.8194];
	lost_merged -> collect_lost_instances	[_draw_="c 7 -#000000 B 4 155.96 223.6 227.92 199.39 435.86 129.41 517.01 102.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 517.62 104.48 523.48 99.93 516.06 99.84 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 377.5 155.6 0 27 7 -outfile ",
		label=outfile,
		lp="377.5,157.5",
		pos="e,524.91,99.443 155.96,223.6 227.92,199.39 435.86,129.41 517.01,102.1"];
	resmapping_cath_structs	[_draw_="c 7 -#000000 C 7 -#f3cea1 P 4 601.5 125.5 601.5 144.5 868.5 144.5 868.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 735 132.5 0 251 48 -Mapping of residue numbering from PDB to UniProt ",
		fillcolor="#F3CEA1",
		height=0.27778,
		label="Mapping of residue numbering from PDB to UniProt",
		pos="735,135",
		rects="601.5,125.5,868.5,144.5",
		width=3.7083];
	siftsdir -> resmapping_cath_structs	[_draw_="c 7 -#000000 B 4 746.89 223.82 744.76 208.09 740.06 173.4 737.25 152.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.71 152.55 736.35 145.94 734.86 153.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 751 178.1 0 18 5 -sifts ",
		label=sifts,
		lp="751,180",
		pos="e,736.14,144.44 746.89,223.82 744.76,208.09 740.06,173.4 737.25,152.63"];
	family_idsfile -> filter_cath_structures	[_draw_="c 7 -#000000 B 4 380.52 223.58 415.64 214.76 470.84 200.89 508.64 191.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 508.77 193.88 514.96 189.8 507.57 189.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 500.5 200.6 0 45 10 -track_fams ",
		label=track_fams,
		lp="500.5,202.5",
		pos="e,516.43,189.43 380.52,223.58 415.64,214.76 470.84,200.89 508.64,191.39"];
	add_domain_positions	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 728 80.5 728 99.5 1022 99.5 1022 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 875 87.5 0 278 54 -Add domain position labels to residue-mapped instances ",
		height=0.27778,
		label="Add domain position labels to residue-mapped instances",
		pos="875,90",
		rects="728,80.5,1022,99.5",
		width=4.0833];
	resmapped_file -> add_domain_positions	[_draw_="c 7 -#000000 B 4 953.06 223.6 939.47 200.53 901.43 135.9 883.97 106.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 886.24 105.27 880.58 100.48 882.02 107.76 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 944 155.6 0 56 13 -dom_posi_file ",
		label=dom_posi_file,
		lp="944,157.5",
		pos="e,879.81,99.177 953.06,223.6 939.47,200.53 901.43,135.9 883.97,106.24"];
	filter_cath_structures -> collect_lost_instances	[_draw_="c 7 -#000000 B 4 550 170.56 550 156.14 550 126.48 550 107.73 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 552.45 107.8 550 100.8 547.55 107.8 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 570 133.1 0 40 9 -obs_insta ",
		label=obs_insta,
		lp="570,135",
		pos="e,550,99.284 550,170.56 550,156.14 550,126.48 550,107.73"];
	filter_cath_structures -> resmapping_cath_structs	[_draw_="c 7 -#000000 B 4 586.55 170.5 616.32 163.58 658.48 153.79 690.27 146.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 690.79 148.79 697.05 144.82 689.68 144.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 674 155.6 0 30 9 -flt_files ",
		label=flt_files,
		lp="674,157.5",
		pos="e,698.53,144.48 586.55,170.5 616.32,163.58 658.48,153.79 690.27,146.4"];
	add_domain_positions -> cath_domain_posi_file	[_draw_="c 7 -#000000 B 4 871.92 80.71 869.97 75.47 867.38 68.53 865.04 62.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 867.34 61.39 862.6 55.68 862.75 63.1 ",
		pos="e,862.08,54.265 871.92,80.709 869.97,75.474 867.38,68.534 865.04,62.235"];
	collect_lost_instances -> cath_total_lost_structures	[_draw_="c 7 -#000000 B 4 558.87 80.71 565.23 74.76 573.95 66.61 581.34 59.7 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 582.61 61.87 586.05 55.3 579.27 58.29 ",
		pos="e,587.16,54.265 558.87,80.709 565.23,74.76 573.95,66.609 581.34,59.701"];
	resmapping_cath_structs -> add_domain_positions	[_draw_="c 7 -#000000 B 7 756.55 125.57 770.75 120.17 789.84 113.23 807 108 814.35 105.76 822.21 103.59 829.89 101.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 830.47 103.97 836.64 99.87 829.26 99.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 841 110.6 0 68 15 -resmapped_files ",
		label=resmapped_files,
		lp="841,112.5",
		pos="e,838.11,99.498 756.55,125.57 770.75,120.17 789.84,113.23 807,108 814.35,105.76 822.21,103.59 829.89,101.59"];
	resmapping_cath_structs -> collect_lost_instances	[_draw_="c 7 -#000000 B 4 698.45 125.5 668.68 118.58 626.52 108.79 594.73 101.4 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 595.32 99.02 587.95 99.82 594.21 103.79 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 686.5 110.6 0 55 13 -lost_instance ",
		label=lost_instance,
		lp="686.5,112.5",
		pos="e,586.47,99.478 698.45,125.5 668.68,118.58 626.52,108.79 594.73,101.4"];
}