digraph workflow {
	graph [_draw_="c 9 -#fffffe00 C 7 -#eeeeee P 4 0 0 0 278 821 278 821 0 ",
		bb="0,0,821,278",
		bgcolor="#eeeeee",
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		color=black,
		dpi=96,
		fontsize=10,
		labeljust=left,
		nodesep=0.05,
		ranksep=0.22,
		xdotversion=1.7
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		fillcolor=lightgoldenrodyellow,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=10,
		height=0,
		label="\N",
		shape=record,
		style=filled,
		width=0
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	edge [arrowsize=0.7,
		color=black,
		fontcolor=black,
		fontname=Helvetica,
		fontsize=8
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	subgraph cluster_inputs {
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			bb="114,215,574,270",
			label="Workflow Inputs",
			lheight=0.15,
			lp="164,260.5",
			lwidth=1.17,
			rank=same,
			style=dashed
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		catOutputFileName	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 187.5 223.5 187.5 242.5 298.5 242.5 298.5 223.5 ",
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			width=1.5417];
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 429 230.5 0 27 5 -cores ",
			fillcolor="#94DDF4",
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			label=cores,
			pos="429,233",
			rects="407.5,223.5,450.5,242.5",
			width=0.59722];
		covariance_models	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 454.5 223.5 454.5 242.5 565.5 242.5 565.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 510 230.5 0 95 17 -covariance_models ",
			fillcolor="#94DDF4",
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			label=covariance_models,
			pos="510,233",
			rects="454.5,223.5,565.5,242.5",
			width=1.5417];
		clan_info	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 122.5 223.5 122.5 242.5 183.5 242.5 183.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 153 230.5 0 45 9 -clan_info ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=clan_info,
			pos="153,233",
			rects="122.5,223.5,183.5,242.5",
			width=0.84722];
		query_sequences	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 302.5 223.5 302.5 242.5 403.5 242.5 403.5 223.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 353 230.5 0 85 15 -query_sequences ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=query_sequences,
			pos="353,233",
			rects="302.5,223.5,403.5,242.5",
			width=1.4028];
	}
	subgraph cluster_outputs {
		graph [_draw_="S 6 -dashed c 7 -#000000 C 7 -#eeeeee P 4 113 8 113 63 505 63 505 8 ",
			_ldraw_="F 10 11 -Times-Roman c 7 -#000000 T 167 15 0 92 16 -Workflow Outputs ",
			bb="113,8,505,63",
			label="Workflow Outputs",
			labelloc=b,
			lheight=0.15,
			lp="167,17.5",
			lwidth=1.28,
			rank=same,
			style=dashed
		];
		deoverlapped_matches	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 121.5 35.5 121.5 54.5 252.5 54.5 252.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 187 42.5 0 115 20 -deoverlapped_matches ",
			fillcolor="#94DDF4",
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			label=deoverlapped_matches,
			pos="187,45",
			rects="121.5,35.5,252.5,54.5",
			width=1.8194];
		cmsearch_matches	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 385.5 35.5 385.5 54.5 496.5 54.5 496.5 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 441 42.5 0 95 16 -cmsearch_matches ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=cmsearch_matches,
			pos="441,45",
			rects="385.5,35.5,496.5,54.5",
			width=1.5417];
		concatenate_matches	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 257 35.5 257 54.5 381 54.5 381 35.5 ",
			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 319 42.5 0 108 19 -concatenate_matches ",
			fillcolor="#94DDF4",
			height=0.27778,
			label=concatenate_matches,
			pos="319,45",
			rects="257,35.5,381,54.5",
			width=1.7222];
	}
	run_concatenate_matches	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 169.5 125.5 169.5 144.5 424.5 144.5 424.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 297 132.5 0 239 51 -Redirecting Multiple Files Contain in a Single File ",
		height=0.27778,
		label="Redirecting Multiple Files Contain in a Single File",
		pos="297,135",
		rects="169.5,125.5,424.5,144.5",
		width=3.5417];
	catOutputFileName -> run_concatenate_matches	[_draw_="c 7 -#000000 B 7 241.37 223.73 239.35 211.19 237.26 187.05 247 170 252.17 160.96 260.84 153.82 269.52 148.46 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 270.54 150.7 275.43 145.13 268.13 146.44 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 279.5 178.1 0 65 14 -outputFileName ",
		label=outputFileName,
		lp="279.5,180",
		pos="e,276.74,144.38 241.37,223.73 239.35,211.19 237.26,187.05 247,170 252.17,160.96 260.84,153.82 269.52,148.46"];
	cmsearch	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 314 170.5 314 189.5 612 189.5 612 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 463 177.5 0 282 54 -Search sequence(s) against a covariance model database ",
		height=0.27778,
		label="Search sequence(s) against a covariance model database",
		pos="463,180",
		rects="314,170.5,612,189.5",
		width=4.1389];
	cores -> cmsearch	[_draw_="c 7 -#000000 B 7 431.23 223.61 433.43 216.36 437.3 205.85 443 198 443.74 196.99 444.55 195.99 445.4 195.03 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 447.07 196.83 450.42 190.21 443.67 193.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 451 200.6 0 16 3 -cpu ",
		label=cpu,
		lp="451,202.5",
		pos="e,451.51,189.16 431.23,223.61 433.43,216.36 437.3,205.85 443,198 443.74,196.99 444.55,195.99 445.4,195.03"];
	covariance_models -> cmsearch	[_draw_="c 7 -#000000 B 7 489.59 223.69 482.09 219.68 474.17 214.17 469 207 467.04 204.29 465.71 201.03 464.81 197.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 467.23 197.35 463.56 190.9 462.4 198.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 528 200.6 0 118 25 -covariance_model_database ",
		label=covariance_model_database,
		lp="528,202.5",
		pos="e,463.29,189.41 489.59,223.69 482.09,219.68 474.17,214.17 469,207 467.04,204.29 465.71,201.03 464.81,197.76"];
	remove_overlaps	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 0 80.5 0 99.5 312 99.5 312 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 156 87.5 0 296 59 -Remove lower scoring overlaps from cmsearch --tblout files. ",
		height=0.27778,
		label="Remove lower scoring overlaps from cmsearch --tblout files.",
		pos="156,90",
		rects="0,80.5,312,99.5",
		width=4.3333];
	clan_info -> remove_overlaps	[_draw_="c 7 -#000000 B 4 153.18 223.6 153.66 200.82 155.01 137.55 155.65 107.39 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 158.09 107.74 155.79 100.69 153.2 107.64 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 188.5 155.6 0 69 16 -clan_information ",
		label=clan_information,
		lp="188.5,157.5",
		pos="e,155.83,99.177 153.18,223.6 153.66,200.82 155.01,137.55 155.65,107.39"];
	query_sequences -> cmsearch	[_draw_="c 7 -#000000 B 7 353.08 223.71 353.63 215.9 355.73 204.46 363 198 365.71 195.59 370.15 193.51 375.68 191.72 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 376.3 194.1 382.39 189.87 374.99 189.37 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 399.5 200.6 0 73 15 -query_sequences ",
		label=query_sequences,
		lp="399.5,202.5",
		pos="e,383.85,189.46 353.08,223.71 353.63,215.9 355.73,204.46 363,198 365.71,195.59 370.15,193.51 375.68,191.72"];
	cmsearch -> cmsearch_matches	[_draw_="c 7 -#000000 B 4 461.62 170.68 458.06 149.13 448.47 91.17 443.73 62.51 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 446.18 62.32 442.62 55.81 441.35 63.12 ",
		pos="e,442.38,54.317 461.62,170.68 458.06,149.13 448.47,91.169 443.73,62.509"];
	cmsearch -> run_concatenate_matches	[_draw_="c 7 -#000000 B 4 430.2 170.5 403.72 163.64 366.3 153.95 337.87 146.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 338.58 144.24 331.19 144.86 337.36 148.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 403 155.6 0 18 5 -files ",
		label=files,
		lp="403,157.5",
		pos="e,329.73,144.48 430.2,170.5 403.72,163.64 366.3,153.95 337.87,146.59"];
	run_concatenate_matches -> concatenate_matches	[_draw_="c 7 -#000000 B 7 306.11 125.75 308.41 123.18 310.62 120.18 312 117 319.62 99.51 320.6 77.36 320.18 62.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 322.64 62.67 319.85 55.8 317.75 62.91 ",
		pos="e,319.78,54.284 306.11,125.75 308.41,123.18 310.62,120.18 312,117 319.62,99.507 320.6,77.361 320.18,62.494"];
	run_concatenate_matches -> remove_overlaps	[_draw_="c 7 -#000000 B 7 265.58 125.52 256.05 122.87 245.58 119.89 236 117 220.43 112.3 203.26 106.77 188.84 102.02 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 189.99 99.82 182.57 99.95 188.45 104.47 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 275.5 110.6 0 79 16 -cmsearch_matches ",
		label=cmsearch_matches,
		lp="275.5,112.5",
		pos="e,181.14,99.472 265.58,125.52 256.05,122.87 245.58,119.89 236,117 220.43,112.3 203.26,106.77 188.84,102.02"];
	remove_overlaps -> deoverlapped_matches	[_draw_="c 7 -#000000 B 4 161.98 80.71 166.01 75.12 171.44 67.58 176.22 60.96 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 178.05 62.6 180.16 55.49 174.08 59.74 ",
		pos="e,181.04,54.265 161.98,80.709 166.01,75.117 171.44,67.579 176.22,60.957"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 582 223.5 582 242.5 618 242.5 618 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 600 230.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="600,233",
		rects="582,223.5,618,242.5",
		width=0.5];
	default1 -> cmsearch	[_draw_="c 7 -#000000 B 7 598.41 223.56 596.45 215.63 592.3 204.12 584 198 580.56 195.47 575.22 193.31 568.65 191.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 569.26 189.1 561.88 189.82 568.1 193.86 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 612 200.6 0 42 8 -only_hmm ",
		label=only_hmm,
		lp="612,202.5",
		pos="e,560.41,189.46 598.41,223.56 596.45,215.63 592.3,204.12 584,198 580.56,195.47 575.22,193.31 568.65,191.47"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 622.5 223.5 622.5 242.5 663.5 242.5 663.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 643 230.5 0 25 4 -1000 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=1000,
		pos="643,233",
		rects="622.5,223.5,663.5,242.5",
		width=0.56944];
	default2 -> cmsearch	[_draw_="c 7 -#000000 B 7 643.28 223.62 643.05 215.74 641.34 204.26 634 198 630.59 195.1 619.38 192.62 604.21 190.53 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 604.69 188.12 597.43 189.66 604.07 192.98 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 677.5 200.6 0 77 17 -search_space_size ",
		label=search_space_size,
		lp="677.5,202.5",
		pos="e,595.93,189.47 643.28,223.62 643.05,215.74 641.34,204.26 634,198 630.59,195.1 619.38,192.62 604.21,190.53"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 711 223.5 711 242.5 747 242.5 747 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 729 230.5 0 20 4 -true ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=true,
		pos="729,233",
		rects="711,223.5,747,242.5",
		width=0.5];
	default3 -> cmsearch	[_draw_="c 7 -#000000 B 7 728.57 223.8 727.67 215.82 724.98 204.05 717 198 708.14 191.27 666.94 187.21 620.22 184.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 620.38 182.31 613.27 184.4 620.13 187.2 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 772.5 200.6 0 97 22 -omit_alignment_section ",
		label=omit_alignment_section,
		lp="772.5,202.5",
		pos="e,611.75,184.33 728.57,223.8 727.67,215.82 724.98,204.05 717,198 708.14,191.27 666.94,187.21 620.22,184.75"];
}