digraph workflow {
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			pos="231,233",
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		transrate_output_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 790 35.5 790 54.5 906 54.5 906 35.5 ",
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			_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1229 42.5 0 118 22 -reverse_reads_unpaired ",
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			fillcolor="#94DDF4",
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			label=raw_html_report,
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		assembly_output_dir	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 442.5 35.5 442.5 54.5 561.5 54.5 561.5 35.5 ",
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			fillcolor="#94DDF4",
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			label=raw_qc_report,
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			rects="238,35.5,324,54.5",
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		trimmomatic_log_file	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1300.5 35.5 1300.5 54.5 1421.5 54.5 1421.5 35.5 ",
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			fillcolor="#94DDF4",
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		forward_reads_unpaired	[_draw_="c 7 -#000000 C 7 -#94ddf4 P 4 1426 35.5 1426 54.5 1560 54.5 1560 35.5 ",
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			width=1.8611];
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	filter_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 959.5 170.5 959.5 189.5 1298.5 189.5 1298.5 170.5 ",
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		label="Trimmomatic - A flexible read trimming tool for Illumina NGS data",
		pos="1129,180",
		rects="959.5,170.5,1298.5,189.5",
		width=4.7083];
	reverse_reads -> filter_reads	[_draw_="c 7 -#000000 B 4 1114.81 223.58 1117.18 216.45 1120.66 206.02 1123.58 197.27 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1125.88 198.12 1125.77 190.7 1121.23 196.57 ",
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		label=reads2,
		lp="1137.5,202.5",
		pos="e,1126.2,189.26 1114.8,223.58 1117.2,216.45 1120.7,206.02 1123.6,197.27"];
	run_assembly	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 348.5 125.5 348.5 144.5 697.5 144.5 697.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 523 132.5 0 333 66 -Trinity assembles transcript sequences from Illumina RNA-Seq data. ",
		height=0.27778,
		label="Trinity assembles transcript sequences from Illumina RNA-Seq data.",
		pos="523,135",
		rects="348.5,125.5,697.5,144.5",
		width=4.8472];
	trinity_seq_type -> run_assembly	[_draw_="c 7 -#000000 B 7 402.09 223.58 413.11 210.85 435.43 186.45 458 170 469.65 161.51 483.71 153.88 495.77 148.01 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 496.71 150.27 501.99 145.06 494.61 145.85 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 490 178.1 0 64 16 -trinity_seq_type ",
		label=trinity_seq_type,
		lp="490,180",
		pos="e,503.35,144.42 402.09,223.58 413.11,210.85 435.43,186.45 458,170 469.65,161.51 483.71,153.88 495.77,148.01"];
	trimmomatic_slidingWindow -> filter_reads	[_draw_="c 7 -#000000 B 4 1233.36 223.58 1212.64 215.13 1180.57 202.04 1157.44 192.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1158.48 190.38 1151.07 190.01 1156.63 194.92 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1220.5 200.6 0 59 13 -slidingwindow ",
		label=slidingwindow,
		lp="1220.5,202.5",
		pos="e,1149.7,189.43 1233.4,223.58 1212.6,215.13 1180.6,202.04 1157.4,192.61"];
	end_mode -> filter_reads	[_draw_="c 7 -#000000 B 10 1367.71 223.55 1356.4 220.75 1343.67 217.66 1332 215 1296.14 206.82 1287.24 204.32 1251 198 1235.84 195.36 1219.56 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1204.7 188.25 1197.43 189.7 1204.02 193.1 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1318.5 200.6 0 43 8 -end_mode ",
		label=end_mode,
		lp="1318.5,202.5",
		pos="e,1195.9,189.49 1367.7,223.55 1356.4,220.75 1343.7,217.66 1332,215 1296.1,206.82 1287.2,204.32 1251,198 1235.8,195.36 1219.6,192.86 \
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	generate_raw_stats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 51.5 80.5 51.5 99.5 318.5 99.5 318.5 80.5 ",
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		height=0.27778,
		label="FastQC - A high throughtput sequence analyses QC.",
		pos="185,90",
		rects="51.5,80.5,318.5,99.5",
		width=3.7083];
	read_files -> generate_raw_stats	[_draw_="c 7 -#000000 B 4 74.97 223.6 94.28 200.33 148.65 134.8 172.98 105.49 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 174.66 107.29 177.25 100.34 170.89 104.16 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 150.5 155.6 0 33 8 -in_fastq ",
		label=in_fastq,
		lp="150.5,157.5",
		pos="e,178.21,99.177 74.968,223.6 94.279,200.33 148.65,134.8 172.98,105.49"];
	trinity_cpu -> run_assembly	[_draw_="c 7 -#000000 B 4 523 223.82 523 208.17 523 173.71 523 152.91 ",
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		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 544.5 178.1 0 43 11 -trinity_cpu ",
		label=trinity_cpu,
		lp="544.5,180",
		pos="e,523,144.44 523,223.82 523,208.17 523,173.71 523,152.91"];
	trinity_max_mem -> run_assembly	[_draw_="c 7 -#000000 B 4 685.52 223.65 654.09 206.7 582.68 168.19 545.88 148.34 ",
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		label=trinity_max_mem,
		lp="654.5,180",
		pos="e,538.58,144.4 685.52,223.65 654.09,206.7 582.68,168.19 545.88,148.34"];
	trinity_ss_lib_type -> run_assembly	[_draw_="c 7 -#000000 B 7 245.85 223.55 269.65 210.35 318.13 184.79 362 170 393.3 159.45 429.17 151.49 459.1 145.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 459.44 148.37 465.89 144.71 458.56 143.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 398 178.1 0 72 19 -trinity_ss_lib_type ",
		label=trinity_ss_lib_type,
		lp="398,180",
		pos="e,467.37,144.44 245.85,223.55 269.65,210.35 318.13,184.79 362,170 393.3,159.45 429.17,151.49 459.1,145.94"];
	trimmomatic_phred -> filter_reads	[_draw_="c 7 -#000000 B 7 894.56 223.53 905.02 220.59 916.99 217.43 928 215 972.04 205.26 1022.04 196.8 1061.16 190.75 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1061.29 193.2 1067.84 189.72 1060.54 188.36 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1027.5 200.6 0 25 5 -phred ",
		label=phred,
		lp="1027.5,202.5",
		pos="e,1069.3,189.49 894.56,223.53 905.02,220.59 916.99,217.43 928,215 972.04,205.26 1022,196.8 1061.2,190.75"];
	forward_reads -> filter_reads	[_draw_="c 7 -#000000 B 4 1011.28 223.58 1034.96 215.01 1071.78 201.7 1097.94 192.24 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1098.51 194.63 1104.26 189.95 1096.84 190.03 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1093.5 200.6 0 29 6 -reads1 ",
		label=reads1,
		lp="1093.5,202.5",
		pos="e,1105.7,189.43 1011.3,223.58 1035,215.01 1071.8,201.7 1097.9,192.24"];
	generate_filtered_stats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 509.5 80.5 509.5 99.5 776.5 99.5 776.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 643 87.5 0 251 49 -FastQC - A high throughtput sequence analyses QC. ",
		height=0.27778,
		label="FastQC - A high throughtput sequence analyses QC.",
		pos="643,90",
		rects="509.5,80.5,776.5,99.5",
		width=3.7083];
	generate_filtered_stats -> filtered_html_report	[_draw_="c 7 -#000000 B 4 659.99 80.5 672.71 74.14 690.3 65.35 704.53 58.23 ",
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		pos="e,712.04,54.478 659.99,80.505 672.71,74.144 690.3,65.351 704.53,58.233"];
	generate_filtered_stats -> filtered_qc_report	[_draw_="c 7 -#000000 B 4 637.99 80.71 634.68 75.24 630.24 67.9 626.3 61.38 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 628.5 60.28 622.78 55.56 624.31 62.82 ",
		pos="e,622,54.265 637.99,80.709 634.68,75.236 630.24,67.899 626.3,61.381"];
	evaluate_contigs	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 780.5 80.5 780.5 99.5 1115.5 99.5 1115.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 948 87.5 0 319 65 -Transrate - A de-novo transcriptome assembly evaluation facility. ",
		height=0.27778,
		label="Transrate - A de-novo transcriptome assembly evaluation facility.",
		pos="948,90",
		rects="780.5,80.5,1115.5,99.5",
		width=4.6528];
	evaluate_contigs -> transrate_output_dir	[_draw_="c 7 -#000000 B 4 928.24 80.5 913.18 74.03 892.24 65.02 875.53 57.84 ",
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		pos="e,867.72,54.478 928.24,80.505 913.18,74.026 892.24,65.024 875.53,57.84"];
	filter_reads -> reverse_reads_paired	[_draw_="c 7 -#000000 B 10 1129.09 170.65 1129.15 149.23 1128.12 93.11 1116 80 1091.33 53.3 1071.37 71.38 1036 63 1027.57 61 1018.56 58.73 \
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		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1010.86 54.21 1003.47 54.81 1009.62 58.95 ",
		pos="e,1002,54.422 1129.1,170.65 1129.2,149.23 1128.1,93.113 1116,80 1091.3,53.304 1071.4,71.379 1036,63 1027.6,61.003 1018.6,58.734 \
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	filter_reads -> forward_reads_paired	[_draw_="c 7 -#000000 B 7 1131.08 170.61 1135.32 151.71 1143.22 104.82 1127 71 1124.95 66.72 1121.77 62.91 1118.25 59.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1119.84 57.78 1112.86 55.28 1116.76 61.59 ",
		pos="e,1111.7,54.333 1131.1,170.61 1135.3,151.71 1143.2,104.82 1127,71 1124.9,66.721 1121.8,62.913 1118.2,59.638"];
	filter_reads -> reverse_reads_unpaired	[_draw_="c 7 -#000000 B 4 1135.26 170.68 1151.74 148.75 1196.56 89.15 1217.69 61.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1219.59 62.59 1221.84 55.53 1215.67 59.65 ",
		pos="e,1222.7,54.317 1135.3,170.68 1151.7,148.75 1196.6,89.151 1217.7,61.047"];
	filter_reads -> trimmomatic_log_file	[_draw_="c 7 -#000000 B 4 1143.51 170.68 1182.89 148.11 1291.91 85.61 1338.94 58.65 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1340.03 60.85 1344.88 55.24 1337.59 56.6 ",
		pos="e,1346.2,54.488 1143.5,170.68 1182.9,148.11 1291.9,85.607 1338.9,58.647"];
	filter_reads -> forward_reads_unpaired	[_draw_="c 7 -#000000 B 4 1152.05 170.58 1215.1 147.54 1390.49 83.46 1462.02 57.32 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1462.66 59.69 1468.4 54.99 1460.98 55.09 ",
		pos="e,1469.8,54.47 1152,170.58 1215.1,147.54 1390.5,83.456 1462,57.318"];
	filter_reads -> generate_filtered_stats	[_draw_="c 7 -#000000 B 7 1081.64 170.55 1066.43 167.83 1049.5 164.79 1034 162 913.79 140.33 772.83 114.67 697.33 100.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 698.15 98.57 690.83 99.73 697.27 103.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 954.5 133.1 0 33 8 -in_fastq ",
		label=in_fastq,
		lp="954.5,135",
		pos="e,689.34,99.454 1081.6,170.55 1066.4,167.83 1049.5,164.79 1034,162 913.79,140.33 772.83,114.67 697.33,100.91"];
	filter_reads -> evaluate_contigs	[_draw_="c 7 -#000000 B 10 1094.06 170.58 1084.27 168.03 1073.67 165.08 1064 162 1043.63 155.51 1037.7 155.36 1019 145 998.28 133.52 976.97 \
116.48 963.17 104.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 965.06 103.02 958.18 100.26 961.84 106.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1041 133.1 0 44 11 -right_fastq ",
		label=right_fastq,
		lp="1041,135",
		pos="e,957.04,99.265 1094.1,170.58 1084.3,168.03 1073.7,165.08 1064,162 1043.6,155.51 1037.7,155.36 1019,145 998.28,133.52 976.97,116.48 \
963.17,104.62"];
	filter_reads -> evaluate_contigs	[_draw_="c 7 -#000000 B 10 1115.64 170.66 1105.52 164.12 1091.44 154.56 1080 145 1070.35 136.94 1070.78 131.46 1060 125 1042.23 114.35 1020.86 \
106.79 1001.56 101.55 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1002.3 99.21 994.9 99.82 1001.07 103.95 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1099.5 133.1 0 39 10 -left_fastq ",
		label=left_fastq,
		lp="1099.5,135",
		pos="e,993.44,99.441 1115.6,170.66 1105.5,164.12 1091.4,154.56 1080,145 1070.4,136.94 1070.8,131.46 1060,125 1042.2,114.35 1020.9,106.79 \
1001.6,101.55"];
	filter_reads -> run_assembly	[_draw_="c 7 -#000000 B 7 959.58 177.13 877.43 175.04 777.41 170.74 688 162 650.22 158.31 607.93 151.59 575.63 145.91 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 576.45 143.57 569.13 144.76 575.59 148.39 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 711 155.6 0 46 11 -right_reads ",
		label=right_reads,
		lp="711,157.5",
		pos="e,567.64,144.49 959.58,177.13 877.43,175.04 777.41,170.74 688,162 650.22,158.31 607.93,151.59 575.63,145.91"];
	filter_reads -> run_assembly	[_draw_="c 7 -#000000 B 10 959.78 175.98 901.39 173.58 835.68 169.36 776 162 755.76 159.5 751.2 155.84 731 153 709.27 149.95 686.18 147.39 \
663.59 145.26 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 664 142.84 656.8 144.64 663.55 147.72 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 796.5 155.6 0 41 10 -left_reads ",
		label=left_reads,
		lp="796.5,157.5",
		pos="e,655.29,144.5 959.78,175.98 901.39,173.58 835.68,169.36 776,162 755.76,159.5 751.2,155.84 731,153 709.27,149.95 686.18,147.39 663.59,\
145.26"];
	generate_raw_stats -> raw_html_report	[_draw_="c 7 -#000000 B 4 185 80.71 185 75.59 185 68.85 185 62.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 187.45 62.78 185 55.78 182.55 62.78 ",
		pos="e,185,54.265 185,80.709 185,75.593 185,68.848 185,62.666"];
	generate_raw_stats -> raw_qc_report	[_draw_="c 7 -#000000 B 4 203.97 80.5 218.43 74.03 238.53 65.02 254.57 57.84 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 255.3 60.19 260.69 55.1 253.3 55.72 ",
		pos="e,262.07,54.478 203.97,80.505 218.43,74.026 238.53,65.024 254.57,57.84"];
	run_assembly -> assembled_contigs	[_draw_="c 7 -#000000 B 4 509.58 125.56 484.95 110.08 432.42 77.06 403.37 58.8 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 404.69 56.74 397.46 55.09 402.08 60.89 ",
		pos="e,396.18,54.284 509.58,125.56 484.95,110.08 432.42,77.061 403.37,58.802"];
	run_assembly -> assembly_output_dir	[_draw_="c 7 -#000000 B 7 518.79 125.55 515.61 118.8 511.39 109.01 509 100 505.73 87.7 503.97 73.41 503.03 62.62 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 505.47 62.49 502.51 55.69 500.59 62.85 ",
		pos="e,502.39,54.179 518.79,125.55 515.61,118.8 511.39,109.01 509,100 505.73,87.705 503.97,73.413 503.03,62.622"];
	run_assembly -> evaluate_contigs	[_draw_="c 7 -#000000 B 4 606.97 125.5 678.71 118.25 781.76 107.82 855.78 100.33 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 855.98 102.77 862.7 99.63 855.49 97.9 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 789.5 110.6 0 33 8 -in_fasta ",
		label=in_fasta,
		lp="789.5,112.5",
		pos="e,864.21,99.478 606.97,125.5 678.71,118.25 781.76,107.82 855.78,100.33"];
	default1	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1482.5 223.5 1482.5 242.5 1505.5 242.5 1505.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1494 230.5 0 7 1 -3 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=3,
		pos="1494,233",
		rects="1482.5,223.5,1505.5,242.5",
		width=0.31944];
	default1 -> filter_reads	[_draw_="c 7 -#000000 B 7 1486.65 223.51 1483.41 220.32 1479.35 216.98 1475 215 1444.46 201.07 1375.14 192.82 1306.51 187.95 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1306.8 185.52 1299.65 187.48 1306.47 190.41 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1463.5 200.6 0 31 7 -leading ",
		label=leading,
		lp="1463.5,202.5",
		pos="e,1298.1,187.38 1486.7,223.51 1483.4,220.32 1479.3,216.98 1475,215 1444.5,201.07 1375.1,192.82 1306.5,187.95"];
	default2	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1509.5 223.5 1509.5 242.5 1532.5 242.5 1532.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1521 230.5 0 7 1 -3 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=3,
		pos="1521,233",
		rects="1509.5,223.5,1532.5,242.5",
		width=0.31944];
	default2 -> filter_reads	[_draw_="c 7 -#000000 B 7 1514.51 223.8 1507.19 215.32 1494.43 202.68 1480 198 1447.59 187.48 1376.63 182.91 1306.93 181.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1307.01 178.64 1299.96 180.92 1306.89 183.54 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1510.5 200.6 0 29 8 -trailing ",
		label=trailing,
		lp="1510.5,202.5",
		pos="e,1298.4,180.88 1514.5,223.8 1507.2,215.32 1494.4,202.68 1480,198 1447.6,187.48 1376.6,182.91 1306.9,181.09"];
	default3	[_draw_="c 7 -#000000 C 7 -#d5aefc P 4 1541.5 223.5 1541.5 242.5 1576.5 242.5 1576.5 223.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1559 230.5 0 19 3 -100 ",
		fillcolor="#D5AEFC",
		height=0.27778,
		label=100,
		pos="1559,233",
		rects="1541.5,223.5,1576.5,242.5",
		width=0.48611];
	default3 -> filter_reads	[_draw_="c 7 -#000000 B 7 1553.62 223.51 1547.9 215.32 1538.01 203.39 1526 198 1505.45 188.79 1402.59 184.55 1306.73 182.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1306.92 180.16 1299.88 182.47 1306.83 185.06 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1552 200.6 0 28 6 -minlen ",
		label=minlen,
		lp="1552,202.5",
		pos="e,1298.4,182.44 1553.6,223.51 1547.9,215.32 1538,203.39 1526,198 1505.5,188.79 1402.6,184.55 1306.7,182.61"];
}