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	nthreads -> sort_dedup_bams	[_draw_="c 7 -#000000 B 22 926.89 628.81 930.15 618.84 935 601.4 935 586 935 586 935 586 935 381.5 935 367.16 934.14 361.99 942 350 945.31 \
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	nthreads -> sam2bam	[_draw_="c 7 -#000000 B 7 908.11 628.65 885.61 616.81 847.05 596.39 846 595 837.86 584.24 835.04 569.04 834.15 557.5 ",
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	nthreads -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 22 923.43 628.68 922.41 614.26 920.07 583.7 917 558 913.11 525.42 915.65 516.36 906 485 902.37 473.22 897.3 471.87 \
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	nthreads -> sort_bams	[_draw_="c 7 -#000000 B 7 917.94 628.86 908.88 616.27 891.92 591.03 883 567 879.4 557.3 875.03 530.55 872.39 512.8 ",
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	nthreads -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 910.68 628.67 904.85 625.42 897.8 622 891 620 890.08 619.73 673.33 598.78 581.43 589.9 ",
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		height=0.27778,
		label=filtered2sorted,
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	nthreads -> filtered2sorted	[_draw_="c 7 -#000000 B 10 929.32 628.84 932.34 624.04 936.09 617.79 939 612 957.58 575.06 984.07 472.21 1010 440 1016.8 431.56 1026.23 424.33 \
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		width=1.6528];
	input_fastq_read1_files -> extract_basename_1	[_draw_="c 7 -#000000 B 7 347.6 647.46 360.97 655.97 383.03 668.72 404 675 494.27 702.02 603.63 708.52 672.53 709.61 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 672.18 712.05 679.21 709.69 672.24 707.15 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 494 685.6 0 38 10 -input_file ",
		label=input_file,
		lp="494,687.5",
		pos="e,680.72,709.71 347.6,647.46 360.97,655.97 383.03,668.72 404,675 494.27,702.02 603.63,708.52 672.53,709.61"];
	input_fastq_read1_files -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 346.72 628.77 358.75 620.77 378.29 608.98 397 603 430.72 592.22 470.84 588.15 500.16 586.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 500.11 589.13 507 586.38 499.9 584.23 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 442.5 605.6 0 91 22 -input_fastq_read1_file ",
		label=input_fastq_read1_file,
		lp="442.5,607.5",
		pos="e,508.51,586.31 346.72,628.77 358.75,620.77 378.29,608.98 397,603 430.72,592.22 470.84,588.15 500.16,586.68"];
	genome_ref_first_index_file -> "bowtie-pe"	[_draw_="c 7 -#000000 B 7 482.27 628.66 484.74 621.04 489.38 609.93 497 603 498.94 601.24 501.08 599.65 503.34 598.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 504.1 600.6 509.09 595.11 501.76 596.29 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 552.5 605.6 0 111 27 -genome_ref_first_index_file ",
		label=genome_ref_first_index_file,
		lp="552.5,607.5",
		pos="e,510.42,594.39 482.27,628.66 484.74,621.04 489.38,609.93 497,603 498.94,601.24 501.08,599.65 503.34,598.22"];
	mapped_filtered_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 879.5 80.5 879.5 99.5 1040.5 99.5 1040.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 960 87.5 0 145 27 -mapped_filtered_reads_count ",
		height=0.27778,
		label=mapped_filtered_reads_count,
		pos="960,90",
		rects="879.5,80.5,1040.5,99.5",
		width=2.2361];
	sort_dedup_bams -> mapped_filtered_reads_count	[_draw_="c 7 -#000000 B 4 960 125.71 960 120.59 960 113.85 960 107.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 962.45 107.78 960 100.78 957.55 107.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 990 110.6 0 60 14 -input_bam_file ",
		label=input_bam_file,
		lp="990,112.5",
		pos="e,960,99.265 960,125.71 960,120.59 960,113.85 960,107.67"];
	index_dedup_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1044.5 80.5 1044.5 99.5 1155.5 99.5 1155.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1100 87.5 0 95 16 -index_dedup_bams ",
		height=0.27778,
		label=index_dedup_bams,
		pos="1100,90",
		rects="1044.5,80.5,1155.5,99.5",
		width=1.5417];
	sort_dedup_bams -> index_dedup_bams	[_draw_="c 7 -#000000 B 7 991.43 125.54 1000.95 122.9 1011.43 119.91 1021 117 1036.24 112.37 1053.02 106.9 1067.18 102.18 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1067.89 104.52 1073.75 99.97 1066.34 99.88 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1068 110.6 0 38 10 -input_file ",
		label=input_file,
		lp="1068,112.5",
		pos="e,1075.2,99.492 991.43,125.54 1001,122.9 1011.4,119.91 1021,117 1036.2,112.37 1053,106.9 1067.2,102.18"];
	percent_mitochondrial_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 454 80.5 454 99.5 612 99.5 612 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 533 87.5 0 142 27 -percent_mitochondrial_reads ",
		height=0.27778,
		label=percent_mitochondrial_reads,
		pos="533,90",
		rects="454,80.5,612,99.5",
		width=2.1944];
	percent_mitochondrial_reads -> output_percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 502.97 80.5 478.92 73.7 445.05 64.12 419.09 56.78 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 419.83 54.44 412.42 54.89 418.49 59.15 ",
		pos="e,410.97,54.478 502.97,80.505 478.92,73.702 445.05,64.118 419.09,56.776"];
	remove_duplicates	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 842 170.5 842 189.5 952 189.5 952 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 897 177.5 0 94 17 -remove_duplicates ",
		height=0.27778,
		label=remove_duplicates,
		pos="897,180",
		rects="842,170.5,952,189.5",
		width=1.5278];
	remove_duplicates -> sort_dedup_bams	[_draw_="c 7 -#000000 B 7 902.01 170.8 905.81 165.16 911.47 157.84 918 153 920.42 151.21 923.05 149.57 925.78 148.09 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 926.57 150.43 931.79 145.16 924.42 146.02 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 937 155.6 0 38 10 -input_file ",
		label=input_file,
		lp="937,157.5",
		pos="e,933.15,144.49 902.01,170.8 905.81,165.16 911.47,157.84 918,153 920.42,151.21 923.05,149.57 925.78,148.09"];
	mapped_reads_count	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 172.5 80.5 172.5 99.5 293.5 99.5 293.5 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 233 87.5 0 105 18 -mapped_reads_count ",
		height=0.27778,
		label=mapped_reads_count,
		pos="233,90",
		rects="172.5,80.5,293.5,99.5",
		width=1.6806];
	mapped_reads_count -> output_read_count_mapped	[_draw_="c 7 -#000000 B 4 205.14 80.5 182.93 73.73 151.68 64.2 127.65 56.87 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 128.66 54.62 121.25 54.92 127.23 59.3 ",
		pos="e,119.8,54.478 205.14,80.505 182.93,73.732 151.68,64.201 127.65,56.872"];
	"preseq-c-curve"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1158.5 125.5 1158.5 144.5 1247.5 144.5 1247.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1203 132.5 0 73 14 -preseq-c-curve ",
		height=0.27778,
		label="preseq-c-curve",
		pos="1203,135",
		rects="1158.5,125.5,1247.5,144.5",
		width=1.2361];
	"preseq-c-curve" -> output_preseq_c_curve_files	[_draw_="c 7 -#000000 B 13 1247.27 130.17 1256.35 127.57 1265.19 123.45 1272 117 1287.51 102.3 1269.09 84.06 1286 71 1294.85 64.17 1475.91 \
64.37 1487 63 1499.75 61.42 1513.48 58.87 1525.94 56.22 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1526.13 58.69 1532.45 54.8 1525.08 53.9 ",
		pos="e,1533.9,54.473 1247.3,130.17 1256.3,127.57 1265.2,123.45 1272,117 1287.5,102.3 1269.1,84.061 1286,71 1294.8,64.17 1475.9,64.375 \
1487,63 1499.8,61.42 1513.5,58.869 1525.9,56.219"];
	percent_uniq_reads	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1160 80.5 1160 99.5 1272 99.5 1272 80.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1216 87.5 0 96 18 -percent_uniq_reads ",
		height=0.27778,
		label=percent_uniq_reads,
		pos="1216,90",
		rects="1160,80.5,1272,99.5",
		width=1.5556];
	"preseq-c-curve" -> percent_uniq_reads	[_draw_="c 7 -#000000 B 7 1188.68 125.58 1182.31 120.71 1177.05 114.32 1181 108 1181.76 106.78 1182.64 105.64 1183.61 104.59 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1184.95 106.66 1188.82 100.33 1181.85 102.87 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1228 110.6 0 94 22 -preseq_c_curve_outfile ",
		label=preseq_c_curve_outfile,
		lp="1228,112.5",
		pos="e,1190,99.375 1188.7,125.58 1182.3,120.71 1177,114.32 1181,108 1181.8,106.78 1182.6,105.64 1183.6,104.59"];
	execute_pcr_bottleneck_coef -> output_pbc_files	[_draw_="c 7 -#000000 B 13 1201.59 350.58 1219.22 344.48 1235 333.99 1235 316 1235 316 1235 316 1235 224 1235 218.93 1237.91 218 1242 215 \
1278.02 188.61 1565.91 90.43 1664.79 57.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1665.39 59.51 1671.24 54.96 1663.82 54.87 ",
		pos="e,1672.7,54.476 1201.6,350.58 1219.2,344.48 1235,333.99 1235,316 1235,316 1235,316 1235,224 1235,218.93 1237.9,218 1242,215 1278,\
188.61 1565.9,90.426 1664.8,57.128"];
	sam2bam -> sort_bams	[_draw_="c 7 -#000000 B 7 833.04 530.57 832.86 525.1 833.49 518.08 837 513 837.83 511.8 838.77 510.67 839.8 509.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 841.26 511.6 845.26 505.35 838.24 507.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 856 515.6 0 38 10 -input_file ",
		label=input_file,
		lp="856,517.5",
		pos="e,846.45,504.41 833.04,530.57 832.86,525.1 833.49,518.08 837,513 837.83,511.8 838.77,510.67 839.8,509.63"];
	percent_uniq_reads -> output_percentage_uniq_reads	[_draw_="c 7 -#000000 B 10 1241.69 80.53 1251.98 77.31 1263.99 73.75 1275 71 1293.01 66.51 1297.78 66.56 1316 63 1327.43 60.77 1339.69 58.37 \
1351.31 56.1 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1351.75 58.51 1358.15 54.77 1350.81 53.7 ",
		pos="e,1359.6,54.476 1241.7,80.532 1252,77.305 1264,73.747 1275,71 1293,66.507 1297.8,66.558 1316,63 1327.4,60.769 1339.7,58.372 1351.3,\
56.103"];
	mark_duplicates -> output_picard_mark_duplicates_files	[_draw_="c 7 -#000000 B 10 800.2 305.61 786.98 298.54 772 287 772 271 772 271 772 271 772 89 772 82 693.26 66.33 636.63 55.97 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 637.26 53.59 629.94 54.75 636.39 58.41 ",
		pos="e,628.45,54.479 800.2,305.61 786.98,298.54 772,287 772,271 772,271 772,271 772,89 772,82 693.26,66.332 636.63,55.968"];
	mark_duplicates -> sort_dups_marked_bams	[_draw_="c 7 -#000000 B 4 826.94 305.71 831.72 300 838.2 292.26 843.83 285.54 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 845.49 287.37 848.11 280.43 841.74 284.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 860 290.6 0 38 10 -input_file ",
		label=input_file,
		lp="860,292.5",
		pos="e,849.08,279.27 826.94,305.71 831.72,300 838.2,292.26 843.83,285.54"];
	index_dups_marked_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 783 215.5 783 234.5 929 234.5 929 215.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 856 222.5 0 130 22 -index_dups_marked_bams ",
		height=0.27778,
		label=index_dups_marked_bams,
		pos="856,225",
		rects="783,215.5,929,234.5",
		width=2.0278];
	index_dups_marked_bams -> output_data_sorted_dups_marked_bam_files	[_draw_="c 7 -#000000 B 10 849.12 215.69 843 207.43 835 194.13 835 181 835 181 835 181 835 89 835 77.21 826.94 66.95 818.45 59.41 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 820.16 57.64 813.17 55.15 817.08 61.45 ",
		pos="e,812,54.197 849.12,215.69 843,207.43 835,194.13 835,181 835,181 835,181 835,89 835,77.207 826.94,66.947 818.45,59.41"];
	index_dups_marked_bams -> remove_duplicates	[_draw_="c 7 -#000000 B 4 863.91 215.71 869.46 209.88 877.04 201.93 883.54 195.12 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 885.02 197.12 888.07 190.36 881.47 193.74 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 899 200.6 0 38 10 -input_file ",
		label=input_file,
		lp="899,202.5",
		pos="e,889.12,189.27 863.91,215.71 869.46,209.88 877.04,201.93 883.54,195.12"];
	sort_dups_marked_bams -> index_dups_marked_bams	[_draw_="c 7 -#000000 B 4 856 260.71 856 255.59 856 248.85 856 242.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 858.45 242.78 856 235.78 853.55 242.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 875 245.6 0 38 10 -input_file ",
		label=input_file,
		lp="875,247.5",
		pos="e,856,234.27 856,260.71 856,255.59 856,248.85 856,242.67"];
	bam_idxstats	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 648.5 125.5 648.5 144.5 731.5 144.5 731.5 125.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 690 132.5 0 67 12 -bam_idxstats ",
		height=0.27778,
		label=bam_idxstats,
		pos="690,135",
		rects="648.5,125.5,731.5,144.5",
		width=1.1528];
	bam_idxstats -> percent_mitochondrial_reads	[_draw_="c 7 -#000000 B 4 658.98 125.5 634.04 118.67 598.85 109.03 572 101.68 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 572.81 99.36 565.41 99.88 571.52 104.09 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 641.5 110.6 0 33 8 -idxstats ",
		label=idxstats,
		lp="641.5,112.5",
		pos="e,563.95,99.478 658.98,125.5 634.04,118.67 598.85,109.03 572,101.68"];
	index_filtered_bam	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 942 350.5 942 369.5 1052 369.5 1052 350.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 997 357.5 0 94 18 -index_filtered_bam ",
		height=0.27778,
		label=index_filtered_bam,
		pos="997,360",
		rects="942,350.5,1052,369.5",
		width=1.5278];
	index_filtered_bam -> mark_duplicates	[_draw_="c 7 -#000000 B 7 969.68 350.55 951.69 345.15 927.56 338.2 906 333 895.96 330.58 885.2 328.25 874.81 326.13 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 875.4 323.75 868.06 324.77 874.44 328.55 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 957 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="957,337.5",
		pos="e,866.57,324.47 969.68,350.55 951.69,345.15 927.56,338.2 906,333 895.96,330.58 885.2,328.25 874.81,326.13"];
	extract_basename_2	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1087.5 628.5 1087.5 647.5 1206.5 647.5 1206.5 628.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1147 635.5 0 103 18 -extract_basename_2 ",
		height=0.27778,
		label=extract_basename_2,
		pos="1147,638",
		rects="1087.5,628.5,1206.5,647.5",
		width=1.6528];
	extract_basename_1 -> extract_basename_2	[_draw_="c 7 -#000000 B 7 799.42 709.27 867.16 708.14 980.59 701.84 1074 675 1092.56 669.67 1112.12 659.76 1126.31 651.69 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1127.48 653.85 1132.29 648.2 1125.01 649.61 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1056 685.6 0 36 9 -file_path ",
		label=file_path,
		lp="1056,687.5",
		pos="e,1133.6,647.44 799.42,709.27 867.16,708.14 980.59,701.84 1074,675 1092.6,669.67 1112.1,659.76 1126.3,651.69"];
	index_bams	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 671 170.5 671 189.5 747 189.5 747 170.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 709 177.5 0 60 10 -index_bams ",
		height=0.27778,
		label=index_bams,
		pos="709,180",
		rects="671,170.5,747,189.5",
		width=1.0556];
	index_bams -> bam_idxstats	[_draw_="c 7 -#000000 B 4 705.34 170.71 702.97 165.36 699.82 158.22 696.98 151.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 699.33 151.06 694.26 145.65 694.85 153.04 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 710.5 155.6 0 19 3 -bam ",
		label=bam,
		lp="710.5,157.5",
		pos="e,693.65,144.27 705.34,170.71 702.97,165.36 699.82,158.22 696.98,151.81"];
	sort_bams -> index_bams	[_draw_="c 7 -#000000 B 13 866.51 485.66 864.25 480.48 861.16 473.75 858 468 848.32 450.39 760 336.09 760 316 760 316 760 316 760 224 760 \
210.57 749.54 200.49 738.09 193.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 739.56 191.48 732.25 190.23 737.18 195.77 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 790 335.6 0 38 10 -input_file ",
		label=input_file,
		lp="790,337.5",
		pos="e,730.92,189.5 866.51,485.66 864.25,480.48 861.16,473.75 858,468 848.32,450.39 760,336.09 760,316 760,316 760,316 760,224 760,210.57 \
749.54,200.49 738.09,193.47"];
	"filter-unmapped"	[_draw_="c 7 -#000000 C 7 -#fafad2 P 4 1011.5 440.5 1011.5 459.5 1106.5 459.5 1106.5 440.5 ",
		_ldraw_="F 10 9 -Helvetica c 7 -#000000 T 1059 447.5 0 79 15 -filter-unmapped ",
		height=0.27778,
		label="filter-unmapped",
		pos="1059,450",
		rects="1011.5,440.5,1106.5,459.5",
		width=1.3194];
	sort_bams -> "filter-unmapped"	[_draw_="c 7 -#000000 B 4 903.79 486.31 934.56 479.31 980.21 468.93 1014.05 461.23 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1014.19 463.71 1020.47 459.77 1013.1 458.93 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1000 470.6 0 38 10 -input_file ",
		label=input_file,
		lp="1000,472.5",
		pos="e,1021.9,459.43 903.79,486.31 934.56,479.31 980.21,468.93 1014.1,461.23"];
	mapped_filtered_reads_count -> output_read_count_mapped_filtered	[_draw_="c 7 -#000000 B 4 971.06 80.5 978.81 74.56 989.33 66.48 998.24 59.64 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 999.7 61.61 1003.76 55.4 996.71 57.72 ",
		pos="e,1005,54.478 971.06,80.505 978.81,74.556 989.33,66.481 998.24,59.637"];
	extract_basename_2 -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 16 1180.11 628.62 1200.59 621.22 1223 608.09 1223 586 1223 586 1223 586 1223 449 1223 408.58 1246 401.42 1246 361 \
1246 361 1246 361 1246 179 1246 166.48 1236.77 156.33 1226.86 149.04 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1228.44 147.15 1221.25 145.3 1225.72 151.22 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1289.5 380.6 0 91 20 -output_file_basename ",
		label=output_file_basename,
		lp="1289.5,382.5",
		pos="e,1220,144.46 1180.1,628.62 1200.6,621.22 1223,608.09 1223,586 1223,586 1223,586 1223,449 1223,408.58 1246,401.42 1246,361 1246,\
361 1246,361 1246,179 1246,166.48 1236.8,156.33 1226.9,149.04"];
	extract_basename_2 -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 13 1200.33 628.53 1210.24 624.84 1219.74 619.55 1227 612 1235.29 603.37 1234 597.97 1234 586 1234 586 1234 586 1234 \
404 1234 388.69 1222.5 378.81 1208.21 372.44 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1209.36 370.26 1201.94 369.98 1207.56 374.82 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1282.5 493.1 0 97 22 -input_output_filenames ",
		label=input_output_filenames,
		lp="1282.5,495",
		pos="e,1200.5,369.42 1200.3,628.53 1210.2,624.84 1219.7,619.55 1227,612 1235.3,603.37 1234,597.97 1234,586 1234,586 1234,586 1234,404 \
1234,388.69 1222.5,378.81 1208.2,372.44"];
	extract_basename_2 -> mark_duplicates	[_draw_="c 7 -#000000 B 10 1137.49 628.55 1123.64 615.98 1097.56 591.2 1079 567 1047.83 526.35 1054.13 506.2 1020 468 1012.47 459.57 885.92 \
365.07 838.1 329.47 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 839.68 327.59 832.6 325.37 836.75 331.52 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1060.5 470.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1060.5,472.5",
		pos="e,831.39,324.47 1137.5,628.55 1123.6,615.98 1097.6,591.2 1079,567 1047.8,526.35 1054.1,506.2 1020,468 1012.5,459.57 885.92,365.07 \
838.1,329.47"];
	extract_basename_2 -> "bowtie-pe"	[_draw_="c 7 -#000000 B 10 1115.59 628.56 1102.78 625.41 1087.76 622.1 1074 620 1048.56 616.13 868.68 604.67 843 603 749.35 596.92 639.28 \
591.04 581.35 588.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 581.82 585.62 574.7 587.71 581.57 590.51 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1010.5 605.6 0 67 15 -output_filename ",
		label=output_filename,
		lp="1010.5,607.5",
		pos="e,573.19,587.63 1115.6,628.56 1102.8,625.41 1087.8,622.1 1074,620 1048.6,616.13 868.68,604.67 843,603 749.35,596.92 639.28,591.04 \
581.35,588.05"];
	extract_basename_2 -> "filter-unmapped"	[_draw_="c 7 -#000000 B 10 1147.53 628.7 1148.12 618.61 1149 601.06 1149 586 1149 586 1149 586 1149 494 1149 475.29 1132.96 464.71 1114.43 \
458.74 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1115.23 456.42 1107.83 456.86 1113.89 461.13 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1182.5 538.1 0 67 15 -output_filename ",
		label=output_filename,
		lp="1182.5,540",
		pos="e,1106.4,456.45 1147.5,628.7 1148.1,618.61 1149,601.06 1149,586 1149,586 1149,586 1149,494 1149,475.29 1133,464.71 1114.4,458.74"];
	"bowtie-pe" -> output_bowtie_log	[_draw_="c 7 -#000000 B 10 508.68 583.19 454.93 580.95 353 572.56 353 541 353 541 353 541 353 89 353 84.22 300.68 67.86 263.2 56.76 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 264.31 54.53 256.91 54.9 262.93 59.23 ",
		pos="e,255.46,54.473 508.68,583.19 454.93,580.95 353,572.56 353,541 353,541 353,541 353,89 353,84.219 300.68,67.861 263.2,56.757"];
	"bowtie-pe" -> mapped_reads_count	[_draw_="c 7 -#000000 B 10 508.76 582.27 436.33 577.94 267 565.23 267 541 267 541 267 541 267 134 267 122.47 259.39 112.23 251.37 104.63 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 253.32 103.08 246.42 100.35 250.11 106.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 289.5 335.6 0 45 10 -bowtie_log ",
		label=bowtie_log,
		lp="289.5,337.5",
		pos="e,245.27,99.362 508.76,582.27 436.33,577.94 267,565.23 267,541 267,541 267,541 267,134 267,122.47 259.39,112.23 251.37,104.63"];
	"bowtie-pe" -> sam2bam	[_draw_="c 7 -#000000 B 4 573.48 579.23 627.3 571.34 734.86 555.55 793.54 546.94 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 793.76 549.38 800.33 545.94 793.05 544.53 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 732 560.6 0 38 10 -input_file ",
		label=input_file,
		lp="732,562.5",
		pos="e,801.83,545.72 573.48,579.23 627.3,571.34 734.86,555.55 793.54,546.94"];
	filtered2sorted -> "preseq-c-curve"	[_draw_="c 7 -#000000 B 10 1059 395.76 1059 387.1 1059 373.09 1059 361 1059 361 1059 361 1059 179 1059 159.29 1109.16 147.87 1150.27 141.81 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1150.53 144.25 1157.12 140.85 1149.85 139.4 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1093 268.1 0 68 17 -input_sorted_file ",
		label=input_sorted_file,
		lp="1093,270",
		pos="e,1158.6,140.64 1059,395.76 1059,387.1 1059,373.09 1059,361 1059,361 1059,361 1059,179 1059,159.29 1109.2,147.87 1150.3,141.81"];
	filtered2sorted -> execute_pcr_bottleneck_coef	[_draw_="c 7 -#000000 B 7 1062.04 395.71 1064.6 389.87 1068.86 382.35 1075 378 1077.69 376.1 1080.56 374.4 1083.54 372.88 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1084.39 375.19 1089.78 370.1 1082.39 370.71 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1107 380.6 0 64 15 -input_bam_files ",
		label=input_bam_files,
		lp="1107,382.5",
		pos="e,1091.2,369.49 1062,395.71 1064.6,389.87 1068.9,382.35 1075,378 1077.7,376.1 1080.6,374.4 1083.5,372.88"];
	filtered2sorted -> index_filtered_bam	[_draw_="c 7 -#000000 B 7 1032.09 395.59 1026.8 393.27 1021.51 390.43 1017 387 1013.03 383.98 1009.44 379.99 1006.43 376.05 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1008.55 374.81 1002.55 370.45 1004.53 377.6 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1036 380.6 0 38 10 -input_file ",
		label=input_file,
		lp="1036,382.5",
		pos="e,1001.7,369.21 1032.1,395.59 1026.8,393.27 1021.5,390.43 1017,387 1013,383.98 1009.4,379.99 1006.4,376.05"];
	index_dedup_bams -> output_data_sorted_dedup_bam_files	[_draw_="c 7 -#000000 B 4 1122.92 80.5 1140.79 73.88 1165.79 64.61 1185.37 57.35 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1186 59.73 1191.71 55 1184.3 55.14 ",
		pos="e,1193.1,54.478 1122.9,80.505 1140.8,73.879 1165.8,64.614 1185.4,57.353"];
	"filter-unmapped" -> filtered2sorted	[_draw_="c 7 -#000000 B 4 1059 440.71 1059 435.59 1059 428.85 1059 422.67 ",
		_hdraw_="S 5 -solid c 7 -#000000 C 7 -#000000 P 3 1061.45 422.78 1059 415.78 1056.55 422.78 ",
		_ldraw_="F 8 9 -Helvetica c 7 -#000000 T 1078 425.6 0 38 10 -input_file ",
		label=input_file,
		lp="1078,427.5",
		pos="e,1059,414.27 1059,440.71 1059,435.59 1059,428.85 1059,422.67"];
}